| Definition | Agrobacterium vitis S4 plasmid pAtS4e, complete sequence. |
|---|---|
| Accession | NC_011981 |
| Length | 631,775 |
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The map label for this gene is yehM [H]
Identifier: 222102823
GI number: 222102823
Start: 493596
End: 495890
Strand: Reverse
Name: yehM [H]
Synonym: Avi_7548
Alternate gene names: 222102823
Gene position: 495890-493596 (Counterclockwise)
Preceding gene: 222102824
Following gene: 222102822
Centisome position: 78.49
GC content: 65.27
Gene sequence:
>2295_bases GTGGCGCAGGATCGCGGCGGCAGGCTGACGGTCGTCGGCGTGCGTCATCATTCACCAGCCTGTGCGCGCTTGGTCTCCCA GACAGTCGAGCGGCTGAAGCCGCGCTTCGTGCTGATCGAAGGCCCAGCAGACTTCAATCCTCATATGAACGACCTGCGAC TGCCACATACGCTGCCCGTCGCAATCTTCAGCTATCACGCGGCTGCGGAGCGGAGCTTCGCCTCCTACTCGCCGTTCTGC GCCTATTCGCCGGAGTGGGAGGCGCTGCAATCTGCATGGAAGGTCGGCGCTACTCCGTTATTTTGCGACCTGCCGGCTTG GCATCCTGACTTCGGCAACCGGACCAATCGCTACGCCGACCCACATACGGTTCGCGCCGCGGCGGCCGAGGCCGCGCTCG GCCACGCGCTGGGTGAAGATGGCCTGGATGCTCTATGGGACGCGCTGGCTGAGCAGGCGCCGGTGGCGGAGCTTGATGAA CGGCTCGACCGCTATTTCGACCTGCTGCGGCCGGAGGGTGCCGAAGATCCACGGGAACTGGCCCGCGAAAAATTCATGGC TGGCCATGCGGCCTGGGCGCTGCGCGAAGCCGGTATTGGCAAGGTGGTGCTGATCTGCGGCGGCTGGCATGCCGAAGCAA TCCGTCGACTGACCGAGGAAATGGACGGCGAAAAGCCCGACATGCCTGAACCGGGCGAGCATGAACGGGTCGGCAGCTAT GTATTGCCCTATGACTATCAACGGCTCGACCGTTTCACCGGCTATGCCTCAGGCATGCCCTCACCCGCCTATTACGAACA TGTCCGGGAACGCGGTCTCGGCTTTGCCGCAGACTGGGCCGCCAACGCGATCACCCATGGCCTGAGGGATGCGGGCCAGG TGGTCTCCACCGCCGACCGGATCGCTTGGCAGGCCCATGCCGAAGGTTTGGCCCGAGCCCGCGGCCACAGCGCCATTCTG CGCGTCGATCTACTCGATGCCGCGCTGGCGACGTTGGTGAAGGATGGGCTGGAGGCACCGGCCGCCTGGACCCAGGCTGG CGCGGTCAGATCAGGCACCCACCCGGCGCTCGTTGCCATGTTGAAAGCCATGACCGGAAACAGGCGCGGCCGGCTTGCTG CCGGCACCCGCCGGCCACCACTGCTCGACGATATCGACGCCCGGCTGCTCGAAGCCGATATGGTGCCCGGCCCGACCGCA AGGCGTCTGGAGCTTGACTGGAACGAGCCCGCCGATCGCGGCCAGGCCCACATGCTGCATGCTCTGAGGCTTCTGCGCAT GCCGGGGCTGGAGCGGCTGGAAGGGCCTTCGGCGATTGAGACCAGGGCGCCGCTGGAGGTTTTCCGCTTGATTCGCCACC GCGATGCCGAAGGCGTGCTCATCGAAGCCTCCAGATGGGGAGGCACGCTGCCAATGGCTTCGTCGGGTCTGCTCGCCGAT CGGGTCGCCCGCGCGGGCGATGATCTGGACGTGCTGACATCCTGCCTGTCCGACGCGCTGTTCGCCGGGCTGCTCGTCCT CGAAAGCGAACTGACGGGCAAGATCGCATCCGGCATTGCCCGCTCTCACGAGATCGGCGAGATCGGCAAGGCCGGTCTCC AAGCCGTGCGACTGTATCGCTTCGGACATATCTTTGGCAGCCATGCGCACCAGGCGCTGGGGCGGCTGTGCGAGCAGATA TTCGCGCGCGTCCTGTGGCTTGTCGGAGACATCCACAATGAGGACGAAGGACGCCGCTCCCTCAACGCCTTGATCGCCTG CCGCGACATGATGCGCGATTGCCCATCACTCGATATCGACAGCGAAGCGCTGGTCGGAACGCTTGCTCGCTGCGTCGCCA ACCGCTCCACCATTTCGGCGCTGGCGGGTGCTGCCCTTGGCACGATGATCGCCTGCGGTCGCAGCGACATCTCCGGCATT GCAAGCCAGATGCGCCATTTCAGCCGACCAACTCAGCTCGGCGATTTTCTCGCCGGCCTCTTTGCCCTTTCCCGCGAGGA GATCGCCGCGGATCTGCCGGTCATCGACGCCGTCACGCAGCTGGTTGACGACTGGGGAGATGACGAATTCCTGCAAGCGC TGCCAGCGCTGCGCCAGGCATTTTCCTTCTTCCCACCTCGGGAGCGCGAAAAGCTTGCCCAGGTGATCCTGCGCACCCAT GGACGCGGGGAGGCACGGGCGCAGATCGAAGCCATGCAATGGATGCGCCAGCGCAGCAGCACAGAGACTCAGGCGGCGGC GCTGGCTTTGGAAGCAGTGGTGGAGCGGCGGCTCACCCGCGCTGGATTGATATGA
Upstream 100 bases:
>100_bases AAGCTTGTACGCTATCTGGAGCAGAAGGCGTCGAAGCGGCCCGGTGCAGCATGGAAGGCGCTCTATGAGGCTCGGCATCT TCTCACGCCCTGAGGCGGAC
Downstream 100 bases:
>100_bases CCAGAAAGATGAGGAGATAGGGATGGAACGCTACGAACTCGTTGAGGGCACATCATCGAAATTCTGGCAGGTCTCGCTTG ACGGAACGACCCTGACGGTC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 764; Mature: 763
Protein sequence:
>764_residues MAQDRGGRLTVVGVRHHSPACARLVSQTVERLKPRFVLIEGPADFNPHMNDLRLPHTLPVAIFSYHAAAERSFASYSPFC AYSPEWEALQSAWKVGATPLFCDLPAWHPDFGNRTNRYADPHTVRAAAAEAALGHALGEDGLDALWDALAEQAPVAELDE RLDRYFDLLRPEGAEDPRELAREKFMAGHAAWALREAGIGKVVLICGGWHAEAIRRLTEEMDGEKPDMPEPGEHERVGSY VLPYDYQRLDRFTGYASGMPSPAYYEHVRERGLGFAADWAANAITHGLRDAGQVVSTADRIAWQAHAEGLARARGHSAIL RVDLLDAALATLVKDGLEAPAAWTQAGAVRSGTHPALVAMLKAMTGNRRGRLAAGTRRPPLLDDIDARLLEADMVPGPTA RRLELDWNEPADRGQAHMLHALRLLRMPGLERLEGPSAIETRAPLEVFRLIRHRDAEGVLIEASRWGGTLPMASSGLLAD RVARAGDDLDVLTSCLSDALFAGLLVLESELTGKIASGIARSHEIGEIGKAGLQAVRLYRFGHIFGSHAHQALGRLCEQI FARVLWLVGDIHNEDEGRRSLNALIACRDMMRDCPSLDIDSEALVGTLARCVANRSTISALAGAALGTMIACGRSDISGI ASQMRHFSRPTQLGDFLAGLFALSREEIAADLPVIDAVTQLVDDWGDDEFLQALPALRQAFSFFPPREREKLAQVILRTH GRGEARAQIEAMQWMRQRSSTETQAAALALEAVVERRLTRAGLI
Sequences:
>Translated_764_residues MAQDRGGRLTVVGVRHHSPACARLVSQTVERLKPRFVLIEGPADFNPHMNDLRLPHTLPVAIFSYHAAAERSFASYSPFC AYSPEWEALQSAWKVGATPLFCDLPAWHPDFGNRTNRYADPHTVRAAAAEAALGHALGEDGLDALWDALAEQAPVAELDE RLDRYFDLLRPEGAEDPRELAREKFMAGHAAWALREAGIGKVVLICGGWHAEAIRRLTEEMDGEKPDMPEPGEHERVGSY VLPYDYQRLDRFTGYASGMPSPAYYEHVRERGLGFAADWAANAITHGLRDAGQVVSTADRIAWQAHAEGLARARGHSAIL RVDLLDAALATLVKDGLEAPAAWTQAGAVRSGTHPALVAMLKAMTGNRRGRLAAGTRRPPLLDDIDARLLEADMVPGPTA RRLELDWNEPADRGQAHMLHALRLLRMPGLERLEGPSAIETRAPLEVFRLIRHRDAEGVLIEASRWGGTLPMASSGLLAD RVARAGDDLDVLTSCLSDALFAGLLVLESELTGKIASGIARSHEIGEIGKAGLQAVRLYRFGHIFGSHAHQALGRLCEQI FARVLWLVGDIHNEDEGRRSLNALIACRDMMRDCPSLDIDSEALVGTLARCVANRSTISALAGAALGTMIACGRSDISGI ASQMRHFSRPTQLGDFLAGLFALSREEIAADLPVIDAVTQLVDDWGDDEFLQALPALRQAFSFFPPREREKLAQVILRTH GRGEARAQIEAMQWMRQRSSTETQAAALALEAVVERRLTRAGLI >Mature_763_residues AQDRGGRLTVVGVRHHSPACARLVSQTVERLKPRFVLIEGPADFNPHMNDLRLPHTLPVAIFSYHAAAERSFASYSPFCA YSPEWEALQSAWKVGATPLFCDLPAWHPDFGNRTNRYADPHTVRAAAAEAALGHALGEDGLDALWDALAEQAPVAELDER LDRYFDLLRPEGAEDPRELAREKFMAGHAAWALREAGIGKVVLICGGWHAEAIRRLTEEMDGEKPDMPEPGEHERVGSYV LPYDYQRLDRFTGYASGMPSPAYYEHVRERGLGFAADWAANAITHGLRDAGQVVSTADRIAWQAHAEGLARARGHSAILR VDLLDAALATLVKDGLEAPAAWTQAGAVRSGTHPALVAMLKAMTGNRRGRLAAGTRRPPLLDDIDARLLEADMVPGPTAR RLELDWNEPADRGQAHMLHALRLLRMPGLERLEGPSAIETRAPLEVFRLIRHRDAEGVLIEASRWGGTLPMASSGLLADR VARAGDDLDVLTSCLSDALFAGLLVLESELTGKIASGIARSHEIGEIGKAGLQAVRLYRFGHIFGSHAHQALGRLCEQIF ARVLWLVGDIHNEDEGRRSLNALIACRDMMRDCPSLDIDSEALVGTLARCVANRSTISALAGAALGTMIACGRSDISGIA SQMRHFSRPTQLGDFLAGLFALSREEIAADLPVIDAVTQLVDDWGDDEFLQALPALRQAFSFFPPREREKLAQVILRTHG RGEARAQIEAMQWMRQRSSTETQAAALALEAVVERRLTRAGLI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1788439, Length=723, Percent_Identity=34.1632088520055, Blast_Score=335, Evalue=5e-93,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 83509; Mature: 83378
Theoretical pI: Translated: 6.26; Mature: 6.26
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAQDRGGRLTVVGVRHHSPACARLVSQTVERLKPRFVLIEGPADFNPHMNDLRLPHTLPV CCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCHHHH AIFSYHAAAERSFASYSPFCAYSPEWEALQSAWKVGATPLFCDLPAWHPDFGNRTNRYAD HHHHHHHHHHHCHHCCCCCCCCCCCHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCC PHTVRAAAAEAALGHALGEDGLDALWDALAEQAPVAELDERLDRYFDLLRPEGAEDPREL CHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCHHHH AREKFMAGHAAWALREAGIGKVVLICGGWHAEAIRRLTEEMDGEKPDMPEPGEHERVGSY HHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCHHCCCE VLPYDYQRLDRFTGYASGMPSPAYYEHVRERGLGFAADWAANAITHGLRDAGQVVSTADR ECCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH IAWQAHAEGLARARGHSAILRVDLLDAALATLVKDGLEAPAAWTQAGAVRSGTHPALVAM HHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCHHHHHH LKAMTGNRRGRLAAGTRRPPLLDDIDARLLEADMVPGPTARRLELDWNEPADRGQAHMLH HHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHHH ALRLLRMPGLERLEGPSAIETRAPLEVFRLIRHRDAEGVLIEASRWGGTLPMASSGLLAD HHHHHHCCCHHHCCCCCCHHHCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHHH RVARAGDDLDVLTSCLSDALFAGLLVLESELTGKIASGIARSHEIGEIGKAGLQAVRLYR HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FGHIFGSHAHQALGRLCEQIFARVLWLVGDIHNEDEGRRSLNALIACRDMMRDCPSLDID HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC SEALVGTLARCVANRSTISALAGAALGTMIACGRSDISGIASQMRHFSRPTQLGDFLAGL HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHH FALSREEIAADLPVIDAVTQLVDDWGDDEFLQALPALRQAFSFFPPREREKLAQVILRTH HHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC GRGEARAQIEAMQWMRQRSSTETQAAALALEAVVERRLTRAGLI CCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure AQDRGGRLTVVGVRHHSPACARLVSQTVERLKPRFVLIEGPADFNPHMNDLRLPHTLPV CCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCHHHH AIFSYHAAAERSFASYSPFCAYSPEWEALQSAWKVGATPLFCDLPAWHPDFGNRTNRYAD HHHHHHHHHHHCHHCCCCCCCCCCCHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCC PHTVRAAAAEAALGHALGEDGLDALWDALAEQAPVAELDERLDRYFDLLRPEGAEDPREL CHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCHHHH AREKFMAGHAAWALREAGIGKVVLICGGWHAEAIRRLTEEMDGEKPDMPEPGEHERVGSY HHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCHHCCCE VLPYDYQRLDRFTGYASGMPSPAYYEHVRERGLGFAADWAANAITHGLRDAGQVVSTADR ECCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH IAWQAHAEGLARARGHSAILRVDLLDAALATLVKDGLEAPAAWTQAGAVRSGTHPALVAM HHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCHHHHHH LKAMTGNRRGRLAAGTRRPPLLDDIDARLLEADMVPGPTARRLELDWNEPADRGQAHMLH HHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHHH ALRLLRMPGLERLEGPSAIETRAPLEVFRLIRHRDAEGVLIEASRWGGTLPMASSGLLAD HHHHHHCCCHHHCCCCCCHHHCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHHH RVARAGDDLDVLTSCLSDALFAGLLVLESELTGKIASGIARSHEIGEIGKAGLQAVRLYR HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FGHIFGSHAHQALGRLCEQIFARVLWLVGDIHNEDEGRRSLNALIACRDMMRDCPSLDID HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC SEALVGTLARCVANRSTISALAGAALGTMIACGRSDISGIASQMRHFSRPTQLGDFLAGL HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHH FALSREEIAADLPVIDAVTQLVDDWGDDEFLQALPALRQAFSFFPPREREKLAQVILRTH HHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC GRGEARAQIEAMQWMRQRSSTETQAAALALEAVVERRLTRAGLI CCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9278503 [H]