Definition Agrobacterium vitis S4 plasmid pAtS4e, complete sequence.
Accession NC_011981
Length 631,775

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The map label for this gene is 222102680

Identifier: 222102680

GI number: 222102680

Start: 327547

End: 329352

Strand: Direct

Name: 222102680

Synonym: Avi_7349

Alternate gene names: NA

Gene position: 327547-329352 (Clockwise)

Preceding gene: 222102671

Following gene: 222102681

Centisome position: 51.85

GC content: 58.69

Gene sequence:

>1806_bases
ATGTTCAGCAAGCATATTGGCAGCTTGCCGCCTCATCTTGCCGATTTCCAACCGGCCGCAGCTGCCGACGTCCATGCGTT
GCTGCAACGACTGGGCGTCGAACATCTCACCGCCCTAAAGGCCGCAGGCCGTACGGCGCTGGAGGCCGAATGGCCGCAGA
TCTTTGCCTCTCGTTACCGTGACTATACCCAGACAGGAAATCGTTCGCGCTTCGAAGACCTGTATTTCCGTCGCCGCCTG
ATGCTGAACGATCTGGTTCTGGCGGAATGCGCCAAGGACACAGGTGAGGGCGGAGACGACTTCATCGACGCCATTATCGA
TGGCGTCATTCTGATCTGTGAGGAAAGCGGGTGGCAATTGCCAGCGCATAACGCCTATGGACGCGGCGGTCCGCGCCAGC
CCTTGCCGGATCCTGATGACCCTGTGGTCGATCTCTTCGCGGCGGAAACGGCGGCGAACCTGGCAACCCTGGTTTGGCTG
CTAAGGCCTGCCCTTGCCCAACGCGATCCGCGCCTGCCTGCCCGCATAGAACAGGAGATCCACCGCCGTATTATCACCCC
TTATCTTACCCGGCATTTCTGGTGGATGGGGCAGGGAAACGAGAGGATGAACAACTGGACTGCCTGGATCACCCAGAACG
TCCTGATCGCCACGTTTTCCCTGCCCACGAGCCAGGAGATTCGCCGTGCAGTGCTGGTCAAAGCGCTGGGCAGTCTCGAT
GCCTTTCTCAAGGACTATGCCGAGGACGGCGCCTGCGAGGAAGGCGTGCTCTACTATCGCCATGCCGCTCTCTGTCTGTT
TGGTGCTATGACCGTGCTGGATCAGGTCGTGCCGGACCTGTGCCGTCCGCTTTGGCAGGCAGCCAAGATCCGCAATATGG
CGGAATACATCCTCAATATGCATGTGTCTGGACGGCATTATTTCAATTTTGCCGATTCATCAGCAGTTCTGGAGCCCTGT
AGCATCAGAGAATATCTGTTCGGCAAAGCGGTTGGCTCGAAGGCGCTGATGGATTTTGCCGCTGCCGATCTTCAACAATC
CGCAGATCCGCTGCTGTCGAAAGAGTGGAACCTTTGGCACCGGTTGATGGCAGCCACACGCTTGCCGGACGTTAAGCCTG
CGCCAGCAAAGCCGGCGGCAAAAGGTGATATTTTCTACCCCGGCACCGGGCTTTTCATCGCCCGCGACAACCGTTTCGAT
CTGGCGGTGAAGGGTGGGCATAACGGCGAAAGCCATAATCATAACGATGTCGGCAGCCTGACGCTTTACAAGAACGGACA
ACCATTTCTCATCGATATCGGTGTCGAAACCTACACGGCCAAGACTTTCTCGCCGCAGCGTTACGAGATCTGGACGATGC
AATCGGCCTACCACAACCTTCCAACCTTTGCGGGCGTCATGCAGCAGGAGGGGCCGGAATGTGCCGCACGCGATGTCGAG
ACGGCTTTCGAGGTGGAGGAGGCCCGCATTTCGCTGGAGATAGCCGCAGCTTACCCGAAAGAAGCAGCGCTGTGCTCTTA
TCGCCGCAGCGTCAGGCTCATTCGCGGCAGCCATGTTGAGATTATCGACGAGCATGACGGTGACAAGCCTGCGGTCCTGT
CACTGATGACCTGCGTTGCGCCCCGCTCGCAGGCGGGGCGGCTGGTCCTGGACGGGCTCGGCGAAATTAGCGTGAGCGGT
GCGGCAGAGCCAATCATCGAGGCAATCGACATCGGCGATCCCCGGCTGCGGCAGGCTTGGCCGGAGAGAATTTTCCGTAT
TCTGCTGCCGTTTGAGACATCCCGCTTGTCGCTGACGATTACTTGA

Upstream 100 bases:

>100_bases
TCAAACAACTTCCGATAACATCAGACAAATTTACTGGAAAGGTGAAAATAGGTATGATAGCAGGGGATTGCTAGACGGTG
AGGAAGGGGAGGTGAGCATA

Downstream 100 bases:

>100_bases
GGAGGGTGAGGATGAGAGTGACACTCACTGTGGTGGATGCTGCGGGCCAAAACCTGGCGCAGAGCAGTGCAGACCACGAA
GCCTTTCTGGTCTATCGCCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 601; Mature: 601

Protein sequence:

>601_residues
MFSKHIGSLPPHLADFQPAAAADVHALLQRLGVEHLTALKAAGRTALEAEWPQIFASRYRDYTQTGNRSRFEDLYFRRRL
MLNDLVLAECAKDTGEGGDDFIDAIIDGVILICEESGWQLPAHNAYGRGGPRQPLPDPDDPVVDLFAAETAANLATLVWL
LRPALAQRDPRLPARIEQEIHRRIITPYLTRHFWWMGQGNERMNNWTAWITQNVLIATFSLPTSQEIRRAVLVKALGSLD
AFLKDYAEDGACEEGVLYYRHAALCLFGAMTVLDQVVPDLCRPLWQAAKIRNMAEYILNMHVSGRHYFNFADSSAVLEPC
SIREYLFGKAVGSKALMDFAAADLQQSADPLLSKEWNLWHRLMAATRLPDVKPAPAKPAAKGDIFYPGTGLFIARDNRFD
LAVKGGHNGESHNHNDVGSLTLYKNGQPFLIDIGVETYTAKTFSPQRYEIWTMQSAYHNLPTFAGVMQQEGPECAARDVE
TAFEVEEARISLEIAAAYPKEAALCSYRRSVRLIRGSHVEIIDEHDGDKPAVLSLMTCVAPRSQAGRLVLDGLGEISVSG
AAEPIIEAIDIGDPRLRQAWPERIFRILLPFETSRLSLTIT

Sequences:

>Translated_601_residues
MFSKHIGSLPPHLADFQPAAAADVHALLQRLGVEHLTALKAAGRTALEAEWPQIFASRYRDYTQTGNRSRFEDLYFRRRL
MLNDLVLAECAKDTGEGGDDFIDAIIDGVILICEESGWQLPAHNAYGRGGPRQPLPDPDDPVVDLFAAETAANLATLVWL
LRPALAQRDPRLPARIEQEIHRRIITPYLTRHFWWMGQGNERMNNWTAWITQNVLIATFSLPTSQEIRRAVLVKALGSLD
AFLKDYAEDGACEEGVLYYRHAALCLFGAMTVLDQVVPDLCRPLWQAAKIRNMAEYILNMHVSGRHYFNFADSSAVLEPC
SIREYLFGKAVGSKALMDFAAADLQQSADPLLSKEWNLWHRLMAATRLPDVKPAPAKPAAKGDIFYPGTGLFIARDNRFD
LAVKGGHNGESHNHNDVGSLTLYKNGQPFLIDIGVETYTAKTFSPQRYEIWTMQSAYHNLPTFAGVMQQEGPECAARDVE
TAFEVEEARISLEIAAAYPKEAALCSYRRSVRLIRGSHVEIIDEHDGDKPAVLSLMTCVAPRSQAGRLVLDGLGEISVSG
AAEPIIEAIDIGDPRLRQAWPERIFRILLPFETSRLSLTIT
>Mature_601_residues
MFSKHIGSLPPHLADFQPAAAADVHALLQRLGVEHLTALKAAGRTALEAEWPQIFASRYRDYTQTGNRSRFEDLYFRRRL
MLNDLVLAECAKDTGEGGDDFIDAIIDGVILICEESGWQLPAHNAYGRGGPRQPLPDPDDPVVDLFAAETAANLATLVWL
LRPALAQRDPRLPARIEQEIHRRIITPYLTRHFWWMGQGNERMNNWTAWITQNVLIATFSLPTSQEIRRAVLVKALGSLD
AFLKDYAEDGACEEGVLYYRHAALCLFGAMTVLDQVVPDLCRPLWQAAKIRNMAEYILNMHVSGRHYFNFADSSAVLEPC
SIREYLFGKAVGSKALMDFAAADLQQSADPLLSKEWNLWHRLMAATRLPDVKPAPAKPAAKGDIFYPGTGLFIARDNRFD
LAVKGGHNGESHNHNDVGSLTLYKNGQPFLIDIGVETYTAKTFSPQRYEIWTMQSAYHNLPTFAGVMQQEGPECAARDVE
TAFEVEEARISLEIAAAYPKEAALCSYRRSVRLIRGSHVEIIDEHDGDKPAVLSLMTCVAPRSQAGRLVLDGLGEISVSG
AAEPIIEAIDIGDPRLRQAWPERIFRILLPFETSRLSLTIT

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 67003; Mature: 67003

Theoretical pI: Translated: 5.96; Mature: 5.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFSKHIGSLPPHLADFQPAAAADVHALLQRLGVEHLTALKAAGRTALEAEWPQIFASRYR
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCHHHHHHHHHCCCCCHHHHHHHHHHHHHH
DYTQTGNRSRFEDLYFRRRLMLNDLVLAECAKDTGEGGDDFIDAIIDGVILICEESGWQL
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCEEEEECCCCCCC
PAHNAYGRGGPRQPLPDPDDPVVDLFAAETAANLATLVWLLRPALAQRDPRLPARIEQEI
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
HRRIITPYLTRHFWWMGQGNERMNNWTAWITQNVLIATFSLPTSQEIRRAVLVKALGSLD
HHHHHHHHHHHHEEEECCCCCHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHH
AFLKDYAEDGACEEGVLYYRHAALCLFGAMTVLDQVVPDLCRPLWQAAKIRNMAEYILNM
HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HVSGRHYFNFADSSAVLEPCSIREYLFGKAVGSKALMDFAAADLQQSADPLLSKEWNLWH
CCCCCEEEEECCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
RLMAATRLPDVKPAPAKPAAKGDIFYPGTGLFIARDNRFDLAVKGGHNGESHNHNDVGSL
HHHHHHCCCCCCCCCCCCCCCCCEEECCCEEEEEECCCEEEEEECCCCCCCCCCCCCCEE
TLYKNGQPFLIDIGVETYTAKTFSPQRYEIWTMQSAYHNLPTFAGVMQQEGPECAARDVE
EEEECCCEEEEEECCCEEEECCCCCCCEEEEEEHHHHHCCHHHHHHHHHCCCCHHHHHHH
TAFEVEEARISLEIAAAYPKEAALCSYRRSVRLIRGSHVEIIDEHDGDKPAVLSLMTCVA
HHHHHHHHHEEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHC
PRSQAGRLVLDGLGEISVSGAAEPIIEAIDIGDPRLRQAWPERIFRILLPFETSRLSLTI
CCCCCCCEEECCCCCEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEE
T
C
>Mature Secondary Structure
MFSKHIGSLPPHLADFQPAAAADVHALLQRLGVEHLTALKAAGRTALEAEWPQIFASRYR
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCHHHHHHHHHCCCCCHHHHHHHHHHHHHH
DYTQTGNRSRFEDLYFRRRLMLNDLVLAECAKDTGEGGDDFIDAIIDGVILICEESGWQL
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCEEEEECCCCCCC
PAHNAYGRGGPRQPLPDPDDPVVDLFAAETAANLATLVWLLRPALAQRDPRLPARIEQEI
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
HRRIITPYLTRHFWWMGQGNERMNNWTAWITQNVLIATFSLPTSQEIRRAVLVKALGSLD
HHHHHHHHHHHHEEEECCCCCHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHH
AFLKDYAEDGACEEGVLYYRHAALCLFGAMTVLDQVVPDLCRPLWQAAKIRNMAEYILNM
HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HVSGRHYFNFADSSAVLEPCSIREYLFGKAVGSKALMDFAAADLQQSADPLLSKEWNLWH
CCCCCEEEEECCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
RLMAATRLPDVKPAPAKPAAKGDIFYPGTGLFIARDNRFDLAVKGGHNGESHNHNDVGSL
HHHHHHCCCCCCCCCCCCCCCCCEEECCCEEEEEECCCEEEEEECCCCCCCCCCCCCCEE
TLYKNGQPFLIDIGVETYTAKTFSPQRYEIWTMQSAYHNLPTFAGVMQQEGPECAARDVE
EEEECCCEEEEEECCCEEEECCCCCCCEEEEEEHHHHHCCHHHHHHHHHCCCCHHHHHHH
TAFEVEEARISLEIAAAYPKEAALCSYRRSVRLIRGSHVEIIDEHDGDKPAVLSLMTCVA
HHHHHHHHHEEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHC
PRSQAGRLVLDGLGEISVSGAAEPIIEAIDIGDPRLRQAWPERIFRILLPFETSRLSLTI
CCCCCCCEEECCCCCEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEE
T
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA