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The map label for this gene is rbsC [H]

Identifier: 222102694

GI number: 222102694

Start: 342479

End: 343456

Strand: Direct

Name: rbsC [H]

Synonym: Avi_7366

Alternate gene names: 222102694

Gene position: 342479-343456 (Clockwise)

Preceding gene: 222102693

Following gene: 222102695

Centisome position: 54.21

GC content: 60.74

Gene sequence:

>978_bases
ATGACCGCCTCTTCATCCGCCGCCAGCCAATCGGTCCCGACCTTTCGCCGGTTTTCCGTCTCGTTGCGTGATGCCGGAAC
GCTGATCGGCCTCATCGTCATCATGGCGGTATTTGCAGCGCTCGTTCCCGGCTTCCTGTCGGAGCGCAATCTGACCAATA
TTCTCCAGCAATCCAGCATCAATGCCTGCCTGGCGCTGGGCATGACGCTGGTGATCATTTCAGGCGGCATCGATCTATCG
GTCGGGCCGACCGCTGCCATTGCCGCCGTGATGACCGCGACGCTGCTGCTGGGTGGAACGCCCATCCCTTTGGCGATCCT
CGCCGGGCTTGGTGTCGGCGCGGTATGCGGCTTTATTAATGGCGTGCTTGTCGCCTATATCGGCCTGCAACCCTTCATCG
TGACGCTGGGGACACTGAGCACCTACCGAGCCATCGCGCTGATCTTCACCGGTGGCAATCCGGTGCTGGGCATTCCGCCC
GGCTTTCGGGCGCTATTCAATGGAACCCTGATCGGCCTGCCAATCCCGGTGCTGATCGTTGCCGGTGTTTCGGTCGCCGC
CTGGGTGCTGCTCAAGAAGACGCCGATCGGTGAATACCTGATGGCGGTTGGCGGCAATGAGGAAGCGGCTTACGTGGCAG
GCGTTCCAATCGCCCGTACCAAGATCACCGCCTATGTGATTTCCGGCGGGCTCGCCGCACTTGCCTCCCTTATCCTGATT
GGCCGTCTTGGCGCGGCCGAGCCCATTCTCGGCAATCTCTGGGAGCTGGATGCAATCGCAGCAGCGGCGATTGGCGGTGC
ATCGCTGATGGGCGGCAAGGGCAGTATTGTCGGCACCATTCTCGGCGCCATTATCCTGGGTGCCATGCGCAATGGTTTGA
CGCTGATGAATGTCCAGGCCTTCTATCAACTGCTCGCCACCGGCCTTATAATCCTCGTCGCAATGATGATTGATCGCGCG
ACAAGGGGACGGGAATGA

Upstream 100 bases:

>100_bases
CAGCTGACGGAAAGCGCCATTCTCGCCCACGCCATTCCAGGAGCGAGTGCCGGTGCTACCGCCATCGCACATCCTGCATA
AACAGAGAGGATCTTTCTCC

Downstream 100 bases:

>100_bases
ACGCTGATGGCTTTGACATGAAGGCGGTAGGGCCGCGCATTCGCATGATGATGCCAATGCTGACCCCGCTGGAAGCAAAG
GTCGTGGATACGGTTTTTGG

Product: ABC transporter membrane spanning protein (ribose)

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 325; Mature: 324

Protein sequence:

>325_residues
MTASSSAASQSVPTFRRFSVSLRDAGTLIGLIVIMAVFAALVPGFLSERNLTNILQQSSINACLALGMTLVIISGGIDLS
VGPTAAIAAVMTATLLLGGTPIPLAILAGLGVGAVCGFINGVLVAYIGLQPFIVTLGTLSTYRAIALIFTGGNPVLGIPP
GFRALFNGTLIGLPIPVLIVAGVSVAAWVLLKKTPIGEYLMAVGGNEEAAYVAGVPIARTKITAYVISGGLAALASLILI
GRLGAAEPILGNLWELDAIAAAAIGGASLMGGKGSIVGTILGAIILGAMRNGLTLMNVQAFYQLLATGLIILVAMMIDRA
TRGRE

Sequences:

>Translated_325_residues
MTASSSAASQSVPTFRRFSVSLRDAGTLIGLIVIMAVFAALVPGFLSERNLTNILQQSSINACLALGMTLVIISGGIDLS
VGPTAAIAAVMTATLLLGGTPIPLAILAGLGVGAVCGFINGVLVAYIGLQPFIVTLGTLSTYRAIALIFTGGNPVLGIPP
GFRALFNGTLIGLPIPVLIVAGVSVAAWVLLKKTPIGEYLMAVGGNEEAAYVAGVPIARTKITAYVISGGLAALASLILI
GRLGAAEPILGNLWELDAIAAAAIGGASLMGGKGSIVGTILGAIILGAMRNGLTLMNVQAFYQLLATGLIILVAMMIDRA
TRGRE
>Mature_324_residues
TASSSAASQSVPTFRRFSVSLRDAGTLIGLIVIMAVFAALVPGFLSERNLTNILQQSSINACLALGMTLVIISGGIDLSV
GPTAAIAAVMTATLLLGGTPIPLAILAGLGVGAVCGFINGVLVAYIGLQPFIVTLGTLSTYRAIALIFTGGNPVLGIPPG
FRALFNGTLIGLPIPVLIVAGVSVAAWVLLKKTPIGEYLMAVGGNEEAAYVAGVPIARTKITAYVISGGLAALASLILIG
RLGAAEPILGNLWELDAIAAAAIGGASLMGGKGSIVGTILGAIILGAMRNGLTLMNVQAFYQLLATGLIILVAMMIDRAT
RGRE

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=322, Percent_Identity=41.304347826087, Blast_Score=209, Evalue=2e-55,
Organism=Escherichia coli, GI1790524, Length=320, Percent_Identity=38.75, Blast_Score=203, Evalue=1e-53,
Organism=Escherichia coli, GI1788896, Length=333, Percent_Identity=35.1351351351351, Blast_Score=152, Evalue=4e-38,
Organism=Escherichia coli, GI145693152, Length=322, Percent_Identity=34.7826086956522, Blast_Score=152, Evalue=4e-38,
Organism=Escherichia coli, GI145693214, Length=244, Percent_Identity=40.5737704918033, Blast_Score=137, Evalue=1e-33,
Organism=Escherichia coli, GI1788471, Length=329, Percent_Identity=36.7781155015198, Blast_Score=134, Evalue=1e-32,
Organism=Escherichia coli, GI1787793, Length=286, Percent_Identity=36.3636363636364, Blast_Score=127, Evalue=1e-30,
Organism=Escherichia coli, GI1787794, Length=277, Percent_Identity=34.2960288808664, Blast_Score=121, Evalue=6e-29,
Organism=Escherichia coli, GI1789992, Length=133, Percent_Identity=45.8646616541353, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI87082395, Length=296, Percent_Identity=30.4054054054054, Blast_Score=102, Evalue=4e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 32835; Mature: 32704

Theoretical pI: Translated: 9.74; Mature: 9.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTASSSAASQSVPTFRRFSVSLRDAGTLIGLIVIMAVFAALVPGFLSERNLTNILQQSSI
CCCCCCCCCCCCCCHHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
NACLALGMTLVIISGGIDLSVGPTAAIAAVMTATLLLGGTPIPLAILAGLGVGAVCGFIN
HHHHHHHHHHEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHH
GVLVAYIGLQPFIVTLGTLSTYRAIALIFTGGNPVLGIPPGFRALFNGTLIGLPIPVLIV
HHHHHHHHHHHHHHHHHHHHHHEEEEEEEECCCEEEECCCCHHHHHCCCEECCCHHHHHH
AGVSVAAWVLLKKTPIGEYLMAVGGNEEAAYVAGVPIARTKITAYVISGGLAALASLILI
HHHHHHHHHHHHCCCHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHCCHHHHHHHHHH
GRLGAAEPILGNLWELDAIAAAAIGGASLMGGKGSIVGTILGAIILGAMRNGLTLMNVQA
HCCCCCCCHHCCHHHHHHHHHHHHCCHHCCCCCCHHHHHHHHHHHHHHHHCCCEEEEHHH
FYQLLATGLIILVAMMIDRATRGRE
HHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
TASSSAASQSVPTFRRFSVSLRDAGTLIGLIVIMAVFAALVPGFLSERNLTNILQQSSI
CCCCCCCCCCCCCHHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
NACLALGMTLVIISGGIDLSVGPTAAIAAVMTATLLLGGTPIPLAILAGLGVGAVCGFIN
HHHHHHHHHHEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHH
GVLVAYIGLQPFIVTLGTLSTYRAIALIFTGGNPVLGIPPGFRALFNGTLIGLPIPVLIV
HHHHHHHHHHHHHHHHHHHHHHEEEEEEEECCCEEEECCCCHHHHHCCCEECCCHHHHHH
AGVSVAAWVLLKKTPIGEYLMAVGGNEEAAYVAGVPIARTKITAYVISGGLAALASLILI
HHHHHHHHHHHHCCCHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHCCHHHHHHHHHH
GRLGAAEPILGNLWELDAIAAAAIGGASLMGGKGSIVGTILGAIILGAMRNGLTLMNVQA
HCCCCCCCHHCCHHHHHHHHHHHHCCHHCCCCCCHHHHHHHHHHHHHHHHCCCEEEEHHH
FYQLLATGLIILVAMMIDRATRGRE
HHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]