| Definition | Acidovorax ebreus TPSY chromosome, complete genome. |
|---|---|
| Accession | NC_011992 |
| Length | 3,796,573 |
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The map label for this gene is 222109999
Identifier: 222109999
GI number: 222109999
Start: 812036
End: 813022
Strand: Direct
Name: 222109999
Synonym: Dtpsy_0784
Alternate gene names: NA
Gene position: 812036-813022 (Clockwise)
Preceding gene: 222109997
Following gene: 222110000
Centisome position: 21.39
GC content: 69.0
Gene sequence:
>987_bases ATGGCACTGCGCCGCACCCTGCTGTCCACCCTGGCCGCCTGCGCCGCCGCTGCGGCCTTCGCACCCCTGGCGCACGCCCA GGCGGGCGACTACCCCAACCGCCCCATCAAGCTGATCGTGCCGTTCGCGCCCGGCGGCTCCACCGACATGGTGGCCCGCC TGCTGGCCGACAAGATGGGGCCCATCCTGGGCAAGGCCGTGGTGGTGGACAACAAGGGCGGAGCCGGCGGCTCCATCGGC GCAGACGCCATCGCCAAGGCGGCACCGGACGGCTACACCATCGGCATGGCCACGGTGAGCACCCACGGCGCCAACCCCGC CATCTACGCCAAGCTGCCGTATGACGCGGTGAAGGACTTCGCCCCCATCACCAACGTGATGAGCGTGCCCAGCGTCTTCG TGGTGCACCCCAGCGTGCCCGCCAAGACCATGCAGGAGTTCGTGGCGCTGGCCAAGGCCAACCCCGGCAAGTACACCTTT GCCTCGCCAGGCACGGGCTCGCTGGGGCATGCCAACATCGAGAACTTCATGAACCTGGCGGGCATCGACCTGCTGCACAT CCCCTACAAGGGCGCGGGCCAGGCCGCGACCGATGCGCTGGCGGGCCAGGTCAACGCGATGACGGACAACCTGCCCTCCA CGCTGGCCAACATCCAGTCGGGCAAGCTGCGCCCGCTGGCCGTGCTGGCCTTGAAGCGCAGCCCCGTGCTGCCCGACGTG CCCACCTACACCGAGCTGGGCTACGCCGGCATGGGTGACGGCGGGTGGTTCGGCCTGGTGGCGCCCGCGGGCACGCCTAA GGAGATCATCGCCAAGCTGAACGCCGCCGCGCACAAGGCCATGGCCATGCCCGACTACCTGGAGAAGCAAAAGAGCATCT CCGGCGAATCCATGGCCAACACGCCCGCGCAGTTTGCCAAGCAGATCGACGCCGCCATCGCGCGCTACACGGCCGTGGCC AAGCGCGCCAACATCAAGCTGGACTGA
Upstream 100 bases:
>100_bases GTGTTGGTAATGGATTGCCGCCATTTTGTCGCTTTTCGTAAACGCGGGGGCGCTCAAGAATGGGGCTGCCCCCATTCATT CAAATACCGAGGAGATCCCC
Downstream 100 bases:
>100_bases TGGTGCGCCTTTGACTGCGTTGCATGACGACCTGAGCCCCCGGCCGGACACTCCGGTCGAGGTCTGGCAACCCACGGGGC AGCCGCTGCCGCTGGTGTGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 328; Mature: 327
Protein sequence:
>328_residues MALRRTLLSTLAACAAAAAFAPLAHAQAGDYPNRPIKLIVPFAPGGSTDMVARLLADKMGPILGKAVVVDNKGGAGGSIG ADAIAKAAPDGYTIGMATVSTHGANPAIYAKLPYDAVKDFAPITNVMSVPSVFVVHPSVPAKTMQEFVALAKANPGKYTF ASPGTGSLGHANIENFMNLAGIDLLHIPYKGAGQAATDALAGQVNAMTDNLPSTLANIQSGKLRPLAVLALKRSPVLPDV PTYTELGYAGMGDGGWFGLVAPAGTPKEIIAKLNAAAHKAMAMPDYLEKQKSISGESMANTPAQFAKQIDAAIARYTAVA KRANIKLD
Sequences:
>Translated_328_residues MALRRTLLSTLAACAAAAAFAPLAHAQAGDYPNRPIKLIVPFAPGGSTDMVARLLADKMGPILGKAVVVDNKGGAGGSIG ADAIAKAAPDGYTIGMATVSTHGANPAIYAKLPYDAVKDFAPITNVMSVPSVFVVHPSVPAKTMQEFVALAKANPGKYTF ASPGTGSLGHANIENFMNLAGIDLLHIPYKGAGQAATDALAGQVNAMTDNLPSTLANIQSGKLRPLAVLALKRSPVLPDV PTYTELGYAGMGDGGWFGLVAPAGTPKEIIAKLNAAAHKAMAMPDYLEKQKSISGESMANTPAQFAKQIDAAIARYTAVA KRANIKLD >Mature_327_residues ALRRTLLSTLAACAAAAAFAPLAHAQAGDYPNRPIKLIVPFAPGGSTDMVARLLADKMGPILGKAVVVDNKGGAGGSIGA DAIAKAAPDGYTIGMATVSTHGANPAIYAKLPYDAVKDFAPITNVMSVPSVFVVHPSVPAKTMQEFVALAKANPGKYTFA SPGTGSLGHANIENFMNLAGIDLLHIPYKGAGQAATDALAGQVNAMTDNLPSTLANIQSGKLRPLAVLALKRSPVLPDVP TYTELGYAGMGDGGWFGLVAPAGTPKEIIAKLNAAAHKAMAMPDYLEKQKSISGESMANTPAQFAKQIDAAIARYTAVAK RANIKLD
Specific function: Unknown
COG id: COG3181
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Periplasm (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0065 (bug) family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005064 [H]
Pfam domain/function: PF03401 Bug [H]
EC number: NA
Molecular weight: Translated: 33701; Mature: 33570
Theoretical pI: Translated: 9.78; Mature: 9.78
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MALRRTLLSTLAACAAAAAFAPLAHAQAGDYPNRPIKLIVPFAPGGSTDMVARLLADKMG CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHC PILGKAVVVDNKGGAGGSIGADAIAKAAPDGYTIGMATVSTHGANPAIYAKLPYDAVKDF HHHCCEEEEECCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCCCCEEEEECCHHHHHHH APITNVMSVPSVFVVHPSVPAKTMQEFVALAKANPGKYTFASPGTGSLGHANIENFMNLA HHHHHHHHCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCHHHHHHHH GIDLLHIPYKGAGQAATDALAGQVNAMTDNLPSTLANIQSGKLRPLAVLALKRSPVLPDV CCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCC PTYTELGYAGMGDGGWFGLVAPAGTPKEIIAKLNAAAHKAMAMPDYLEKQKSISGESMAN CCHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCC TPAQFAKQIDAAIARYTAVAKRANIKLD CHHHHHHHHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure ALRRTLLSTLAACAAAAAFAPLAHAQAGDYPNRPIKLIVPFAPGGSTDMVARLLADKMG HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHC PILGKAVVVDNKGGAGGSIGADAIAKAAPDGYTIGMATVSTHGANPAIYAKLPYDAVKDF HHHCCEEEEECCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCCCCEEEEECCHHHHHHH APITNVMSVPSVFVVHPSVPAKTMQEFVALAKANPGKYTFASPGTGSLGHANIENFMNLA HHHHHHHHCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCHHHHHHHH GIDLLHIPYKGAGQAATDALAGQVNAMTDNLPSTLANIQSGKLRPLAVLALKRSPVLPDV CCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCC PTYTELGYAGMGDGGWFGLVAPAGTPKEIIAKLNAAAHKAMAMPDYLEKQKSISGESMAN CCHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCC TPAQFAKQIDAAIARYTAVAKRANIKLD CHHHHHHHHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2013566 [H]