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The map label for this gene is ykgD [C]

Identifier: 222102708

GI number: 222102708

Start: 358001

End: 358990

Strand: Reverse

Name: ykgD [C]

Synonym: Avi_7382

Alternate gene names: 222102708

Gene position: 358990-358001 (Counterclockwise)

Preceding gene: 222102713

Following gene: 222102707

Centisome position: 56.82

GC content: 58.28

Gene sequence:

>990_bases
ATGTCTGATCATTCGTCTCAACGGTTGTCGCCGTCAAATATCCCAATGGATGCGCTAAGCGAAGTTCTACAGGACTTTCG
CTTGAGTGGGGTCAATTATGGGCGCTGCGAACTGCGGCATCCGTGGAGCATCGCCTTGCCGCACCAGCAGCTGCTTCGAT
TCCACTTTGTCAGCCAAGGTCCATGCTGGATTCATACCGAAGCCCAAGGGTGGCAGGAATTGAATGATGGGGATCTGGTG
CTACTGCCGCAAGGTATCGCACATCGGTTGGCAAGCGCGCCGGATGTTGAAGGCGACTCGCTCAAAAGCTGTCAGATAAA
AAGGTTGAGCAACAAGGTTTGCGAGTTGGTGCGGGAAGGAACGGGGGCGACCAGCACTCTTTTCTGCGGTTCCATGGCTT
TGAGCGCATATGCCCTTGATCCTTTGATCGCCTTGATGCCGCCAATCATCAAGGGCTGCGATGTCGCTGGCAATGACCCG
GTTATTGGCCCCCTGCTGGCGGCTATGACGGCAGAGGCTTCGCAGCCTCAGATGGGCAGCGCGACGATCCTGTCGCGTAT
GGCTGACTTGCTCGTTGCGCGGCTTATCCGCTGTTGGGTCAATTGCAGCGGAGCCGCAACCACCGGCTGGCTCGCCGCCA
TCCGCGACCCTCATCTTGGTCGTGTATTGGCCGCCATGCACCGCGATCCGGGCCATAACTGGACGCTTGAAAGCCTTGCC
GGTGTGGCGGGCCAATCGCGCTCGATTTTTGCCGAACGCTTCAGCGCTATTTTAGGAGAAGGCGCGGCACGCTATCTCGC
CCGCCTGCGCATGCAGCTTGCCCGTGAGTTGTTGGGGCAAGGTGGCATGTCGGTTGCCGAGGTTGCATCTCGCCTGGGCT
ATGAATCTGAGGCGTCTTTCGCCCGCGCTTTCAAACGGATTACCACGCTCTCCCCGGGCGTTGTGCGCCGCACAGTTTCC
GGACGAACGGACATGGTTTTCGGATTTTAA

Upstream 100 bases:

>100_bases
GGCTGACTGGAATGAGAGGGGGTGCTATGGGCGGGGATCACGCTCGAATTCATAAAACTTCGTACTTGCGCGCCAGACGT
TTGGTGCCTAAAATTGGATA

Downstream 100 bases:

>100_bases
GCTACATATAATCCCAAATCTTTCGTCTATGAAGTGCTTCTGGATTCAGGAGATACGTCAATGACGGACAGAACATCACA
ATTTAACAGCGCAGCTATAG

Product: transcriptional regulator AraC family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 329; Mature: 328

Protein sequence:

>329_residues
MSDHSSQRLSPSNIPMDALSEVLQDFRLSGVNYGRCELRHPWSIALPHQQLLRFHFVSQGPCWIHTEAQGWQELNDGDLV
LLPQGIAHRLASAPDVEGDSLKSCQIKRLSNKVCELVREGTGATSTLFCGSMALSAYALDPLIALMPPIIKGCDVAGNDP
VIGPLLAAMTAEASQPQMGSATILSRMADLLVARLIRCWVNCSGAATTGWLAAIRDPHLGRVLAAMHRDPGHNWTLESLA
GVAGQSRSIFAERFSAILGEGAARYLARLRMQLARELLGQGGMSVAEVASRLGYESEASFARAFKRITTLSPGVVRRTVS
GRTDMVFGF

Sequences:

>Translated_329_residues
MSDHSSQRLSPSNIPMDALSEVLQDFRLSGVNYGRCELRHPWSIALPHQQLLRFHFVSQGPCWIHTEAQGWQELNDGDLV
LLPQGIAHRLASAPDVEGDSLKSCQIKRLSNKVCELVREGTGATSTLFCGSMALSAYALDPLIALMPPIIKGCDVAGNDP
VIGPLLAAMTAEASQPQMGSATILSRMADLLVARLIRCWVNCSGAATTGWLAAIRDPHLGRVLAAMHRDPGHNWTLESLA
GVAGQSRSIFAERFSAILGEGAARYLARLRMQLARELLGQGGMSVAEVASRLGYESEASFARAFKRITTLSPGVVRRTVS
GRTDMVFGF
>Mature_328_residues
SDHSSQRLSPSNIPMDALSEVLQDFRLSGVNYGRCELRHPWSIALPHQQLLRFHFVSQGPCWIHTEAQGWQELNDGDLVL
LPQGIAHRLASAPDVEGDSLKSCQIKRLSNKVCELVREGTGATSTLFCGSMALSAYALDPLIALMPPIIKGCDVAGNDPV
IGPLLAAMTAEASQPQMGSATILSRMADLLVARLIRCWVNCSGAATTGWLAAIRDPHLGRVLAAMHRDPGHNWTLESLAG
VAGQSRSIFAERFSAILGEGAARYLARLRMQLARELLGQGGMSVAEVASRLGYESEASFARAFKRITTLSPGVVRRTVSG
RTDMVFGF

Specific function: Unknown

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786496, Length=313, Percent_Identity=27.7955271565495, Blast_Score=96, Evalue=4e-21,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 35548; Mature: 35417

Theoretical pI: Translated: 8.03; Mature: 8.03

Prosite motif: PS01124 HTH_ARAC_FAMILY_2 ; PS00107 PROTEIN_KINASE_ATP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDHSSQRLSPSNIPMDALSEVLQDFRLSGVNYGRCELRHPWSIALPHQQLLRFHFVSQG
CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCEEECCHHHHHHHHHCCCC
PCWIHTEAQGWQELNDGDLVLLPQGIAHRLASAPDVEGDSLKSCQIKRLSNKVCELVREG
CEEEEECCCCHHCCCCCCEEEECHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
TGATSTLFCGSMALSAYALDPLIALMPPIIKGCDVAGNDPVIGPLLAAMTAEASQPQMGS
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCH
ATILSRMADLLVARLIRCWVNCSGAATTGWLAAIRDPHLGRVLAAMHRDPGHNWTLESLA
HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHCCCCCCCCHHHHH
GVAGQSRSIFAERFSAILGEGAARYLARLRMQLARELLGQGGMSVAEVASRLGYESEASF
HHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHH
ARAFKRITTLSPGVVRRTVSGRTDMVFGF
HHHHHHHHHCCCHHHHHHHCCCCCEEECC
>Mature Secondary Structure 
SDHSSQRLSPSNIPMDALSEVLQDFRLSGVNYGRCELRHPWSIALPHQQLLRFHFVSQG
CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCEEECCHHHHHHHHHCCCC
PCWIHTEAQGWQELNDGDLVLLPQGIAHRLASAPDVEGDSLKSCQIKRLSNKVCELVREG
CEEEEECCCCHHCCCCCCEEEECHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
TGATSTLFCGSMALSAYALDPLIALMPPIIKGCDVAGNDPVIGPLLAAMTAEASQPQMGS
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCH
ATILSRMADLLVARLIRCWVNCSGAATTGWLAAIRDPHLGRVLAAMHRDPGHNWTLESLA
HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHCCCCCCCCHHHHH
GVAGQSRSIFAERFSAILGEGAARYLARLRMQLARELLGQGGMSVAEVASRLGYESEASF
HHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHH
ARAFKRITTLSPGVVRRTVSGRTDMVFGF
HHHHHHHHHCCCHHHHHHHCCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]