| Definition | Agrobacterium vitis S4 plasmid pAtS4e, complete sequence. |
|---|---|
| Accession | NC_011981 |
| Length | 631,775 |
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The map label for this gene is artI [H]
Identifier: 222102794
GI number: 222102794
Start: 457157
End: 457975
Strand: Reverse
Name: artI [H]
Synonym: Avi_7508
Alternate gene names: 222102794
Gene position: 457975-457157 (Counterclockwise)
Preceding gene: 222102795
Following gene: 222102793
Centisome position: 72.49
GC content: 52.87
Gene sequence:
>819_bases ATGTCCATCACCAAGATCATCCAATCCACTCTGGCATCCACCTTGCTTCTGATTGCCGCCACCAGTGCAGCCTATGCCGA AGAAGGCGTGTTGCGCATTGGCACCGAAGGGGACGCACCTCTGTTCAGCATGGCTGATGCAAACGGCAACGTCACCGGCT TTGATGCCGACATTGCCAATGGCATTTGTGCCGAACTGAAGGTCAAGTGCAAATTCGTTGTTCAGGCGTTCAGTTCTCTC ATTCCATCAATGGACAGTGACCGCTTTGACGTGATCATTTCCGGTCTCGGCATTACGGAAGAACGCGCAAAGAAAATCGA CTATTCCATTCCCTATGCAACCACACCGCTTTACTTTGTCGTTCCCAAAAGCTCACCTCTTGCCGGGTTGAAGAGCCTTA CCGAGATTGAAAAGTCATTGACCGGCAAGAGTGTTGGCGTTGTAACCGGCACAACTTACGCAAAATTCATCGAAAAGCGG ATTCCCGGCGCTGATCTAAAGACCTATGATGCGACCACCCAGCAAACTGCCGATCTGGCCAGTGGCCGCCTTGATGCCGC CTTCGGCGACTCCCCAACCTGGATGGACTTTCTAGCCAGCGCCGACGGTGCCAATTTTACCAAGATCGATGTCAAGATCA TGTCCATGGACGATCCTGATGTTCTCGGTCACGGCATGGGCGTTGGCATGCGCAAGGGCAATAGCGCGTTGAAAGCCAAG GTTGACGCTGCCCTGTGCAAGATGGTGACAGACGGCAAGGTCAAGGACGCCTCGATGAATTGGTTCAAGGACGATTATAC CATCCCCTGCAAGAAGTGA
Upstream 100 bases:
>100_bases GCAACCCCGCATCCGGGGCGGTGGAGCGGTTTCTATCCAGCGTCATGCCGGCCGCCGCTTAAGCGGGGTCGTTCCCACAA CAATAAAAGGGGTAACAGAT
Downstream 100 bases:
>100_bases TCTCTCTTTTGACACGGCACATTCTGCGCAAAATCAGGATGTGCCGTCGGGGTGGTATGCATGTTGAATGATATTTGGGA GTTGCTGATTGGCAAAGGGT
Product: ABC transporter substrate binding protein (amino acid)
Products: ADP; phosphate; L-arginine [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 272; Mature: 271
Protein sequence:
>272_residues MSITKIIQSTLASTLLLIAATSAAYAEEGVLRIGTEGDAPLFSMADANGNVTGFDADIANGICAELKVKCKFVVQAFSSL IPSMDSDRFDVIISGLGITEERAKKIDYSIPYATTPLYFVVPKSSPLAGLKSLTEIEKSLTGKSVGVVTGTTYAKFIEKR IPGADLKTYDATTQQTADLASGRLDAAFGDSPTWMDFLASADGANFTKIDVKIMSMDDPDVLGHGMGVGMRKGNSALKAK VDAALCKMVTDGKVKDASMNWFKDDYTIPCKK
Sequences:
>Translated_272_residues MSITKIIQSTLASTLLLIAATSAAYAEEGVLRIGTEGDAPLFSMADANGNVTGFDADIANGICAELKVKCKFVVQAFSSL IPSMDSDRFDVIISGLGITEERAKKIDYSIPYATTPLYFVVPKSSPLAGLKSLTEIEKSLTGKSVGVVTGTTYAKFIEKR IPGADLKTYDATTQQTADLASGRLDAAFGDSPTWMDFLASADGANFTKIDVKIMSMDDPDVLGHGMGVGMRKGNSALKAK VDAALCKMVTDGKVKDASMNWFKDDYTIPCKK >Mature_271_residues SITKIIQSTLASTLLLIAATSAAYAEEGVLRIGTEGDAPLFSMADANGNVTGFDADIANGICAELKVKCKFVVQAFSSLI PSMDSDRFDVIISGLGITEERAKKIDYSIPYATTPLYFVVPKSSPLAGLKSLTEIEKSLTGKSVGVVTGTTYAKFIEKRI PGADLKTYDATTQQTADLASGRLDAAFGDSPTWMDFLASADGANFTKIDVKIMSMDDPDVLGHGMGVGMRKGNSALKAKV DAALCKMVTDGKVKDASMNWFKDDYTIPCKK
Specific function: Part of the ABC transporter complex ArtPIQMJ involved in arginine transport [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Periplasm [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial solute-binding protein 3 family [H]
Homologues:
Organism=Escherichia coli, GI1787088, Length=247, Percent_Identity=34.0080971659919, Blast_Score=147, Evalue=7e-37, Organism=Escherichia coli, GI1787085, Length=247, Percent_Identity=31.5789473684211, Blast_Score=140, Evalue=8e-35, Organism=Escherichia coli, GI1788649, Length=261, Percent_Identity=34.8659003831418, Blast_Score=124, Evalue=9e-30, Organism=Escherichia coli, GI1788228, Length=247, Percent_Identity=30.7692307692308, Blast_Score=122, Evalue=2e-29, Organism=Escherichia coli, GI1788648, Length=235, Percent_Identity=31.063829787234, Blast_Score=110, Evalue=7e-26, Organism=Escherichia coli, GI1787031, Length=257, Percent_Identity=26.4591439688716, Blast_Score=87, Evalue=9e-19,
Paralogues:
None
Copy number: 340 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 160 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005768 - InterPro: IPR001638 - InterPro: IPR018313 [H]
Pfam domain/function: PF00497 SBP_bac_3 [H]
EC number: NA
Molecular weight: Translated: 28929; Mature: 28798
Theoretical pI: Translated: 5.15; Mature: 5.15
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSITKIIQSTLASTLLLIAATSAAYAEEGVLRIGTEGDAPLFSMADANGNVTGFDADIAN CCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCEEEEECCCCCEEEECHHHHC GICAELKVKCKFVVQAFSSLIPSMDSDRFDVIISGLGITEERAKKIDYSIPYATTPLYFV CCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHCCCCCCCCCCCEEEE VPKSSPLAGLKSLTEIEKSLTGKSVGVVTGTTYAKFIEKRIPGADLKTYDATTQQTADLA EECCCCHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHCCCCCCEECCCCHHHHHHHH SGRLDAAFGDSPTWMDFLASADGANFTKIDVKIMSMDDPDVLGHGMGVGMRKGNSALKAK CCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEEEEECCCCHHHHCCCCCCCCCCCHHHHHH VDAALCKMVTDGKVKDASMNWFKDDYTIPCKK HHHHHHHHHCCCCEECCCCCEECCCEECCCCC >Mature Secondary Structure SITKIIQSTLASTLLLIAATSAAYAEEGVLRIGTEGDAPLFSMADANGNVTGFDADIAN CHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCEEEEECCCCCEEEECHHHHC GICAELKVKCKFVVQAFSSLIPSMDSDRFDVIISGLGITEERAKKIDYSIPYATTPLYFV CCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHCCCCCCCCCCCEEEE VPKSSPLAGLKSLTEIEKSLTGKSVGVVTGTTYAKFIEKRIPGADLKTYDATTQQTADLA EECCCCHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHCCCCCCEECCCCHHHHHHHH SGRLDAAFGDSPTWMDFLASADGANFTKIDVKIMSMDDPDVLGHGMGVGMRKGNSALKAK CCCCCCCCCCCCHHHHHHHCCCCCCEEEEEEEEEECCCCHHHHCCCCCCCCCCCHHHHHH VDAALCKMVTDGKVKDASMNWFKDDYTIPCKK HHHHHHHHHCCCCEECCCCCEECCCEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; L-arginine [Periplasm]; H2O [C]
Specific reaction: ATP + L-arginine [Periplasm] + H2O = ADP + phosphate + L-arginine [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8501075; 8905232; 9278503; 9298646; 9600841 [H]