| Definition | Acidovorax ebreus TPSY chromosome, complete genome. |
|---|---|
| Accession | NC_011992 |
| Length | 3,796,573 |
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The map label for this gene is gmr [H]
Identifier: 222109640
GI number: 222109640
Start: 425450
End: 427822
Strand: Direct
Name: gmr [H]
Synonym: Dtpsy_0420
Alternate gene names: 222109640
Gene position: 425450-427822 (Clockwise)
Preceding gene: 222109635
Following gene: 222109642
Centisome position: 11.21
GC content: 71.26
Gene sequence:
>2373_bases ATGCTGCGATTGTCGCAGCACGCGAGGCCCCTTCAGGAGTGTGGATTGCTGAGTAAAGGCGCGGGCCGCAGGCCCTCGTG GAGGCCCCTGCAGGGCCGCTGGATGTTGGCGCTGGCCGTTGGTGCCATGGGTGCGGCCTGGGCCTGGGCGGGTGCGGCCG CCTTGCAGTATCTGCCCCTGGAGCCGCAGGCGCTGCAGACCCTGCTGCAGTACAAGAGCGGGCTGGACGCCGTGCTGGCG GGCGCACTGCTGGGCTGGCTCCTGCTGCGCTGGCGCCGGGGCGGGAGCCGGCGCACCCTGGCGCGCCGGGTGGAGCAGGT GCTGCGCCACGCGCCCGCCGGCATGGCGCGGCTGAGCATGGACGGCCGCCTGGTATGGGCCAACGAACGCCTGCGTGAAT GGCTGGGCGTGGCGCCGCACGAGCCGCTACCCCAGGTCGACTTTCGCACGCTGGTGCGCCCGCACGACAGCGATTGGGCG CAGCGGCAACTGCAGCGGCTGCGCGCCGGCGAGATCGACCATTACCAGGGCGAGCGCTGGTGCCGCAACCAGCGCGATGG ATCGCAGCTGCCCGTGCTGTGCACCGTGAGCCATGTGCTGGCCCTGGAGAGTGAGCCCGACCACCTGGTGTGCGTACTGC AGTCCCTGCGCGAAGTGCATGCCGCGCGCGACGCGCAGGCGCTCAGCGAGCAGCGCTGGCGCCTGGCGGCCACGGTGGTG GACAACACCATCGAAGGCGTGGTGGTCACCGATGCCGACGGCCGCATCCTCTCGGTCAACCCGGCCGTCACGCGGCTCAT GGGCTATACCGAGGAAGAGTTGCTGGGCCAGAACCCGCGTGTGTTCAAGTCGGGGCGGCACGGACCGGCGTTCTACGAGG CCATGTGGGACACCATGCGCCAGACGGGCCACTGGCAGGGGGAGATCTGGAACCGGCGCAAGAACGGCGAGGTGTTCCCG GAGCGCATGTCGCTCTCGGCCGTGCGCGGCGCGGACGGCGCGGTGACGCACTACGTGTGCATGTTCACCGACATCTCCGA GGAAAAGGCCCAGCACCAGCGCCTGGAGTTTCTGGCGCACTGCGACCCGCTGACCGGCCTGCCCAATCGCGCCTGGTTCG GCGAGCAGCTCGACAGCGCCGTGCGCCAGGCCCAGGACAGCGGCGAGCAGATGGCCCTGCTGCTCCTGAACCTGGACCGC TTCAAGGACGTGAACGACAGCTACGGCCACGCCGTGGGCGACGAGGTGCTCAGGCACATCACCCGCCAGGTGGAGCAGAG TCTGCGCCCGGGCGATCTGCTGGGGCGGCTGGCCGGCGACGAGATCGCCGTGCTGGCCCGCCACCTGCGCCATGCGGACG GCGCGGCAGCCGTGGCGCGGCACCTGATCGCCGCGGCCAGCACGCCCTGGTGCACGCCCGATGGCATCCAGGTGGTGGTG GGCGTGAGCGTGGGCATCTGCATGTTCCCCGCGCATGCGCGGACCACCGAGGCGCTGCTGCAGGGCGCGCATTCCTCGGT GTACGGCGCCAAGGCCCGCGGGCGCGGCGCGTATTGCTTCTTTGACGAATCGCTCATTCAGGCCGCGCGCGAGCGCCTGG AGATCGAGGCGCGGCTGCGCGTGGCCCTGGCGCAGGGGCACCTGCGGCTGTACTACCAACCGCAGGTATGCATCGTCACC GGCCGGATCATGGGGGCCGAGGCGCTGGTGCGCTGGCTGGACCCGCAGGAGGGCATGATCTCGCCCGCCCGCTTCATCCC CGTGGCCGAGACCTCGGGCGTGATCGGCCCGCTGGGCCAGTGGGTGATGCGCGCCGCCTGCGAGCAGGGCCAGCGCTGGC GCGCCGACGGCCTGCCGGAGATCCGCCTGGCCATCAATCTCTCGCCGCGCCAGTTCCAGTTGACCGACGTGGCCGCCTGC GCCGCCGAGGCGCTCAAGGCCAGCGGCTTCCCGGCCCGCTGCCTGGAGCTGGAACTGACCGAGTCGGTGCTGGCCGAGCG GCCCGACGAGATCCGCGCCGTGCTGCAACGCCTGCAGCAGCTGGGCGTGCGCATGGCGGTGGACGACTTCGGCACCGGCT ATTCGTCCCTGGCGCACCTCAAGCGCTTTCCCATCGACGTGCTCAAGATCGACCAAGGCTTCATCCGCGATATTCCCCGC AGCGCCGACGACATGGCCATCAGCGCCGCCATCGTTGCCATGGGGCACAGCCTGGGGCTGTCGGTGCTGGCCGAGGGGGT GGAGACGCCGCAGCAGCTGGCGTTCCTGCGCGAGCGCGGCTGCGACGCCTACCAGGGCTACCTGTGCAGCCGCCCCCTGC CGGCGGAGGAGTTCGCCCGGCTGCTGCAGGCGCACAACGGCATGGCGGGCTGA
Upstream 100 bases:
>100_bases CCTCGATGTTGCCGCCGTGGTCCAGCAGGAAGCCGGAGACGGCGTGCACCAGCCCGAGCCGGTCGGGGCAGGACAGTGTC AGGATGTAGGAATGGGTCAT
Downstream 100 bases:
>100_bases GCGAGCGCGGGCTGGGGCCAGCGTCCGCTACGGCGCGGGCGGCGGGCCGGGCCAGCGCTCGCGCAGCTCCGCGCACGGGT CGTGGGGCGTCAGCGCCGGC
Product: PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 790; Mature: 790
Protein sequence:
>790_residues MLRLSQHARPLQECGLLSKGAGRRPSWRPLQGRWMLALAVGAMGAAWAWAGAAALQYLPLEPQALQTLLQYKSGLDAVLA GALLGWLLLRWRRGGSRRTLARRVEQVLRHAPAGMARLSMDGRLVWANERLREWLGVAPHEPLPQVDFRTLVRPHDSDWA QRQLQRLRAGEIDHYQGERWCRNQRDGSQLPVLCTVSHVLALESEPDHLVCVLQSLREVHAARDAQALSEQRWRLAATVV DNTIEGVVVTDADGRILSVNPAVTRLMGYTEEELLGQNPRVFKSGRHGPAFYEAMWDTMRQTGHWQGEIWNRRKNGEVFP ERMSLSAVRGADGAVTHYVCMFTDISEEKAQHQRLEFLAHCDPLTGLPNRAWFGEQLDSAVRQAQDSGEQMALLLLNLDR FKDVNDSYGHAVGDEVLRHITRQVEQSLRPGDLLGRLAGDEIAVLARHLRHADGAAAVARHLIAAASTPWCTPDGIQVVV GVSVGICMFPAHARTTEALLQGAHSSVYGAKARGRGAYCFFDESLIQAARERLEIEARLRVALAQGHLRLYYQPQVCIVT GRIMGAEALVRWLDPQEGMISPARFIPVAETSGVIGPLGQWVMRAACEQGQRWRADGLPEIRLAINLSPRQFQLTDVAAC AAEALKASGFPARCLELELTESVLAERPDEIRAVLQRLQQLGVRMAVDDFGTGYSSLAHLKRFPIDVLKIDQGFIRDIPR SADDMAISAAIVAMGHSLGLSVLAEGVETPQQLAFLRERGCDAYQGYLCSRPLPAEEFARLLQAHNGMAG
Sequences:
>Translated_790_residues MLRLSQHARPLQECGLLSKGAGRRPSWRPLQGRWMLALAVGAMGAAWAWAGAAALQYLPLEPQALQTLLQYKSGLDAVLA GALLGWLLLRWRRGGSRRTLARRVEQVLRHAPAGMARLSMDGRLVWANERLREWLGVAPHEPLPQVDFRTLVRPHDSDWA QRQLQRLRAGEIDHYQGERWCRNQRDGSQLPVLCTVSHVLALESEPDHLVCVLQSLREVHAARDAQALSEQRWRLAATVV DNTIEGVVVTDADGRILSVNPAVTRLMGYTEEELLGQNPRVFKSGRHGPAFYEAMWDTMRQTGHWQGEIWNRRKNGEVFP ERMSLSAVRGADGAVTHYVCMFTDISEEKAQHQRLEFLAHCDPLTGLPNRAWFGEQLDSAVRQAQDSGEQMALLLLNLDR FKDVNDSYGHAVGDEVLRHITRQVEQSLRPGDLLGRLAGDEIAVLARHLRHADGAAAVARHLIAAASTPWCTPDGIQVVV GVSVGICMFPAHARTTEALLQGAHSSVYGAKARGRGAYCFFDESLIQAARERLEIEARLRVALAQGHLRLYYQPQVCIVT GRIMGAEALVRWLDPQEGMISPARFIPVAETSGVIGPLGQWVMRAACEQGQRWRADGLPEIRLAINLSPRQFQLTDVAAC AAEALKASGFPARCLELELTESVLAERPDEIRAVLQRLQQLGVRMAVDDFGTGYSSLAHLKRFPIDVLKIDQGFIRDIPR SADDMAISAAIVAMGHSLGLSVLAEGVETPQQLAFLRERGCDAYQGYLCSRPLPAEEFARLLQAHNGMAG >Mature_790_residues MLRLSQHARPLQECGLLSKGAGRRPSWRPLQGRWMLALAVGAMGAAWAWAGAAALQYLPLEPQALQTLLQYKSGLDAVLA GALLGWLLLRWRRGGSRRTLARRVEQVLRHAPAGMARLSMDGRLVWANERLREWLGVAPHEPLPQVDFRTLVRPHDSDWA QRQLQRLRAGEIDHYQGERWCRNQRDGSQLPVLCTVSHVLALESEPDHLVCVLQSLREVHAARDAQALSEQRWRLAATVV DNTIEGVVVTDADGRILSVNPAVTRLMGYTEEELLGQNPRVFKSGRHGPAFYEAMWDTMRQTGHWQGEIWNRRKNGEVFP ERMSLSAVRGADGAVTHYVCMFTDISEEKAQHQRLEFLAHCDPLTGLPNRAWFGEQLDSAVRQAQDSGEQMALLLLNLDR FKDVNDSYGHAVGDEVLRHITRQVEQSLRPGDLLGRLAGDEIAVLARHLRHADGAAAVARHLIAAASTPWCTPDGIQVVV GVSVGICMFPAHARTTEALLQGAHSSVYGAKARGRGAYCFFDESLIQAARERLEIEARLRVALAQGHLRLYYQPQVCIVT GRIMGAEALVRWLDPQEGMISPARFIPVAETSGVIGPLGQWVMRAACEQGQRWRADGLPEIRLAINLSPRQFQLTDVAAC AAEALKASGFPARCLELELTESVLAERPDEIRAVLQRLQQLGVRMAVDDFGTGYSSLAHLKRFPIDVLKIDQGFIRDIPR SADDMAISAAIVAMGHSLGLSVLAEGVETPQQLAFLRERGCDAYQGYLCSRPLPAEEFARLLQAHNGMAG
Specific function: Part of a 2 protein system that seems to be dedicated to transcription of csgD. This protein decreases csgD transcription and thus decreases expression of adhesive curli fimbriae genes csgEFG, csgBAC/ymaD and adrA (yaic). Activity of this protein is antag
COG id: COG5001
COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]
Homologues:
Organism=Escherichia coli, GI1787541, Length=550, Percent_Identity=35.0909090909091, Blast_Score=328, Evalue=8e-91, Organism=Escherichia coli, GI87081921, Length=463, Percent_Identity=33.9092872570194, Blast_Score=264, Evalue=2e-71, Organism=Escherichia coli, GI226510982, Length=419, Percent_Identity=31.5035799522673, Blast_Score=192, Evalue=8e-50, Organism=Escherichia coli, GI1790496, Length=246, Percent_Identity=32.9268292682927, Blast_Score=147, Evalue=3e-36, Organism=Escherichia coli, GI87081743, Length=248, Percent_Identity=33.0645161290323, Blast_Score=143, Evalue=4e-35, Organism=Escherichia coli, GI1786507, Length=255, Percent_Identity=34.9019607843137, Blast_Score=141, Evalue=2e-34, Organism=Escherichia coli, GI1787055, Length=259, Percent_Identity=33.976833976834, Blast_Score=140, Evalue=2e-34, Organism=Escherichia coli, GI1788502, Length=278, Percent_Identity=32.7338129496403, Blast_Score=139, Evalue=9e-34, Organism=Escherichia coli, GI1788849, Length=501, Percent_Identity=27.1457085828343, Blast_Score=138, Evalue=1e-33, Organism=Escherichia coli, GI87081980, Length=269, Percent_Identity=33.0855018587361, Blast_Score=138, Evalue=2e-33, Organism=Escherichia coli, GI87081845, Length=261, Percent_Identity=33.3333333333333, Blast_Score=129, Evalue=9e-31, Organism=Escherichia coli, GI1788381, Length=592, Percent_Identity=24.4932432432432, Blast_Score=127, Evalue=2e-30, Organism=Escherichia coli, GI87082096, Length=433, Percent_Identity=25.8660508083141, Blast_Score=121, Evalue=1e-28, Organism=Escherichia coli, GI1789650, Length=452, Percent_Identity=24.7787610619469, Blast_Score=110, Evalue=3e-25, Organism=Escherichia coli, GI145693134, Length=184, Percent_Identity=26.6304347826087, Blast_Score=91, Evalue=2e-19, Organism=Escherichia coli, GI87081881, Length=257, Percent_Identity=30.3501945525292, Blast_Score=87, Evalue=3e-18, Organism=Escherichia coli, GI1786584, Length=174, Percent_Identity=29.8850574712644, Blast_Score=85, Evalue=1e-17, Organism=Escherichia coli, GI1787262, Length=165, Percent_Identity=29.6969696969697, Blast_Score=85, Evalue=1e-17, Organism=Escherichia coli, GI1787410, Length=228, Percent_Identity=28.5087719298246, Blast_Score=77, Evalue=3e-15, Organism=Escherichia coli, GI1788956, Length=163, Percent_Identity=31.9018404907975, Blast_Score=75, Evalue=1e-14, Organism=Escherichia coli, GI1788085, Length=162, Percent_Identity=27.1604938271605, Blast_Score=69, Evalue=1e-12, Organism=Escherichia coli, GI1787816, Length=170, Percent_Identity=28.8235294117647, Blast_Score=68, Evalue=2e-12, Organism=Escherichia coli, GI87081977, Length=95, Percent_Identity=33.6842105263158, Blast_Score=66, Evalue=9e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001054 - InterPro: IPR000160 - InterPro: IPR001633 - InterPro: IPR000014 - InterPro: IPR013767 [H]
Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF00989 PAS [H]
EC number: =3.1.4.52 [H]
Molecular weight: Translated: 87515; Mature: 87515
Theoretical pI: Translated: 7.60; Mature: 7.60
Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50883 EAL ; PS50887 GGDEF ; PS00237 G_PROTEIN_RECEP_F1_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLRLSQHARPLQECGLLSKGAGRRPSWRPLQGRWMLALAVGAMGAAWAWAGAAALQYLPL CCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHCCCC EPQALQTLLQYKSGLDAVLAGALLGWLLLRWRRGGSRRTLARRVEQVLRHAPAGMARLSM CHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCEEECC DGRLVWANERLREWLGVAPHEPLPQVDFRTLVRPHDSDWAQRQLQRLRAGEIDHYQGERW CCEEEECHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCHHH CRNQRDGSQLPVLCTVSHVLALESEPDHLVCVLQSLREVHAARDAQALSEQRWRLAATVV HCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH DNTIEGVVVTDADGRILSVNPAVTRLMGYTEEELLGQNPRVFKSGRHGPAFYEAMWDTMR HCCCCEEEEECCCCCEEECCHHHHHHHCCCHHHHCCCCCCHHCCCCCCHHHHHHHHHHHH QTGHWQGEIWNRRKNGEVFPERMSLSAVRGADGAVTHYVCMFTDISEEKAQHQRLEFLAH HCCCCCCHHHCCCCCCCCCHHHHHHHHHCCCCCCHHEEEEEEECCHHHHHHHHHHHHHHH CDPLTGLPNRAWFGEQLDSAVRQAQDSGEQMALLLLNLDRFKDVNDSYGHAVGDEVLRHI CCCCCCCCCCCCCHHHHHHHHHHHHCCCHHEEHHHHHHHHHCCCCCCCCHHHHHHHHHHH TRQVEQSLRPGDLLGRLAGDEIAVLARHLRHADGAAAVARHLIAAASTPWCTPDGIQVVV HHHHHHCCCCHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCEEEE GVSVGICMFPAHARTTEALLQGAHSSVYGAKARGRGAYCFFDESLIQAARERLEIEARLR ECHHHHHCCCCCHHHHHHHHHCCCCHHCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHH VALAQGHLRLYYQPQVCIVTGRIMGAEALVRWLDPQEGMISPARFIPVAETSGVIGPLGQ HHEECCCEEEEECCCEEEEECCHHHHHHHHHHCCCCCCCCCCHHEEECCCCCCCHHHHHH WVMRAACEQGQRWRADGLPEIRLAINLSPRQFQLTDVAACAAEALKASGFPARCLELELT HHHHHHHHCCCCCCCCCCCEEEEEEECCCCEEEHHHHHHHHHHHHHCCCCCHHHHHHHHH ESVLAERPDEIRAVLQRLQQLGVRMAVDDFGTGYSSLAHLKRFPIDVLKIDQGFIRDIPR HHHHHCCCHHHHHHHHHHHHCCCEEEHHHCCCCHHHHHHHHHCCCHHEECCCHHHHHCCC SADDMAISAAIVAMGHSLGLSVLAEGVETPQQLAFLRERGCDAYQGYLCSRPLPAEEFAR CCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHCCCCCCCCCHHHHHH LLQAHNGMAG HHHHCCCCCC >Mature Secondary Structure MLRLSQHARPLQECGLLSKGAGRRPSWRPLQGRWMLALAVGAMGAAWAWAGAAALQYLPL CCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHCCCC EPQALQTLLQYKSGLDAVLAGALLGWLLLRWRRGGSRRTLARRVEQVLRHAPAGMARLSM CHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCEEECC DGRLVWANERLREWLGVAPHEPLPQVDFRTLVRPHDSDWAQRQLQRLRAGEIDHYQGERW CCEEEECHHHHHHHHCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCHHH CRNQRDGSQLPVLCTVSHVLALESEPDHLVCVLQSLREVHAARDAQALSEQRWRLAATVV HCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH DNTIEGVVVTDADGRILSVNPAVTRLMGYTEEELLGQNPRVFKSGRHGPAFYEAMWDTMR HCCCCEEEEECCCCCEEECCHHHHHHHCCCHHHHCCCCCCHHCCCCCCHHHHHHHHHHHH QTGHWQGEIWNRRKNGEVFPERMSLSAVRGADGAVTHYVCMFTDISEEKAQHQRLEFLAH HCCCCCCHHHCCCCCCCCCHHHHHHHHHCCCCCCHHEEEEEEECCHHHHHHHHHHHHHHH CDPLTGLPNRAWFGEQLDSAVRQAQDSGEQMALLLLNLDRFKDVNDSYGHAVGDEVLRHI CCCCCCCCCCCCCHHHHHHHHHHHHCCCHHEEHHHHHHHHHCCCCCCCCHHHHHHHHHHH TRQVEQSLRPGDLLGRLAGDEIAVLARHLRHADGAAAVARHLIAAASTPWCTPDGIQVVV HHHHHHCCCCHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCEEEE GVSVGICMFPAHARTTEALLQGAHSSVYGAKARGRGAYCFFDESLIQAARERLEIEARLR ECHHHHHCCCCCHHHHHHHHHCCCCHHCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHH VALAQGHLRLYYQPQVCIVTGRIMGAEALVRWLDPQEGMISPARFIPVAETSGVIGPLGQ HHEECCCEEEEECCCEEEEECCHHHHHHHHHHCCCCCCCCCCHHEEECCCCCCCHHHHHH WVMRAACEQGQRWRADGLPEIRLAINLSPRQFQLTDVAACAAEALKASGFPARCLELELT HHHHHHHHCCCCCCCCCCCEEEEEEECCCCEEEHHHHHHHHHHHHHCCCCCHHHHHHHHH ESVLAERPDEIRAVLQRLQQLGVRMAVDDFGTGYSSLAHLKRFPIDVLKIDQGFIRDIPR HHHHHCCCHHHHHHHHHHHHCCCEEEHHHCCCCHHHHHHHHHCCCHHEECCCHHHHHCCC SADDMAISAAIVAMGHSLGLSVLAEGVETPQQLAFLRERGCDAYQGYLCSRPLPAEEFAR CCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHCCCCCCCCCHHHHHH LLQAHNGMAG HHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9097039; 9278503 [H]