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The map label for this gene is ycfD [H]

Identifier: 222110134

GI number: 222110134

Start: 941768

End: 942889

Strand: Direct

Name: ycfD [H]

Synonym: Dtpsy_0920

Alternate gene names: 222110134

Gene position: 941768-942889 (Clockwise)

Preceding gene: 222110132

Following gene: 222110135

Centisome position: 24.81

GC content: 67.74

Gene sequence:

>1122_bases
ATGGACGTTCAACAACCGCTGGCCCTGCTCGGGGGCCTGAGCCCGGCGCAGTTCATGCGCCGCCACTGGCACAAGAAGCC
GCTGCTGGTGCGCCAGGCCATCCCCGGCTTCAAGCCGCTGCTGAGCCGCGCCGAACTGCTGGAGCTGGCCGGGCAGGACG
GTGTGGAGTCGCGCTTCATCCAGGATAAGGCCGGCCAATGGGTGCTGCGCCACGGGCCGTTGGCACGCCGCTCCCTGCCG
TCCCTGGCCACGCCGCGCTGGACAGCGCTGGTGCAAGGCGTGGATCTGCACAACGATGCCGTGCACGCGCTGCTACAGCA
GTTCCGTTTCGTGCCGGAGGCGCGGCTTGATGACCTGATGATCAGCTATGCCACCGACGGCGGAGGCGTGGGGCCGCATT
TCGACAACTACGACGTCTTCCTGCTGCAGGCCCATGGGCGGCGGCGCTGGCGCATCGGCCGGCAAAAGGACAAGACGCTG
CGCCCCGGGTTGCCGCTGAAGATCCTCGCGGCTTTCGAGCCCGAAGAAGAGCATGTGCTCGAGCCCGGCGACATGCTCTA
CCTACCGCCGGGCTGGGCCCACGATGGCATTGCCGAGGGGGAATGCATGACCTATTCCATCGGCTTTCGCTCGCCCAATG
GTGCCCAGTTGGCGCATGAGGTGCTGCAGCGTATGGCGGAGGCGGCGGCCGACGAGGAGGGGGCCATCTACCGTGACGCA
CAGCAGTCCGCTGTTGCGAACCCGGGAGCCATCCCGGCCGCGTTGCAAGACTTCGCACGCAAGGCGGTGCAGCGCGCGTT
GCAGCAGCCTCAGGCGCTGGAGTGCGCACTGGGCGAGGCTCTGACCGAACCCAAGCCCAACGTGTGGTTCGAGCCGTCTC
CGGCGGGCATGCTGGAGAGCGTGGTGCTGGACCGGCGCACGCGCATGATGTATGACGACAGGCATGTGTTCATCAACGGC
GAAAGCTATCGCGCGGCCGGTCGCGATGCGGTACTGATGCGTCGCTTGGCCGACGAGCGTCTCCTGGACTCGCGGGACCT
CGCGCGGGCGAGCGATGAAGCATTGGAGCTGCTGTCCGCATGGTGCGAGGCAGGCTGGGCCCATGCGGGCGCGCAGGCCT
GA

Upstream 100 bases:

>100_bases
TTCAAGACCCAGGTCAAGGCGACCACACATTGTTCGGTAATTTCCATAGGAGAATTGTCGCAGTTCACTGCCCTGCCGCG
CGCGCGGCCATTTTGATTCC

Downstream 100 bases:

>100_bases
CGCGTCGCCGCCGGAGACAAACCATGGAAGACGCCATCTCGCACGCACAGTCATCGCTGCCCGCTGGCCGGTTTGAAGGG
CGGGTGGCATTTCAGCAACT

Product: cupin 4 family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 373; Mature: 373

Protein sequence:

>373_residues
MDVQQPLALLGGLSPAQFMRRHWHKKPLLVRQAIPGFKPLLSRAELLELAGQDGVESRFIQDKAGQWVLRHGPLARRSLP
SLATPRWTALVQGVDLHNDAVHALLQQFRFVPEARLDDLMISYATDGGGVGPHFDNYDVFLLQAHGRRRWRIGRQKDKTL
RPGLPLKILAAFEPEEEHVLEPGDMLYLPPGWAHDGIAEGECMTYSIGFRSPNGAQLAHEVLQRMAEAAADEEGAIYRDA
QQSAVANPGAIPAALQDFARKAVQRALQQPQALECALGEALTEPKPNVWFEPSPAGMLESVVLDRRTRMMYDDRHVFING
ESYRAAGRDAVLMRRLADERLLDSRDLARASDEALELLSAWCEAGWAHAGAQA

Sequences:

>Translated_373_residues
MDVQQPLALLGGLSPAQFMRRHWHKKPLLVRQAIPGFKPLLSRAELLELAGQDGVESRFIQDKAGQWVLRHGPLARRSLP
SLATPRWTALVQGVDLHNDAVHALLQQFRFVPEARLDDLMISYATDGGGVGPHFDNYDVFLLQAHGRRRWRIGRQKDKTL
RPGLPLKILAAFEPEEEHVLEPGDMLYLPPGWAHDGIAEGECMTYSIGFRSPNGAQLAHEVLQRMAEAAADEEGAIYRDA
QQSAVANPGAIPAALQDFARKAVQRALQQPQALECALGEALTEPKPNVWFEPSPAGMLESVVLDRRTRMMYDDRHVFING
ESYRAAGRDAVLMRRLADERLLDSRDLARASDEALELLSAWCEAGWAHAGAQA
>Mature_373_residues
MDVQQPLALLGGLSPAQFMRRHWHKKPLLVRQAIPGFKPLLSRAELLELAGQDGVESRFIQDKAGQWVLRHGPLARRSLP
SLATPRWTALVQGVDLHNDAVHALLQQFRFVPEARLDDLMISYATDGGGVGPHFDNYDVFLLQAHGRRRWRIGRQKDKTL
RPGLPLKILAAFEPEEEHVLEPGDMLYLPPGWAHDGIAEGECMTYSIGFRSPNGAQLAHEVLQRMAEAAADEEGAIYRDA
QQSAVANPGAIPAALQDFARKAVQRALQQPQALECALGEALTEPKPNVWFEPSPAGMLESVVLDRRTRMMYDDRHVFING
ESYRAAGRDAVLMRRLADERLLDSRDLARASDEALELLSAWCEAGWAHAGAQA

Specific function: Unknown

COG id: COG2850

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 JmjC domain [H]

Homologues:

Organism=Escherichia coli, GI87081836, Length=369, Percent_Identity=33.6043360433604, Blast_Score=181, Evalue=9e-47,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013109
- InterPro:   IPR022777
- InterPro:   IPR014710
- InterPro:   IPR003347 [H]

Pfam domain/function: PF08007 Cupin_4 [H]

EC number: NA

Molecular weight: Translated: 41443; Mature: 41443

Theoretical pI: Translated: 6.38; Mature: 6.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDVQQPLALLGGLSPAQFMRRHWHKKPLLVRQAIPGFKPLLSRAELLELAGQDGVESRFI
CCCHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHH
QDKAGQWVLRHGPLARRSLPSLATPRWTALVQGVDLHNDAVHALLQQFRFVPEARLDDLM
HHHCCCEEECCCCHHHHCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHE
ISYATDGGGVGPHFDNYDVFLLQAHGRRRWRIGRQKDKTLRPGLPLKILAAFEPEEEHVL
EEEECCCCCCCCCCCCCCEEEEECCCCCHHCCCCCCCCCCCCCCCEEEEEECCCCHHHCC
EPGDMLYLPPGWAHDGIAEGECMTYSIGFRSPNGAQLAHEVLQRMAEAAADEEGAIYRDA
CCCCEEEECCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCEEHHH
QQSAVANPGAIPAALQDFARKAVQRALQQPQALECALGEALTEPKPNVWFEPSPAGMLES
HHHHCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCEECCCCHHHHHH
VVLDRRTRMMYDDRHVFINGESYRAAGRDAVLMRRLADERLLDSRDLARASDEALELLSA
HHHHHHHHHEECCCEEEECCCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
WCEAGWAHAGAQA
HHHHHHCCCCCCC
>Mature Secondary Structure
MDVQQPLALLGGLSPAQFMRRHWHKKPLLVRQAIPGFKPLLSRAELLELAGQDGVESRFI
CCCHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHH
QDKAGQWVLRHGPLARRSLPSLATPRWTALVQGVDLHNDAVHALLQQFRFVPEARLDDLM
HHHCCCEEECCCCHHHHCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHE
ISYATDGGGVGPHFDNYDVFLLQAHGRRRWRIGRQKDKTLRPGLPLKILAAFEPEEEHVL
EEEECCCCCCCCCCCCCCEEEEECCCCCHHCCCCCCCCCCCCCCCEEEEEECCCCHHHCC
EPGDMLYLPPGWAHDGIAEGECMTYSIGFRSPNGAQLAHEVLQRMAEAAADEEGAIYRDA
CCCCEEEECCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCEEHHH
QQSAVANPGAIPAALQDFARKAVQRALQQPQALECALGEALTEPKPNVWFEPSPAGMLES
HHHHCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCEECCCCHHHHHH
VVLDRRTRMMYDDRHVFINGESYRAAGRDAVLMRRLADERLLDSRDLARASDEALELLSA
HHHHHHHHHEECCCEEEECCCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
WCEAGWAHAGAQA
HHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1729240 [H]