| Definition | Agrobacterium vitis S4 plasmid pAtS4e, complete sequence. |
|---|---|
| Accession | NC_011981 |
| Length | 631,775 |
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The map label for this gene is 222102827
Identifier: 222102827
GI number: 222102827
Start: 499389
End: 500414
Strand: Reverse
Name: 222102827
Synonym: Avi_7552
Alternate gene names: NA
Gene position: 500414-499389 (Counterclockwise)
Preceding gene: 222102829
Following gene: 222102826
Centisome position: 79.21
GC content: 55.56
Gene sequence:
>1026_bases ATGGACACGGCAGATGAGATCTTGGCGATACCGGTGAACGAGCCTGAGCGCCTGTTTCAGGCACCGGATCAAATCACTGG CCAGTATCACAGACTAGCCAAGCTGTGGCATACAGACCATGCCGGCGGTCAACGCGATGTGTTTGAACATCTGACGCTGT TGCGGGACGAGGCAAACCTCCACGTCAGCCAAGGCCGCTGGCAAGTGCCCGGTTTGCTTGAGCTCGCTGGTCGCAAGATA AGGTATTTCAAATCATACCCCTTCGAACTCGGAACGGCTTACGTGGGTAACAGCATCATTGCCTACGTGGTGGAAAAGGA TTTCCTGTCTTTGGCCCACCGGGCCGAGGCTGCCATCAGAGGGCTGACGTTTGCCAACGATAGAATGGCCACCGAGATGC TCCTGCGGCTGCCACAGATCAAATCAGCCTTTGATACCGATCAGGGTCAGCGTGTTCTGGTGATGGAAAAGCCCGCTGGG CTTGTCCGACTGAGTGATTTGATCTCGCATTTCGGCAGCAAGGTGGACCCACGGCACGTTGCTTGGGTTATGAGCGACCT GCTGAACACAGCTTGTTACCTTGGCTCCTTTCGTCAGCTCGCTCATGCGGGCTTGTGTACTGATACCGTCTTTATCTCCC CGAAAGGACATGTCGCGGTCATCCTTGGCGGTTGGTTCTATTCAACGCCGCTGAATGAGCCTCTGGTTGCGCTTCCAGAG TGGACGGATCAGCTTTTGCCCGCCGCTGCTCGAAATACCGAGCGCGCAAGTGGAGCGATCGATCTCGAACTCATCCGAGG CATCGGAAGGGAAATGCTGGGCGAAACCTCCGGTGTGAGTATCGGCGAAGACAACGCTATTCCGCAGGCTATGCGGGATT GGCTTCAACGTCCTAGCGGTCTCGATGCCAAAGGCGAATACAGAGCTTGGATCAAGGCTCTTGAAGACAGCTTCGGTGCT CGTCGCTTCACCGAACTGTCCGTTAACGCAAGCGATGTTTATGGAAAGGATGCCCACAATGGGTGA
Upstream 100 bases:
>100_bases GCTCCGATAGCCAGCAAAAACAGACTTAGACGGTATTGACGCCTAAGTCCAGAAGGCGCATATCGTAGTTAGACGATTAT CTGGTCTAAGGGTTATCGAT
Downstream 100 bases:
>100_bases CGGCCGCTTTGACCCAACTGACTGGGATAGCTTCACAACCAGGACTACGGCAGGCAAAACGCGGGACGCGGTGTTTTCCA GTCGCAGCCTCCATGACAGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 341; Mature: 341
Protein sequence:
>341_residues MDTADEILAIPVNEPERLFQAPDQITGQYHRLAKLWHTDHAGGQRDVFEHLTLLRDEANLHVSQGRWQVPGLLELAGRKI RYFKSYPFELGTAYVGNSIIAYVVEKDFLSLAHRAEAAIRGLTFANDRMATEMLLRLPQIKSAFDTDQGQRVLVMEKPAG LVRLSDLISHFGSKVDPRHVAWVMSDLLNTACYLGSFRQLAHAGLCTDTVFISPKGHVAVILGGWFYSTPLNEPLVALPE WTDQLLPAAARNTERASGAIDLELIRGIGREMLGETSGVSIGEDNAIPQAMRDWLQRPSGLDAKGEYRAWIKALEDSFGA RRFTELSVNASDVYGKDAHNG
Sequences:
>Translated_341_residues MDTADEILAIPVNEPERLFQAPDQITGQYHRLAKLWHTDHAGGQRDVFEHLTLLRDEANLHVSQGRWQVPGLLELAGRKI RYFKSYPFELGTAYVGNSIIAYVVEKDFLSLAHRAEAAIRGLTFANDRMATEMLLRLPQIKSAFDTDQGQRVLVMEKPAG LVRLSDLISHFGSKVDPRHVAWVMSDLLNTACYLGSFRQLAHAGLCTDTVFISPKGHVAVILGGWFYSTPLNEPLVALPE WTDQLLPAAARNTERASGAIDLELIRGIGREMLGETSGVSIGEDNAIPQAMRDWLQRPSGLDAKGEYRAWIKALEDSFGA RRFTELSVNASDVYGKDAHNG >Mature_341_residues MDTADEILAIPVNEPERLFQAPDQITGQYHRLAKLWHTDHAGGQRDVFEHLTLLRDEANLHVSQGRWQVPGLLELAGRKI RYFKSYPFELGTAYVGNSIIAYVVEKDFLSLAHRAEAAIRGLTFANDRMATEMLLRLPQIKSAFDTDQGQRVLVMEKPAG LVRLSDLISHFGSKVDPRHVAWVMSDLLNTACYLGSFRQLAHAGLCTDTVFISPKGHVAVILGGWFYSTPLNEPLVALPE WTDQLLPAAARNTERASGAIDLELIRGIGREMLGETSGVSIGEDNAIPQAMRDWLQRPSGLDAKGEYRAWIKALEDSFGA RRFTELSVNASDVYGKDAHNG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 37863; Mature: 37863
Theoretical pI: Translated: 6.13; Mature: 6.13
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDTADEILAIPVNEPERLFQAPDQITGQYHRLAKLWHTDHAGGQRDVFEHLTLLRDEANL CCCCCCEEEECCCCHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCE HVSQGRWQVPGLLELAGRKIRYFKSYPFELGTAYVGNSIIAYVVEKDFLSLAHRAEAAIR EEECCCCCCCCHHHHCCCHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH GLTFANDRMATEMLLRLPQIKSAFDTDQGQRVLVMEKPAGLVRLSDLISHFGSKVDPRHV CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCHHHH AWVMSDLLNTACYLGSFRQLAHAGLCTDTVFISPKGHVAVILGGWFYSTPLNEPLVALPE HHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCEEEEECCEEECCCCCCCCEECCC WTDQLLPAAARNTERASGAIDLELIRGIGREMLGETSGVSIGEDNAIPQAMRDWLQRPSG HHHHHHHHHHCCCHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCC LDAKGEYRAWIKALEDSFGARRFTELSVNASDVYGKDAHNG CCCCCHHHHHHHHHHHHHCCCEEEEEECCHHHCCCCCCCCC >Mature Secondary Structure MDTADEILAIPVNEPERLFQAPDQITGQYHRLAKLWHTDHAGGQRDVFEHLTLLRDEANL CCCCCCEEEECCCCHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCE HVSQGRWQVPGLLELAGRKIRYFKSYPFELGTAYVGNSIIAYVVEKDFLSLAHRAEAAIR EEECCCCCCCCHHHHCCCHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH GLTFANDRMATEMLLRLPQIKSAFDTDQGQRVLVMEKPAGLVRLSDLISHFGSKVDPRHV CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCHHHH AWVMSDLLNTACYLGSFRQLAHAGLCTDTVFISPKGHVAVILGGWFYSTPLNEPLVALPE HHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCEEEEECCEEECCCCCCCCEECCC WTDQLLPAAARNTERASGAIDLELIRGIGREMLGETSGVSIGEDNAIPQAMRDWLQRPSG HHHHHHHHHHCCCHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCC LDAKGEYRAWIKALEDSFGARRFTELSVNASDVYGKDAHNG CCCCCHHHHHHHHHHHHHCCCEEEEEECCHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA