BacMap

Definition	Acidovorax ebreus TPSY chromosome, complete genome.
Accession	NC_011992
Length	3,796,573

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The map label for this gene is yfmF [H]

Identifier: 222110231

GI number: 222110231

Start: 1058030

End: 1058812

Strand: Direct

Name: yfmF [H]

Synonym: Dtpsy_1017

Alternate gene names: 222110231

Gene position: 1058030-1058812 (Clockwise)

Preceding gene: 222110230

Following gene: 222110232

Centisome position: 27.87

GC content: 70.5

Gene sequence:

>783_bases
ATGAAGAACATAGCTGTTAGCGCACGCCAGATAAGCGCCAGCATCGCAAATGCCTCTATCTTGCGCGGCATTGACCTGGA
CCTGCCCGCTGGCCGCTGGACCAGCGTGGTCGGCCCCAATGGTGCGGGCAAGTCCACGCTGCTCAAGGTGCTGGCAGGCC
TGCTGCGCCATGCGCGTGTGCAAGGGCGGGTGCAGTTGCTGGGCCGCGCGCTGGCCGACATTCCCCCGCGCGAGCGCGCC
CGCCAACTGGCCTGGCTGGGCCAGAACGAGTCCGCCGCCGAAGACCTGCCCGCCTACGACGTGGCCATGCTCGGCCGCCT
GCCGCACCGTGCCTGGATGGCGCCGGCCAGCGATGCCGACCATGCCGCCGTGCAGCAGGCGCTGCACACCACTCAGGCGT
GGGACTGGCGCGACCGTCCGCTGTCGGAACTGTCGGGAGGCGAGCGCCAGCGCGTGCTGCTGGCGCGCGCGCTGGCCGTG
CAGGCACCCGTGCTGCTCATGGACGAACCCCTGGCCAACCTGGACCCGCCGCACCAGACCGATTGGCTGCACACCGTGCG
CGACCTGGTGGGGCAGGGCGGTACCGTGGTCAGCGTGCTGCACGAGGTATCCATCGCGCTGCAGGCCGACGACATGCTCA
TCATGGCTGCCGGCGGCGTGGTGCACCACGGGCCATGCCAGAGCACGGCCACGCACGCCGCGCTGGAGCAGGTGTTCGAG
CGGCGCATCCAGGTGCGCGAGATCGACGGCCTGTGGATGGCGCTGCCCCGCATGGAGCGGTGA

Upstream 100 bases:

>100_bases
TGGTGGCGCCGCAGGAACTGCCCGTGGGCGTGCTCACCGCCGCGCTGGGCGGCAGCTACCTGCTGTGGCTCATGCACCGC
CGGGTGTTGGGAAGCTCGCT

Downstream 100 bases:

>100_bases
ACGCGCTGCGCCCCTTTCCCCTTGAACCCCTTGCGGCCGGCGGCCGGCCGCAGAGGGCATGGAGTGTGAACGCATGAATT
TGGACGCCGGTTTTGCCCAG

Product: ABC transporter

Products: ADP; phosphate; iron dicitrate [Cytoplasm] [C]

Alternate protein names: Ferric-citrate import ATP-binding protein [H]

Number of amino acids: Translated: 260; Mature: 260

Protein sequence:

>260_residues
MKNIAVSARQISASIANASILRGIDLDLPAGRWTSVVGPNGAGKSTLLKVLAGLLRHARVQGRVQLLGRALADIPPRERA
RQLAWLGQNESAAEDLPAYDVAMLGRLPHRAWMAPASDADHAAVQQALHTTQAWDWRDRPLSELSGGERQRVLLARALAV
QAPVLLMDEPLANLDPPHQTDWLHTVRDLVGQGGTVVSVLHEVSIALQADDMLIMAAGGVVHHGPCQSTATHAALEQVFE
RRIQVREIDGLWMALPRMER

Sequences:

>Translated_260_residues
MKNIAVSARQISASIANASILRGIDLDLPAGRWTSVVGPNGAGKSTLLKVLAGLLRHARVQGRVQLLGRALADIPPRERA
RQLAWLGQNESAAEDLPAYDVAMLGRLPHRAWMAPASDADHAAVQQALHTTQAWDWRDRPLSELSGGERQRVLLARALAV
QAPVLLMDEPLANLDPPHQTDWLHTVRDLVGQGGTVVSVLHEVSIALQADDMLIMAAGGVVHHGPCQSTATHAALEQVFE
RRIQVREIDGLWMALPRMER
>Mature_260_residues
MKNIAVSARQISASIANASILRGIDLDLPAGRWTSVVGPNGAGKSTLLKVLAGLLRHARVQGRVQLLGRALADIPPRERA
RQLAWLGQNESAAEDLPAYDVAMLGRLPHRAWMAPASDADHAAVQQALHTTQAWDWRDRPLSELSGGERQRVLLARALAV
QAPVLLMDEPLANLDPPHQTDWLHTVRDLVGQGGTVVSVLHEVSIALQADDMLIMAAGGVVHHGPCQSTATHAALEQVFE
RRIQVREIDGLWMALPRMER

Specific function: Part of the ABC transporter complex YfmCDEF involved in citrate-dependent Fe(3+) import. Responsible for energy coupling to the transport system (Probable) [H]

COG id: COG1120

COG function: function code PH; ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI42490749, Length=219, Percent_Identity=27.8538812785388, Blast_Score=83, Evalue=2e-16,
Organism=Homo sapiens, GI190343023, Length=229, Percent_Identity=33.1877729257642, Blast_Score=82, Evalue=7e-16,
Organism=Homo sapiens, GI42741659, Length=213, Percent_Identity=26.2910798122066, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI4505771, Length=219, Percent_Identity=27.3972602739726, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI9961252, Length=219, Percent_Identity=27.3972602739726, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI9665248, Length=219, Percent_Identity=30.1369863013699, Blast_Score=66, Evalue=2e-11,
Organism=Escherichia coli, GI1790739, Length=257, Percent_Identity=34.6303501945525, Blast_Score=132, Evalue=3e-32,
Organism=Escherichia coli, GI1786803, Length=238, Percent_Identity=30.2521008403361, Blast_Score=118, Evalue=4e-28,
Organism=Escherichia coli, GI1786345, Length=220, Percent_Identity=33.6363636363636, Blast_Score=108, Evalue=5e-25,
Organism=Escherichia coli, GI1788761, Length=223, Percent_Identity=30.9417040358744, Blast_Score=98, Evalue=4e-22,
Organism=Escherichia coli, GI87081709, Length=232, Percent_Identity=31.0344827586207, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1790544, Length=236, Percent_Identity=30.9322033898305, Blast_Score=93, Evalue=1e-20,
Organism=Escherichia coli, GI1787029, Length=216, Percent_Identity=32.8703703703704, Blast_Score=92, Evalue=5e-20,
Organism=Escherichia coli, GI1788225, Length=240, Percent_Identity=29.5833333333333, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1790467, Length=226, Percent_Identity=28.7610619469027, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1786319, Length=234, Percent_Identity=27.3504273504274, Blast_Score=81, Evalue=6e-17,
Organism=Escherichia coli, GI1789672, Length=224, Percent_Identity=29.0178571428571, Blast_Score=81, Evalue=7e-17,
Organism=Escherichia coli, GI1788210, Length=235, Percent_Identity=29.3617021276596, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1787089, Length=211, Percent_Identity=33.175355450237, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1787712, Length=220, Percent_Identity=27.7272727272727, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI1788450, Length=226, Percent_Identity=30.5309734513274, Blast_Score=78, Evalue=7e-16,
Organism=Escherichia coli, GI1789593, Length=222, Percent_Identity=27.4774774774775, Blast_Score=78, Evalue=7e-16,
Organism=Escherichia coli, GI1789991, Length=198, Percent_Identity=27.2727272727273, Blast_Score=77, Evalue=9e-16,
Organism=Escherichia coli, GI1790190, Length=245, Percent_Identity=24.4897959183673, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI48994943, Length=243, Percent_Identity=29.2181069958848, Blast_Score=74, Evalue=7e-15,
Organism=Escherichia coli, GI48995001, Length=244, Percent_Identity=28.6885245901639, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI87081791, Length=263, Percent_Identity=28.1368821292776, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI1786398, Length=204, Percent_Identity=30.8823529411765, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1786253, Length=181, Percent_Identity=33.7016574585635, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1789891, Length=213, Percent_Identity=29.5774647887324, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1787370, Length=214, Percent_Identity=26.1682242990654, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1790162, Length=244, Percent_Identity=28.2786885245902, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1786703, Length=210, Percent_Identity=33.3333333333333, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI87081782, Length=203, Percent_Identity=29.064039408867, Blast_Score=71, Evalue=6e-14,
Organism=Escherichia coli, GI1787143, Length=224, Percent_Identity=25.8928571428571, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1786653, Length=227, Percent_Identity=27.7533039647577, Blast_Score=71, Evalue=8e-14,
Organism=Escherichia coli, GI1789873, Length=217, Percent_Identity=28.5714285714286, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1787105, Length=224, Percent_Identity=28.5714285714286, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1789890, Length=234, Percent_Identity=28.6324786324786, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI48994883, Length=264, Percent_Identity=26.1363636363636, Blast_Score=68, Evalue=5e-13,
Organism=Escherichia coli, GI1787758, Length=223, Percent_Identity=29.5964125560538, Blast_Score=68, Evalue=5e-13,
Organism=Escherichia coli, GI87082267, Length=165, Percent_Identity=30.9090909090909, Blast_Score=68, Evalue=5e-13,
Organism=Escherichia coli, GI1789586, Length=231, Percent_Identity=29.8701298701299, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1787113, Length=238, Percent_Identity=29.4117647058824, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1786563, Length=217, Percent_Identity=28.5714285714286, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1786654, Length=219, Percent_Identity=28.7671232876712, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1789032, Length=247, Percent_Identity=27.5303643724696, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1788506, Length=216, Percent_Identity=27.3148148148148, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1787792, Length=209, Percent_Identity=28.7081339712919, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1787164, Length=217, Percent_Identity=33.1797235023041, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI87081834, Length=214, Percent_Identity=30.8411214953271, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI1790534, Length=206, Percent_Identity=29.126213592233, Blast_Score=61, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI193209708, Length=216, Percent_Identity=28.7037037037037, Blast_Score=77, Evalue=6e-15,
Organism=Caenorhabditis elegans, GI212646699, Length=238, Percent_Identity=27.7310924369748, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI71996550, Length=212, Percent_Identity=27.8301886792453, Blast_Score=74, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI17539902, Length=216, Percent_Identity=27.3148148148148, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI193202349, Length=216, Percent_Identity=27.7777777777778, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17541710, Length=209, Percent_Identity=25.8373205741627, Blast_Score=71, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI71984940, Length=201, Percent_Identity=26.865671641791, Blast_Score=65, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI71988343, Length=226, Percent_Identity=25.2212389380531, Blast_Score=64, Evalue=8e-11,
Organism=Drosophila melanogaster, GI19920532, Length=228, Percent_Identity=27.6315789473684, Blast_Score=87, Evalue=1e-17,
Organism=Drosophila melanogaster, GI24580930, Length=228, Percent_Identity=27.6315789473684, Blast_Score=87, Evalue=1e-17,
Organism=Drosophila melanogaster, GI85816269, Length=224, Percent_Identity=28.5714285714286, Blast_Score=84, Evalue=6e-17,
Organism=Drosophila melanogaster, GI24580553, Length=224, Percent_Identity=28.5714285714286, Blast_Score=84, Evalue=6e-17,
Organism=Drosophila melanogaster, GI85724864, Length=224, Percent_Identity=28.5714285714286, Blast_Score=84, Evalue=7e-17,
Organism=Drosophila melanogaster, GI24580555, Length=224, Percent_Identity=28.5714285714286, Blast_Score=84, Evalue=7e-17,
Organism=Drosophila melanogaster, GI24581191, Length=215, Percent_Identity=24.6511627906977, Blast_Score=84, Evalue=8e-17,
Organism=Drosophila melanogaster, GI24581189, Length=215, Percent_Identity=24.6511627906977, Blast_Score=84, Evalue=8e-17,
Organism=Drosophila melanogaster, GI24581193, Length=215, Percent_Identity=24.6511627906977, Blast_Score=84, Evalue=8e-17,
Organism=Drosophila melanogaster, GI24581195, Length=215, Percent_Identity=24.6511627906977, Blast_Score=84, Evalue=8e-17,
Organism=Drosophila melanogaster, GI281363262, Length=239, Percent_Identity=26.3598326359833, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24653245, Length=239, Percent_Identity=26.3598326359833, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI28574533, Length=224, Percent_Identity=25.8928571428571, Blast_Score=74, Evalue=7e-14,
Organism=Drosophila melanogaster, GI161076682, Length=211, Percent_Identity=28.9099526066351, Blast_Score=74, Evalue=9e-14,
Organism=Drosophila melanogaster, GI161076684, Length=211, Percent_Identity=28.9099526066351, Blast_Score=74, Evalue=9e-14,
Organism=Drosophila melanogaster, GI24581617, Length=211, Percent_Identity=28.9099526066351, Blast_Score=74, Evalue=9e-14,
Organism=Drosophila melanogaster, GI24581615, Length=211, Percent_Identity=28.9099526066351, Blast_Score=74, Evalue=9e-14,
Organism=Drosophila melanogaster, GI21357907, Length=217, Percent_Identity=28.110599078341, Blast_Score=72, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24659289, Length=238, Percent_Identity=28.1512605042017, Blast_Score=71, Evalue=9e-13,
Organism=Drosophila melanogaster, GI24581383, Length=205, Percent_Identity=28.2926829268293, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24581385, Length=205, Percent_Identity=28.2926829268293, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24581387, Length=205, Percent_Identity=28.2926829268293, Blast_Score=69, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 28263; Mature: 28263

Theoretical pI: Translated: 7.40; Mature: 7.40

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNIAVSARQISASIANASILRGIDLDLPAGRWTSVVGPNGAGKSTLLKVLAGLLRHARV
CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
QGRVQLLGRALADIPPRERARQLAWLGQNESAAEDLPAYDVAMLGRLPHRAWMAPASDAD
HHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHCCHHHHHHHHCCCHHHHCCCCCCCH
HAAVQQALHTTQAWDWRDRPLSELSGGERQRVLLARALAVQAPVLLMDEPLANLDPPHQT
HHHHHHHHHHHCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHCCHHEECCCCCCCCCCCCH
DWLHTVRDLVGQGGTVVSVLHEVSIALQADDMLIMAAGGVVHHGPCQSTATHAALEQVFE
HHHHHHHHHHCCCCHHHHHHHHHHHHEECCCEEEEECCCEEECCCCCHHHHHHHHHHHHH
RRIQVREIDGLWMALPRMER
HHHHHHHHCCHHHHCCCCCC
>Mature Secondary Structure
MKNIAVSARQISASIANASILRGIDLDLPAGRWTSVVGPNGAGKSTLLKVLAGLLRHARV
CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
QGRVQLLGRALADIPPRERARQLAWLGQNESAAEDLPAYDVAMLGRLPHRAWMAPASDAD
HHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHCCHHHHHHHHCCCHHHHCCCCCCCH
HAAVQQALHTTQAWDWRDRPLSELSGGERQRVLLARALAVQAPVLLMDEPLANLDPPHQT
HHHHHHHHHHHCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHCCHHEECCCCCCCCCCCCH
DWLHTVRDLVGQGGTVVSVLHEVSIALQADDMLIMAAGGVVHHGPCQSTATHAALEQVFE
HHHHHHHHHHCCCCHHHHHHHHHHHHEECCCEEEEECCCEEECCCCCHHHHHHHHHHHHH
RRIQVREIDGLWMALPRMER
HHHHHHHHCCHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; iron dicitrate [Periplasm]; H2O [C]

Specific reaction: ATP + iron dicitrate [Periplasm] + H2O = ADP + phosphate + iron dicitrate [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9272861; 9384377 [H]