| Definition | Agrobacterium vitis S4 plasmid pAtS4e, complete sequence. |
|---|---|
| Accession | NC_011981 |
| Length | 631,775 |
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The map label for this gene is yehP [H]
Identifier: 222102821
GI number: 222102821
Start: 488445
End: 489587
Strand: Reverse
Name: yehP [H]
Synonym: Avi_7544
Alternate gene names: 222102821
Gene position: 489587-488445 (Counterclockwise)
Preceding gene: 222102822
Following gene: 222102820
Centisome position: 77.49
GC content: 62.47
Gene sequence:
>1143_bases ATGAGCCAAGCCGCAGCACTTGACCCGCTCACCCGCTGGCGCCTTATCCTGGGCGAGGCGTCGGACGCTGCCTGCAGCGC TGCCGGCTGCACGATGTCGGGCGATGCCATGGCCATGGATGCAGCTCTCGACTGGCTCTACGGCCGTGATGATGAGGACG GCGCCCGCAATATCAGCCGTCAGGGCGGGCGCGGTCCCTCCGCCCTCACCACGCCGCAATGGATCAACGACATCCATCGG CTGTTTCCCAAGGAAACCATCGAGCGGCTGGAGCGCGATGCGATCGAGCATTATGCCATCGATGACATCGTGACCAATCC CGACGTCCTGTCGCGGGCCGAACCCAACGAGACACTGCTGAAGGCGGTTCTGCGGACCAAGCACCTGATGTCGCCTGACA TCCTTGTGATGGCACGCAAGCTGGTGCAGGAGGTCGTGCGCCAGCTGATGGAAAAGCTGTCGCGGGAGATGGCGGTCGCC TTTTCCGGCGTCGTTGATCGGCGGCGCCACAGCCGTTTCAAGATCGCCAGCGATCTCGATTTCCGTCGTGTTCTGAAGGA TAATCTCAAACACTACAATGCCGAAAGTCGACAGCTGACCGTAGAGAGGCTGCATTTCTTTGCCCGCAACCGCCGACATA TGAAGCAATGGCAGGTGATCCTCTTGGTCGACCAGAGCGGCTCTATGCTCGACTCCGTCATCCATTCCGCCGTGACGGCG GCCTGCCTCTGGGGCTTGCCCGGGGTGAAAACTCACCTCGTCGCCTTCGACACCAGCGTGGTCGACCTGACGAGCGATGT CGATGATCCCTGCGAACTGCTGATGAAGGTACAGCTCGGCGGCGGAACGGATATCCAAAGAGCGGTCGGCTATGCCGCAG ATCTGATCACCCAGCCGGAGAATGCGATCGTGATTCTGATCTCGGATTTCTACGAGGGCGCAAGCGAGGCGATGCTGCTG CAAAGAGTGGCCGAACTGACGGCACAGCGCACGCTGGTGCTCGGTTTGGCAGCGCTCGATTCAGACGCCGAGCCGGCCTA TGACCGGGAGATGGCGCGTCGTCTGGTCAGCGCCGGCGCCGAAGTAGGCGCCATGACCCCCGGCGAGCTGGCCGGCTGGC TGGCCGCCAAGATCGGACGCTAG
Upstream 100 bases:
>100_bases CACGCACCAAGACCAGCGAGCGCAAGTTCGACGAGCTTGATGCGGTGACCGTCAGCGAATTGCTGCGCGGCCTGGCGCTG TTGGCCGAGACGGCTGTGAA
Downstream 100 bases:
>100_bases GAATGGCACGCGCCGACCTCACCGCATTGACCGATGACGGCCTGACCCAGCTTTCCAATGCCGGGCTGGTCAAGCGTGCG CAGCGAGAGCTTGCAAACGG
Product: von Willebrand factor type A (vWA) domain-containing protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 380; Mature: 379
Protein sequence:
>380_residues MSQAAALDPLTRWRLILGEASDAACSAAGCTMSGDAMAMDAALDWLYGRDDEDGARNISRQGGRGPSALTTPQWINDIHR LFPKETIERLERDAIEHYAIDDIVTNPDVLSRAEPNETLLKAVLRTKHLMSPDILVMARKLVQEVVRQLMEKLSREMAVA FSGVVDRRRHSRFKIASDLDFRRVLKDNLKHYNAESRQLTVERLHFFARNRRHMKQWQVILLVDQSGSMLDSVIHSAVTA ACLWGLPGVKTHLVAFDTSVVDLTSDVDDPCELLMKVQLGGGTDIQRAVGYAADLITQPENAIVILISDFYEGASEAMLL QRVAELTAQRTLVLGLAALDSDAEPAYDREMARRLVSAGAEVGAMTPGELAGWLAAKIGR
Sequences:
>Translated_380_residues MSQAAALDPLTRWRLILGEASDAACSAAGCTMSGDAMAMDAALDWLYGRDDEDGARNISRQGGRGPSALTTPQWINDIHR LFPKETIERLERDAIEHYAIDDIVTNPDVLSRAEPNETLLKAVLRTKHLMSPDILVMARKLVQEVVRQLMEKLSREMAVA FSGVVDRRRHSRFKIASDLDFRRVLKDNLKHYNAESRQLTVERLHFFARNRRHMKQWQVILLVDQSGSMLDSVIHSAVTA ACLWGLPGVKTHLVAFDTSVVDLTSDVDDPCELLMKVQLGGGTDIQRAVGYAADLITQPENAIVILISDFYEGASEAMLL QRVAELTAQRTLVLGLAALDSDAEPAYDREMARRLVSAGAEVGAMTPGELAGWLAAKIGR >Mature_379_residues SQAAALDPLTRWRLILGEASDAACSAAGCTMSGDAMAMDAALDWLYGRDDEDGARNISRQGGRGPSALTTPQWINDIHRL FPKETIERLERDAIEHYAIDDIVTNPDVLSRAEPNETLLKAVLRTKHLMSPDILVMARKLVQEVVRQLMEKLSREMAVAF SGVVDRRRHSRFKIASDLDFRRVLKDNLKHYNAESRQLTVERLHFFARNRRHMKQWQVILLVDQSGSMLDSVIHSAVTAA CLWGLPGVKTHLVAFDTSVVDLTSDVDDPCELLMKVQLGGGTDIQRAVGYAADLITQPENAIVILISDFYEGASEAMLLQ RVAELTAQRTLVLGLAALDSDAEPAYDREMARRLVSAGAEVGAMTPGELAGWLAAKIGR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1788440, Length=369, Percent_Identity=56.3685636856369, Blast_Score=425, Evalue=1e-120,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008912 - InterPro: IPR002035 [H]
Pfam domain/function: PF05762 VWA_CoxE [H]
EC number: NA
Molecular weight: Translated: 41973; Mature: 41841
Theoretical pI: Translated: 5.66; Mature: 5.66
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSQAAALDPLTRWRLILGEASDAACSAAGCTMSGDAMAMDAALDWLYGRDDEDGARNISR CCCCHHCCHHHHHHHHHCCCCCHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHH QGGRGPSALTTPQWINDIHRLFPKETIERLERDAIEHYAIDDIVTNPDVLSRAEPNETLL CCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCHHHHH KAVLRTKHLMSPDILVMARKLVQEVVRQLMEKLSREMAVAFSGVVDRRRHSRFKIASDLD HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCH FRRVLKDNLKHYNAESRQLTVERLHFFARNRRHMKQWQVILLVDQSGSMLDSVIHSAVTA HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCHHHHHHHHHHHHH ACLWGLPGVKTHLVAFDTSVVDLTSDVDDPCELLMKVQLGGGTDIQRAVGYAADLITQPE HHHHCCCCHHHHHEEECCHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCC NAIVILISDFYEGASEAMLLQRVAELTAQRTLVLGLAALDSDAEPAYDREMARRLVSAGA CEEEEEEEHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCC EVGAMTPGELAGWLAAKIGR CCCCCCCHHHHHHHHHHCCC >Mature Secondary Structure SQAAALDPLTRWRLILGEASDAACSAAGCTMSGDAMAMDAALDWLYGRDDEDGARNISR CCCHHCCHHHHHHHHHCCCCCHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHH QGGRGPSALTTPQWINDIHRLFPKETIERLERDAIEHYAIDDIVTNPDVLSRAEPNETLL CCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCHHHHH KAVLRTKHLMSPDILVMARKLVQEVVRQLMEKLSREMAVAFSGVVDRRRHSRFKIASDLD HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCH FRRVLKDNLKHYNAESRQLTVERLHFFARNRRHMKQWQVILLVDQSGSMLDSVIHSAVTA HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCHHHHHHHHHHHHH ACLWGLPGVKTHLVAFDTSVVDLTSDVDDPCELLMKVQLGGGTDIQRAVGYAADLITQPE HHHHCCCCHHHHHEEECCHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCC NAIVILISDFYEGASEAMLLQRVAELTAQRTLVLGLAALDSDAEPAYDREMARRLVSAGA CEEEEEEEHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCC EVGAMTPGELAGWLAAKIGR CCCCCCCHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9278503 [H]