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The map label for this gene is nlpD [C]

Identifier: 222110295

GI number: 222110295

Start: 1129955

End: 1130866

Strand: Direct

Name: nlpD [C]

Synonym: Dtpsy_1082

Alternate gene names: 222110295

Gene position: 1129955-1130866 (Clockwise)

Preceding gene: 222110294

Following gene: 222110296

Centisome position: 29.76

GC content: 65.68

Gene sequence:

>912_bases
ATGTTGGTATCGCGTAGTCTTGTGGTTTGGGGAGTTGCCGTGCTGGCTGGCGGTTTGCTGGCGGGGTGCAGCACCCCGAT
CAACAGGGCTCCCGTGGAAGATCGCGGCACCTTTGCCGCGAGCAGCGGCACGACGGGGCCCGCCGGGGCCGTGCCTGAGG
TCAAGCCCTTGCCTGGTGCTGAAAACGCGGGCAAGCCTGGCTACTACACCGTGAAGCCAGGCGACACGCTGATTCGCATT
GGCCTGGAAAACGGGCAAAGTTGGAAAGACATCGCGCGCTGGAACAATCTGGAAAACGCCAACCTGATCGAGGTGGGCCA
GGTGCTGCGTGTGGTGCCCCCGGCTGCGGCTGCGGCGACTGCGGTGGCATCTGACACCGGTGTGGTCACCCGCCCCGTCA
CGTCTTCGCCCTTGGCTGCAGCATCGGCTGCGAGTGCACCCAAGCCGTCGGCATCGGCGGCGTCTACACCGGCCGCGGTG
GCGCCGGCAGCGGCACCCAGCGCGCCGGCGGTGGCTACCGCGCCGGCCGCTACCGCTGCAACGGATGACGTCAACTTCAT
CTGGCCCTCGTCGGGCAGCCTGTTGGCGGGATTCGACGAGGTGCGTAACAAGGGCTACGACATCGGCGGCAAGGCAGGCG
ATCCGGTGCTCGCCGCTGCCGATGGGCGTGTGGTGTACGCCGGTGCTGGGCTTCGCGGCTATGGCAACCTGGTGATCTTG
AAACACAACAACACTTATCTCACGGCCTATGCGCACAACCAGACGCTGCTGGTGAAGGAAGACCAGAACGTGCGCCGCGG
CCAGAAGATTGCCGAGATGGGAAGCACCGACGCGGATCGTGTGAAACTGCATTTCGAAATCCGGCGCCAGGGCAAGCCCG
TGGACCCCGCCCGGTACCTCCCCTCCCGTTGA

Upstream 100 bases:

>100_bases
TGCTGGTCGTTGATAAAACTGCGCAAGGCTTGAAGCAGGGCATTCTGGAAGCCGTGCATTTCGTCCCCCTAAAATCGGGG
ATCGCCTGAAGGATTTGCTT

Downstream 100 bases:

>100_bases
GCGCGCCGGCTTCCATGGGAGAGGCGTCCTGGCTGGAGGATGCTGATCCAGCAGAGACAGGTGGGAGTCAGGCGGACGAG
TTTGAGGCGGAACTGCGGGA

Product: peptidase m23

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 303; Mature: 303

Protein sequence:

>303_residues
MLVSRSLVVWGVAVLAGGLLAGCSTPINRAPVEDRGTFAASSGTTGPAGAVPEVKPLPGAENAGKPGYYTVKPGDTLIRI
GLENGQSWKDIARWNNLENANLIEVGQVLRVVPPAAAAATAVASDTGVVTRPVTSSPLAAASAASAPKPSASAASTPAAV
APAAAPSAPAVATAPAATAATDDVNFIWPSSGSLLAGFDEVRNKGYDIGGKAGDPVLAAADGRVVYAGAGLRGYGNLVIL
KHNNTYLTAYAHNQTLLVKEDQNVRRGQKIAEMGSTDADRVKLHFEIRRQGKPVDPARYLPSR

Sequences:

>Translated_303_residues
MLVSRSLVVWGVAVLAGGLLAGCSTPINRAPVEDRGTFAASSGTTGPAGAVPEVKPLPGAENAGKPGYYTVKPGDTLIRI
GLENGQSWKDIARWNNLENANLIEVGQVLRVVPPAAAAATAVASDTGVVTRPVTSSPLAAASAASAPKPSASAASTPAAV
APAAAPSAPAVATAPAATAATDDVNFIWPSSGSLLAGFDEVRNKGYDIGGKAGDPVLAAADGRVVYAGAGLRGYGNLVIL
KHNNTYLTAYAHNQTLLVKEDQNVRRGQKIAEMGSTDADRVKLHFEIRRQGKPVDPARYLPSR
>Mature_303_residues
MLVSRSLVVWGVAVLAGGLLAGCSTPINRAPVEDRGTFAASSGTTGPAGAVPEVKPLPGAENAGKPGYYTVKPGDTLIRI
GLENGQSWKDIARWNNLENANLIEVGQVLRVVPPAAAAATAVASDTGVVTRPVTSSPLAAASAASAPKPSASAASTPAAV
APAAAPSAPAVATAPAATAATDDVNFIWPSSGSLLAGFDEVRNKGYDIGGKAGDPVLAAADGRVVYAGAGLRGYGNLVIL
KHNNTYLTAYAHNQTLLVKEDQNVRRGQKIAEMGSTDADRVKLHFEIRRQGKPVDPARYLPSR

Specific function: May Be Involved In Stationary-Phase Survival. [C]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell inner membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI1789099, Length=257, Percent_Identity=40.4669260700389, Blast_Score=181, Evalue=6e-47,
Organism=Escherichia coli, GI87082174, Length=295, Percent_Identity=35.9322033898305, Blast_Score=161, Evalue=6e-41,
Organism=Escherichia coli, GI87082297, Length=120, Percent_Identity=41.6666666666667, Blast_Score=75, Evalue=4e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 30947; Mature: 30947

Theoretical pI: Translated: 9.69; Mature: 9.69

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLVSRSLVVWGVAVLAGGLLAGCSTPINRAPVEDRGTFAASSGTTGPAGAVPEVKPLPGA
CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCC
ENAGKPGYYTVKPGDTLIRIGLENGQSWKDIARWNNLENANLIEVGQVLRVVPPAAAAAT
CCCCCCCEEEECCCCEEEEEECCCCCCHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHH
AVASDTGVVTRPVTSSPLAAASAASAPKPSASAASTPAAVAPAAAPSAPAVATAPAATAA
HHHCCCCEEECCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCC
TDDVNFIWPSSGSLLAGFDEVRNKGYDIGGKAGDPVLAAADGRVVYAGAGLRGYGNLVIL
CCCCEEEECCCCCEEECHHHHHHCCCCCCCCCCCCEEEECCCEEEEECCCCCCCCCEEEE
KHNNTYLTAYAHNQTLLVKEDQNVRRGQKIAEMGSTDADRVKLHFEIRRQGKPVDPARYL
EECCEEEEEEECCCEEEEECCCCHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCCHHHCC
PSR
CCC
>Mature Secondary Structure
MLVSRSLVVWGVAVLAGGLLAGCSTPINRAPVEDRGTFAASSGTTGPAGAVPEVKPLPGA
CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCC
ENAGKPGYYTVKPGDTLIRIGLENGQSWKDIARWNNLENANLIEVGQVLRVVPPAAAAAT
CCCCCCCEEEECCCCEEEEEECCCCCCHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHH
AVASDTGVVTRPVTSSPLAAASAASAPKPSASAASTPAAVAPAAAPSAPAVATAPAATAA
HHHCCCCEEECCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCC
TDDVNFIWPSSGSLLAGFDEVRNKGYDIGGKAGDPVLAAADGRVVYAGAGLRGYGNLVIL
CCCCEEEECCCCCEEECHHHHHHCCCCCCCCCCCCEEEECCCEEEEECCCCCCCCCEEEE
KHNNTYLTAYAHNQTLLVKEDQNVRRGQKIAEMGSTDADRVKLHFEIRRQGKPVDPARYL
EECCEEEEEEECCCEEEEECCCCHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCCHHHCC
PSR
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7959068; 10984043 [H]