| Definition | Acidovorax ebreus TPSY chromosome, complete genome. |
|---|---|
| Accession | NC_011992 |
| Length | 3,796,573 |
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The map label for this gene is bugT [H]
Identifier: 222109338
GI number: 222109338
Start: 131870
End: 132865
Strand: Direct
Name: bugT [H]
Synonym: Dtpsy_0116
Alternate gene names: 222109338
Gene position: 131870-132865 (Clockwise)
Preceding gene: 222109337
Following gene: 222109339
Centisome position: 3.47
GC content: 69.68
Gene sequence:
>996_bases ATGTCACTGCCTCGTCCCTCGCGGCTGCGCCGCGCCTTGCTCGCCAGCATGGCCCTGACCGCCAGCGCCCTGCTGGCGCC CGTTGCCTACGCCGCGGACGCCTGGCCCGCCAAGCCGATCCAGCTCGTGATTCCCTACCCGCCTGGTGGCAGCGCCGACC TGCTGGGGCGCCCCTTGGCGATGCAGTTGCAGCAGCAGCTGGGCCAGCCCGTGGTGCTGGAGTACAAACCCGGGGCGGGC GGCACGCTGGCCTCGCAGTATGTGGCGCGGGCCAAGCCCGATGGCTACACCGTGTTCATGGTGCTGGCCGCGCATGCCAT CAACGACAGCCTCTACCCCAAGCTGCCCTACGACACGCGCAAGGACTTCGCCCCCGTGTCGCTGGTGGCCAACCTGCCCA TGGTGGTGGCGGCCAGCGGCAAGCTGCCTGCAAAAAACATCCATGAACTGATCCAGGCCGCCAAGGCGGCGCCGGGCAAG CTCACCTTTGGCTCGGCCGGCAACGGCAACACCGGGCACCTCGCGGCGGAATACTTCAGCAGCATTGCCGGGGTCAAGAT GACGCACGTGCCCTACAAAGGCAGCGCCGGCGTGGTCAATGCCATGCTGGCGGGTGACATCGACCTCACGTTCGACAGCA TCTCCACCTCCATGCCGCACATCCGCGGCGGGCGCATGCATGCGCTGGCCGTCACCAGCCCGCAGCGCTCGGCCCTGGCG CCCGAGGTGCCGACGGTGCAGGAGCAGGGCATGGCCGGCTTTGACGTGACCGGCTGGTATGCGCTGATCGCGCCAGCCGG CACGCCACCCGAGATTACCCAGCGCCTGAGCCGCGAGATCGCCGCCGCGCTGCGCCAGCCCCAGCTGCAATCCCAACTGG CCGCCGGCGGCTACGAGCCCGTGGGCTCCACCCCCGAGGCGCTGCAGGCGCACATCGAGCGCGAGATCACGCGCTGGGCC GCCGTGGTCAAGTCCACGGGGGCAAGAGTGGATTGA
Upstream 100 bases:
>100_bases CAGCGAGATCGGCAAGGTGCTCAAGCGCACGCTGCGCGAGCAGTACCTGCAAGCGGCGCCCATCGCCGGCTGACTTTCCT CTCACCACCCGGAGACTGCC
Downstream 100 bases:
>100_bases CACCCCCTGAGCCGCTGCGCCGCTTCCCCCCTCGCGGCTGCGCCGGGCAGGACGCAGCCAGCGCGGCGGCGCGGCCGGCA TAGGCCGGCATAGGCCCTTG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 331; Mature: 330
Protein sequence:
>331_residues MSLPRPSRLRRALLASMALTASALLAPVAYAADAWPAKPIQLVIPYPPGGSADLLGRPLAMQLQQQLGQPVVLEYKPGAG GTLASQYVARAKPDGYTVFMVLAAHAINDSLYPKLPYDTRKDFAPVSLVANLPMVVAASGKLPAKNIHELIQAAKAAPGK LTFGSAGNGNTGHLAAEYFSSIAGVKMTHVPYKGSAGVVNAMLAGDIDLTFDSISTSMPHIRGGRMHALAVTSPQRSALA PEVPTVQEQGMAGFDVTGWYALIAPAGTPPEITQRLSREIAAALRQPQLQSQLAAGGYEPVGSTPEALQAHIEREITRWA AVVKSTGARVD
Sequences:
>Translated_331_residues MSLPRPSRLRRALLASMALTASALLAPVAYAADAWPAKPIQLVIPYPPGGSADLLGRPLAMQLQQQLGQPVVLEYKPGAG GTLASQYVARAKPDGYTVFMVLAAHAINDSLYPKLPYDTRKDFAPVSLVANLPMVVAASGKLPAKNIHELIQAAKAAPGK LTFGSAGNGNTGHLAAEYFSSIAGVKMTHVPYKGSAGVVNAMLAGDIDLTFDSISTSMPHIRGGRMHALAVTSPQRSALA PEVPTVQEQGMAGFDVTGWYALIAPAGTPPEITQRLSREIAAALRQPQLQSQLAAGGYEPVGSTPEALQAHIEREITRWA AVVKSTGARVD >Mature_330_residues SLPRPSRLRRALLASMALTASALLAPVAYAADAWPAKPIQLVIPYPPGGSADLLGRPLAMQLQQQLGQPVVLEYKPGAGG TLASQYVARAKPDGYTVFMVLAAHAINDSLYPKLPYDTRKDFAPVSLVANLPMVVAASGKLPAKNIHELIQAAKAAPGKL TFGSAGNGNTGHLAAEYFSSIAGVKMTHVPYKGSAGVVNAMLAGDIDLTFDSISTSMPHIRGGRMHALAVTSPQRSALAP EVPTVQEQGMAGFDVTGWYALIAPAGTPPEITQRLSREIAAALRQPQLQSQLAAGGYEPVGSTPEALQAHIEREITRWAA VVKSTGARVD
Specific function: Unknown
COG id: COG3181
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Periplasm (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0065 (bug) family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005064 [H]
Pfam domain/function: PF03401 Bug [H]
EC number: NA
Molecular weight: Translated: 34711; Mature: 34580
Theoretical pI: Translated: 9.83; Mature: 9.83
Prosite motif: PS00435 PEROXIDASE_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLPRPSRLRRALLASMALTASALLAPVAYAADAWPAKPIQLVIPYPPGGSADLLGRPLA CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHCCHHH MQLQQQLGQPVVLEYKPGAGGTLASQYVARAKPDGYTVFMVLAAHAINDSLYPKLPYDTR HHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCCCEEHHHHHHHHHCCCCCCCCCCCCC KDFAPVSLVANLPMVVAASGKLPAKNIHELIQAAKAAPGKLTFGSAGNGNTGHLAAEYFS CCCCHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHCCCCCEEECCCCCCCCCHHHHHHHH SIAGVKMTHVPYKGSAGVVNAMLAGDIDLTFDSISTSMPHIRGGRMHALAVTSPQRSALA HHCCCEEEECCCCCCCCHHHHHHHCCCEEEHHHHHCCCCCCCCCCEEEEEECCCCHHCCC PEVPTVQEQGMAGFDVTGWYALIAPAGTPPEITQRLSREIAAALRQPQLQSQLAAGGYEP CCCCCHHHCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCC VGSTPEALQAHIEREITRWAAVVKSTGARVD CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure SLPRPSRLRRALLASMALTASALLAPVAYAADAWPAKPIQLVIPYPPGGSADLLGRPLA CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHCCHHH MQLQQQLGQPVVLEYKPGAGGTLASQYVARAKPDGYTVFMVLAAHAINDSLYPKLPYDTR HHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCCCEEHHHHHHHHHCCCCCCCCCCCCC KDFAPVSLVANLPMVVAASGKLPAKNIHELIQAAKAAPGKLTFGSAGNGNTGHLAAEYFS CCCCHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHCCCCCEEECCCCCCCCCHHHHHHHH SIAGVKMTHVPYKGSAGVVNAMLAGDIDLTFDSISTSMPHIRGGRMHALAVTSPQRSALA HHCCCEEEECCCCCCCCHHHHHHHCCCEEEHHHHHCCCCCCCCCCEEEEEECCCCHHCCC PEVPTVQEQGMAGFDVTGWYALIAPAGTPPEITQRLSREIAAALRQPQLQSQLAAGGYEP CCCCCHHHCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCHHHHHHHCCCCCC VGSTPEALQAHIEREITRWAAVVKSTGARVD CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11111902; 12910271; 2873570 [H]