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The map label for this gene is rbfA

Identifier: 222110451

GI number: 222110451

Start: 1312488

End: 1312865

Strand: Direct

Name: rbfA

Synonym: Dtpsy_1248

Alternate gene names: 222110451

Gene position: 1312488-1312865 (Clockwise)

Preceding gene: 222110450

Following gene: 222110452

Centisome position: 34.57

GC content: 62.96

Gene sequence:

>378_bases
ATGGCTGCCAAGAAATCCTCTTCCCCCAACCGCGGCTTCAAGGTCGCGGACCAGATCCAGCGCGACCTCACCGAGCTGAT
CCGCGATCTCAAGGATCCGCGGATCGGAATGGTGACGCTGCAAGGGGTCGAGGTGACGCCGGACTATGCGCACGCCAAGG
TGTTCTTCAGTGTGCTCATCGGTGATGGTGAGGCCTCCGAGGAGGCCCTGAACCAGGCGGGTGGCTTTCTACGCAACGGC
CTGTTCAAGCGCCTGCACATCCACACCGTGCCCACGCTGCACTTCGTGTACGACCGCACCACCGAGAAGGCGGCCGACAT
GAATGCGCTGATCGCGCGCGCGGTGGCCTCTCGTTCCAAAGACGACGACGCAGCATGA

Upstream 100 bases:

>100_bases
CGGTATCAAGCTCAAGAACTACAACGACATCAAGGAAGGTGATCAGCTGGAGTTCTTCGAGATCAAGGAAATCGCACGCA
CGCTGTAAGGTCCGCACGAC

Downstream 100 bases:

>100_bases
CCGAACGCGCTCCCCGCATCCGGGTGCAGCGGCGCCCGGTGCACGGAGTGCTGCTGCTCGACAAACCCCTGGGCCTGTCC
AGCAACGACGCCTTGCAGAA

Product: ribosome-binding factor a

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 125; Mature: 124

Protein sequence:

>125_residues
MAAKKSSSPNRGFKVADQIQRDLTELIRDLKDPRIGMVTLQGVEVTPDYAHAKVFFSVLIGDGEASEEALNQAGGFLRNG
LFKRLHIHTVPTLHFVYDRTTEKAADMNALIARAVASRSKDDDAA

Sequences:

>Translated_125_residues
MAAKKSSSPNRGFKVADQIQRDLTELIRDLKDPRIGMVTLQGVEVTPDYAHAKVFFSVLIGDGEASEEALNQAGGFLRNG
LFKRLHIHTVPTLHFVYDRTTEKAADMNALIARAVASRSKDDDAA
>Mature_124_residues
AAKKSSSPNRGFKVADQIQRDLTELIRDLKDPRIGMVTLQGVEVTPDYAHAKVFFSVLIGDGEASEEALNQAGGFLRNGL
FKRLHIHTVPTLHFVYDRTTEKAADMNALIARAVASRSKDDDAA

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family

Homologues:

Organism=Escherichia coli, GI1789558, Length=119, Percent_Identity=36.1344537815126, Blast_Score=70, Evalue=5e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBFA_ACIET (B9MGP2)

Other databases:

- EMBL:   CP001392
- RefSeq:   YP_002552715.1
- ProteinModelPortal:   B9MGP2
- GeneID:   7383152
- GenomeReviews:   CP001392_GR
- KEGG:   dia:Dtpsy_1248
- ProtClustDB:   PRK00521
- GO:   GO:0005737
- HAMAP:   MF_00003
- InterPro:   IPR015946
- InterPro:   IPR000238
- Gene3D:   G3DSA:3.30.300.20
- ProDom:   PD007327
- TIGRFAMs:   TIGR00082

Pfam domain/function: PF02033 RBFA; SSF89919 Rib_bd_factA

EC number: NA

Molecular weight: Translated: 13726; Mature: 13595

Theoretical pI: Translated: 7.85; Mature: 7.85

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAKKSSSPNRGFKVADQIQRDLTELIRDLKDPRIGMVTLQGVEVTPDYAHAKVFFSVLI
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCEEECCCHHHHHHHHHHHC
GDGEASEEALNQAGGFLRNGLFKRLHIHTVPTLHFVYDRTTEKAADMNALIARAVASRSK
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHEECCCCHHHHHHHHHHHHHHHHHCCC
DDDAA
CCCCC
>Mature Secondary Structure 
AAKKSSSPNRGFKVADQIQRDLTELIRDLKDPRIGMVTLQGVEVTPDYAHAKVFFSVLI
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCEEECCCHHHHHHHHHHHC
GDGEASEEALNQAGGFLRNGLFKRLHIHTVPTLHFVYDRTTEKAADMNALIARAVASRSK
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHEECCCCHHHHHHHHHHHHHHHHHCCC
DDDAA
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA