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The map label for this gene is ydhO [H]

Identifier: 222109244

GI number: 222109244

Start: 18899

End: 19381

Strand: Direct

Name: ydhO [H]

Synonym: Dtpsy_0019

Alternate gene names: 222109244

Gene position: 18899-19381 (Clockwise)

Preceding gene: 222109242

Following gene: 222109245

Centisome position: 0.5

GC content: 70.6

Gene sequence:

>483_bases
ATGCGCGCCTTTGCCCTTCCCGTCCTGACGCTCGCGGCCAGCCTGCTGGTGGTGGGCTGCGGCACCACGCCGCCCACCTC
TGCCTCGCGCAACGCCGCCTATTCCCGCCTGTCGCCCGAGCAGTCGAGCGACATCGCCATCCATGCCCTGGGACTGGTGG
GCACGCCCTACCGCTACGGTGGCAATACGCCCGACAGCGGCTTTGACTGCAGCGGCCTCATCGGCTACGTGTACACCAGC
CGCGCGGGCGTGGCCCCGCCGCGCACGGTGGCCCAGTTGAGCGGCTTCGGCCAATCCATCGACGCGGACGAGCTGCGCAC
GGGCGACCTGGTGGTGTTCGGCCGCGGCCGGCCCACGCATGCCGGCATTTATGTGGGAGAGGGGCGCTTCGTACATGCGC
CGTCCAGCGGCGGCACGGTGCGCCTGGACCACCTGAAGTCGCGCTACTGGTCGCAACAGTTCGCGAGCTTCCGGCGCCCC
TGA

Upstream 100 bases:

>100_bases
AAAAAATGACCCCAAAAAACGTTGCAAAAGTAGGAGAAAGCGCGTTCGGGCGTGGGGTGTTGGCTGCGCCATCGCGCCGC
GGCTGCTACGCTTGACCCCC

Downstream 100 bases:

>100_bases
ACTTCCACGGCGCCACTTGCGGCGGCCACAGGCGGTGTTACCTTCCTTCACCGCCACCTGCCGCCGGGGCAGGGCGCCGA
ACTCCCCGGACAGGCGCTCA

Product: nlp/p60 protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 160; Mature: 160

Protein sequence:

>160_residues
MRAFALPVLTLAASLLVVGCGTTPPTSASRNAAYSRLSPEQSSDIAIHALGLVGTPYRYGGNTPDSGFDCSGLIGYVYTS
RAGVAPPRTVAQLSGFGQSIDADELRTGDLVVFGRGRPTHAGIYVGEGRFVHAPSSGGTVRLDHLKSRYWSQQFASFRRP

Sequences:

>Translated_160_residues
MRAFALPVLTLAASLLVVGCGTTPPTSASRNAAYSRLSPEQSSDIAIHALGLVGTPYRYGGNTPDSGFDCSGLIGYVYTS
RAGVAPPRTVAQLSGFGQSIDADELRTGDLVVFGRGRPTHAGIYVGEGRFVHAPSSGGTVRLDHLKSRYWSQQFASFRRP
>Mature_160_residues
MRAFALPVLTLAASLLVVGCGTTPPTSASRNAAYSRLSPEQSSDIAIHALGLVGTPYRYGGNTPDSGFDCSGLIGYVYTS
RAGVAPPRTVAQLSGFGQSIDADELRTGDLVVFGRGRPTHAGIYVGEGRFVHAPSSGGTVRLDHLKSRYWSQQFASFRRP

Specific function: Unknown

COG id: COG0791

COG function: function code M; Cell wall-associated hydrolases (invasion-associated proteins)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nlpC/p60 family [H]

Homologues:

Organism=Escherichia coli, GI1787944, Length=126, Percent_Identity=36.5079365079365, Blast_Score=101, Evalue=2e-23,
Organism=Escherichia coli, GI1786421, Length=123, Percent_Identity=36.5853658536585, Blast_Score=93, Evalue=8e-21,
Organism=Escherichia coli, GI1788501, Length=107, Percent_Identity=37.3831775700935, Blast_Score=80, Evalue=8e-17,
Organism=Escherichia coli, GI1788001, Length=109, Percent_Identity=42.2018348623853, Blast_Score=79, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000064 [H]

Pfam domain/function: PF00877 NLPC_P60 [H]

EC number: NA

Molecular weight: Translated: 16918; Mature: 16918

Theoretical pI: Translated: 9.73; Mature: 9.73

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRAFALPVLTLAASLLVVGCGTTPPTSASRNAAYSRLSPEQSSDIAIHALGLVGTPYRYG
CCCHHHHHHHHHHHHHEEECCCCCCCCCCCCCHHHHCCCCCCCCEEEEEECCCCCCCCCC
GNTPDSGFDCSGLIGYVYTSRAGVAPPRTVAQLSGFGQSIDADELRTGDLVVFGRGRPTH
CCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCC
AGIYVGEGRFVHAPSSGGTVRLDHLKSRYWSQQFASFRRP
CEEEECCCEEEECCCCCCEEEHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRAFALPVLTLAASLLVVGCGTTPPTSASRNAAYSRLSPEQSSDIAIHALGLVGTPYRYG
CCCHHHHHHHHHHHHHEEECCCCCCCCCCCCCHHHHCCCCCCCCEEEEEECCCCCCCCCC
GNTPDSGFDCSGLIGYVYTSRAGVAPPRTVAQLSGFGQSIDADELRTGDLVVFGRGRPTH
CCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCC
AGIYVGEGRFVHAPSSGGTVRLDHLKSRYWSQQFASFRRP
CEEEECCCEEEECCCCCCEEEHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]