Definition Agrobacterium vitis S4 plasmid pAtS4e, complete sequence.
Accession NC_011981
Length 631,775

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The map label for this gene is yehM [H]

Identifier: 222102823

GI number: 222102823

Start: 493596

End: 495890

Strand: Reverse

Name: yehM [H]

Synonym: Avi_7548

Alternate gene names: 222102823

Gene position: 495890-493596 (Counterclockwise)

Preceding gene: 222102824

Following gene: 222102822

Centisome position: 78.49

GC content: 65.27

Gene sequence:

>2295_bases
GTGGCGCAGGATCGCGGCGGCAGGCTGACGGTCGTCGGCGTGCGTCATCATTCACCAGCCTGTGCGCGCTTGGTCTCCCA
GACAGTCGAGCGGCTGAAGCCGCGCTTCGTGCTGATCGAAGGCCCAGCAGACTTCAATCCTCATATGAACGACCTGCGAC
TGCCACATACGCTGCCCGTCGCAATCTTCAGCTATCACGCGGCTGCGGAGCGGAGCTTCGCCTCCTACTCGCCGTTCTGC
GCCTATTCGCCGGAGTGGGAGGCGCTGCAATCTGCATGGAAGGTCGGCGCTACTCCGTTATTTTGCGACCTGCCGGCTTG
GCATCCTGACTTCGGCAACCGGACCAATCGCTACGCCGACCCACATACGGTTCGCGCCGCGGCGGCCGAGGCCGCGCTCG
GCCACGCGCTGGGTGAAGATGGCCTGGATGCTCTATGGGACGCGCTGGCTGAGCAGGCGCCGGTGGCGGAGCTTGATGAA
CGGCTCGACCGCTATTTCGACCTGCTGCGGCCGGAGGGTGCCGAAGATCCACGGGAACTGGCCCGCGAAAAATTCATGGC
TGGCCATGCGGCCTGGGCGCTGCGCGAAGCCGGTATTGGCAAGGTGGTGCTGATCTGCGGCGGCTGGCATGCCGAAGCAA
TCCGTCGACTGACCGAGGAAATGGACGGCGAAAAGCCCGACATGCCTGAACCGGGCGAGCATGAACGGGTCGGCAGCTAT
GTATTGCCCTATGACTATCAACGGCTCGACCGTTTCACCGGCTATGCCTCAGGCATGCCCTCACCCGCCTATTACGAACA
TGTCCGGGAACGCGGTCTCGGCTTTGCCGCAGACTGGGCCGCCAACGCGATCACCCATGGCCTGAGGGATGCGGGCCAGG
TGGTCTCCACCGCCGACCGGATCGCTTGGCAGGCCCATGCCGAAGGTTTGGCCCGAGCCCGCGGCCACAGCGCCATTCTG
CGCGTCGATCTACTCGATGCCGCGCTGGCGACGTTGGTGAAGGATGGGCTGGAGGCACCGGCCGCCTGGACCCAGGCTGG
CGCGGTCAGATCAGGCACCCACCCGGCGCTCGTTGCCATGTTGAAAGCCATGACCGGAAACAGGCGCGGCCGGCTTGCTG
CCGGCACCCGCCGGCCACCACTGCTCGACGATATCGACGCCCGGCTGCTCGAAGCCGATATGGTGCCCGGCCCGACCGCA
AGGCGTCTGGAGCTTGACTGGAACGAGCCCGCCGATCGCGGCCAGGCCCACATGCTGCATGCTCTGAGGCTTCTGCGCAT
GCCGGGGCTGGAGCGGCTGGAAGGGCCTTCGGCGATTGAGACCAGGGCGCCGCTGGAGGTTTTCCGCTTGATTCGCCACC
GCGATGCCGAAGGCGTGCTCATCGAAGCCTCCAGATGGGGAGGCACGCTGCCAATGGCTTCGTCGGGTCTGCTCGCCGAT
CGGGTCGCCCGCGCGGGCGATGATCTGGACGTGCTGACATCCTGCCTGTCCGACGCGCTGTTCGCCGGGCTGCTCGTCCT
CGAAAGCGAACTGACGGGCAAGATCGCATCCGGCATTGCCCGCTCTCACGAGATCGGCGAGATCGGCAAGGCCGGTCTCC
AAGCCGTGCGACTGTATCGCTTCGGACATATCTTTGGCAGCCATGCGCACCAGGCGCTGGGGCGGCTGTGCGAGCAGATA
TTCGCGCGCGTCCTGTGGCTTGTCGGAGACATCCACAATGAGGACGAAGGACGCCGCTCCCTCAACGCCTTGATCGCCTG
CCGCGACATGATGCGCGATTGCCCATCACTCGATATCGACAGCGAAGCGCTGGTCGGAACGCTTGCTCGCTGCGTCGCCA
ACCGCTCCACCATTTCGGCGCTGGCGGGTGCTGCCCTTGGCACGATGATCGCCTGCGGTCGCAGCGACATCTCCGGCATT
GCAAGCCAGATGCGCCATTTCAGCCGACCAACTCAGCTCGGCGATTTTCTCGCCGGCCTCTTTGCCCTTTCCCGCGAGGA
GATCGCCGCGGATCTGCCGGTCATCGACGCCGTCACGCAGCTGGTTGACGACTGGGGAGATGACGAATTCCTGCAAGCGC
TGCCAGCGCTGCGCCAGGCATTTTCCTTCTTCCCACCTCGGGAGCGCGAAAAGCTTGCCCAGGTGATCCTGCGCACCCAT
GGACGCGGGGAGGCACGGGCGCAGATCGAAGCCATGCAATGGATGCGCCAGCGCAGCAGCACAGAGACTCAGGCGGCGGC
GCTGGCTTTGGAAGCAGTGGTGGAGCGGCGGCTCACCCGCGCTGGATTGATATGA

Upstream 100 bases:

>100_bases
AAGCTTGTACGCTATCTGGAGCAGAAGGCGTCGAAGCGGCCCGGTGCAGCATGGAAGGCGCTCTATGAGGCTCGGCATCT
TCTCACGCCCTGAGGCGGAC

Downstream 100 bases:

>100_bases
CCAGAAAGATGAGGAGATAGGGATGGAACGCTACGAACTCGTTGAGGGCACATCATCGAAATTCTGGCAGGTCTCGCTTG
ACGGAACGACCCTGACGGTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 764; Mature: 763

Protein sequence:

>764_residues
MAQDRGGRLTVVGVRHHSPACARLVSQTVERLKPRFVLIEGPADFNPHMNDLRLPHTLPVAIFSYHAAAERSFASYSPFC
AYSPEWEALQSAWKVGATPLFCDLPAWHPDFGNRTNRYADPHTVRAAAAEAALGHALGEDGLDALWDALAEQAPVAELDE
RLDRYFDLLRPEGAEDPRELAREKFMAGHAAWALREAGIGKVVLICGGWHAEAIRRLTEEMDGEKPDMPEPGEHERVGSY
VLPYDYQRLDRFTGYASGMPSPAYYEHVRERGLGFAADWAANAITHGLRDAGQVVSTADRIAWQAHAEGLARARGHSAIL
RVDLLDAALATLVKDGLEAPAAWTQAGAVRSGTHPALVAMLKAMTGNRRGRLAAGTRRPPLLDDIDARLLEADMVPGPTA
RRLELDWNEPADRGQAHMLHALRLLRMPGLERLEGPSAIETRAPLEVFRLIRHRDAEGVLIEASRWGGTLPMASSGLLAD
RVARAGDDLDVLTSCLSDALFAGLLVLESELTGKIASGIARSHEIGEIGKAGLQAVRLYRFGHIFGSHAHQALGRLCEQI
FARVLWLVGDIHNEDEGRRSLNALIACRDMMRDCPSLDIDSEALVGTLARCVANRSTISALAGAALGTMIACGRSDISGI
ASQMRHFSRPTQLGDFLAGLFALSREEIAADLPVIDAVTQLVDDWGDDEFLQALPALRQAFSFFPPREREKLAQVILRTH
GRGEARAQIEAMQWMRQRSSTETQAAALALEAVVERRLTRAGLI

Sequences:

>Translated_764_residues
MAQDRGGRLTVVGVRHHSPACARLVSQTVERLKPRFVLIEGPADFNPHMNDLRLPHTLPVAIFSYHAAAERSFASYSPFC
AYSPEWEALQSAWKVGATPLFCDLPAWHPDFGNRTNRYADPHTVRAAAAEAALGHALGEDGLDALWDALAEQAPVAELDE
RLDRYFDLLRPEGAEDPRELAREKFMAGHAAWALREAGIGKVVLICGGWHAEAIRRLTEEMDGEKPDMPEPGEHERVGSY
VLPYDYQRLDRFTGYASGMPSPAYYEHVRERGLGFAADWAANAITHGLRDAGQVVSTADRIAWQAHAEGLARARGHSAIL
RVDLLDAALATLVKDGLEAPAAWTQAGAVRSGTHPALVAMLKAMTGNRRGRLAAGTRRPPLLDDIDARLLEADMVPGPTA
RRLELDWNEPADRGQAHMLHALRLLRMPGLERLEGPSAIETRAPLEVFRLIRHRDAEGVLIEASRWGGTLPMASSGLLAD
RVARAGDDLDVLTSCLSDALFAGLLVLESELTGKIASGIARSHEIGEIGKAGLQAVRLYRFGHIFGSHAHQALGRLCEQI
FARVLWLVGDIHNEDEGRRSLNALIACRDMMRDCPSLDIDSEALVGTLARCVANRSTISALAGAALGTMIACGRSDISGI
ASQMRHFSRPTQLGDFLAGLFALSREEIAADLPVIDAVTQLVDDWGDDEFLQALPALRQAFSFFPPREREKLAQVILRTH
GRGEARAQIEAMQWMRQRSSTETQAAALALEAVVERRLTRAGLI
>Mature_763_residues
AQDRGGRLTVVGVRHHSPACARLVSQTVERLKPRFVLIEGPADFNPHMNDLRLPHTLPVAIFSYHAAAERSFASYSPFCA
YSPEWEALQSAWKVGATPLFCDLPAWHPDFGNRTNRYADPHTVRAAAAEAALGHALGEDGLDALWDALAEQAPVAELDER
LDRYFDLLRPEGAEDPRELAREKFMAGHAAWALREAGIGKVVLICGGWHAEAIRRLTEEMDGEKPDMPEPGEHERVGSYV
LPYDYQRLDRFTGYASGMPSPAYYEHVRERGLGFAADWAANAITHGLRDAGQVVSTADRIAWQAHAEGLARARGHSAILR
VDLLDAALATLVKDGLEAPAAWTQAGAVRSGTHPALVAMLKAMTGNRRGRLAAGTRRPPLLDDIDARLLEADMVPGPTAR
RLELDWNEPADRGQAHMLHALRLLRMPGLERLEGPSAIETRAPLEVFRLIRHRDAEGVLIEASRWGGTLPMASSGLLADR
VARAGDDLDVLTSCLSDALFAGLLVLESELTGKIASGIARSHEIGEIGKAGLQAVRLYRFGHIFGSHAHQALGRLCEQIF
ARVLWLVGDIHNEDEGRRSLNALIACRDMMRDCPSLDIDSEALVGTLARCVANRSTISALAGAALGTMIACGRSDISGIA
SQMRHFSRPTQLGDFLAGLFALSREEIAADLPVIDAVTQLVDDWGDDEFLQALPALRQAFSFFPPREREKLAQVILRTHG
RGEARAQIEAMQWMRQRSSTETQAAALALEAVVERRLTRAGLI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788439, Length=723, Percent_Identity=34.1632088520055, Blast_Score=335, Evalue=5e-93,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 83509; Mature: 83378

Theoretical pI: Translated: 6.26; Mature: 6.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQDRGGRLTVVGVRHHSPACARLVSQTVERLKPRFVLIEGPADFNPHMNDLRLPHTLPV
CCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCHHHH
AIFSYHAAAERSFASYSPFCAYSPEWEALQSAWKVGATPLFCDLPAWHPDFGNRTNRYAD
HHHHHHHHHHHCHHCCCCCCCCCCCHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCC
PHTVRAAAAEAALGHALGEDGLDALWDALAEQAPVAELDERLDRYFDLLRPEGAEDPREL
CHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCHHHH
AREKFMAGHAAWALREAGIGKVVLICGGWHAEAIRRLTEEMDGEKPDMPEPGEHERVGSY
HHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCHHCCCE
VLPYDYQRLDRFTGYASGMPSPAYYEHVRERGLGFAADWAANAITHGLRDAGQVVSTADR
ECCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
IAWQAHAEGLARARGHSAILRVDLLDAALATLVKDGLEAPAAWTQAGAVRSGTHPALVAM
HHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCHHHHHH
LKAMTGNRRGRLAAGTRRPPLLDDIDARLLEADMVPGPTARRLELDWNEPADRGQAHMLH
HHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHHH
ALRLLRMPGLERLEGPSAIETRAPLEVFRLIRHRDAEGVLIEASRWGGTLPMASSGLLAD
HHHHHHCCCHHHCCCCCCHHHCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHHH
RVARAGDDLDVLTSCLSDALFAGLLVLESELTGKIASGIARSHEIGEIGKAGLQAVRLYR
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FGHIFGSHAHQALGRLCEQIFARVLWLVGDIHNEDEGRRSLNALIACRDMMRDCPSLDID
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
SEALVGTLARCVANRSTISALAGAALGTMIACGRSDISGIASQMRHFSRPTQLGDFLAGL
HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHH
FALSREEIAADLPVIDAVTQLVDDWGDDEFLQALPALRQAFSFFPPREREKLAQVILRTH
HHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC
GRGEARAQIEAMQWMRQRSSTETQAAALALEAVVERRLTRAGLI
CCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
AQDRGGRLTVVGVRHHSPACARLVSQTVERLKPRFVLIEGPADFNPHMNDLRLPHTLPV
CCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCHHHH
AIFSYHAAAERSFASYSPFCAYSPEWEALQSAWKVGATPLFCDLPAWHPDFGNRTNRYAD
HHHHHHHHHHHCHHCCCCCCCCCCCHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCC
PHTVRAAAAEAALGHALGEDGLDALWDALAEQAPVAELDERLDRYFDLLRPEGAEDPREL
CHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCHHHH
AREKFMAGHAAWALREAGIGKVVLICGGWHAEAIRRLTEEMDGEKPDMPEPGEHERVGSY
HHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCHHCCCE
VLPYDYQRLDRFTGYASGMPSPAYYEHVRERGLGFAADWAANAITHGLRDAGQVVSTADR
ECCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
IAWQAHAEGLARARGHSAILRVDLLDAALATLVKDGLEAPAAWTQAGAVRSGTHPALVAM
HHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCHHHHHH
LKAMTGNRRGRLAAGTRRPPLLDDIDARLLEADMVPGPTARRLELDWNEPADRGQAHMLH
HHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHHH
ALRLLRMPGLERLEGPSAIETRAPLEVFRLIRHRDAEGVLIEASRWGGTLPMASSGLLAD
HHHHHHCCCHHHCCCCCCHHHCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHHH
RVARAGDDLDVLTSCLSDALFAGLLVLESELTGKIASGIARSHEIGEIGKAGLQAVRLYR
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FGHIFGSHAHQALGRLCEQIFARVLWLVGDIHNEDEGRRSLNALIACRDMMRDCPSLDID
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
SEALVGTLARCVANRSTISALAGAALGTMIACGRSDISGIASQMRHFSRPTQLGDFLAGL
HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHH
FALSREEIAADLPVIDAVTQLVDDWGDDEFLQALPALRQAFSFFPPREREKLAQVILRTH
HHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC
GRGEARAQIEAMQWMRQRSSTETQAAALALEAVVERRLTRAGLI
CCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]