| Definition | Agrobacterium vitis S4 plasmid pAtS4e, complete sequence. |
|---|---|
| Accession | NC_011981 |
| Length | 631,775 |
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The map label for this gene is 222102680
Identifier: 222102680
GI number: 222102680
Start: 327547
End: 329352
Strand: Direct
Name: 222102680
Synonym: Avi_7349
Alternate gene names: NA
Gene position: 327547-329352 (Clockwise)
Preceding gene: 222102671
Following gene: 222102681
Centisome position: 51.85
GC content: 58.69
Gene sequence:
>1806_bases ATGTTCAGCAAGCATATTGGCAGCTTGCCGCCTCATCTTGCCGATTTCCAACCGGCCGCAGCTGCCGACGTCCATGCGTT GCTGCAACGACTGGGCGTCGAACATCTCACCGCCCTAAAGGCCGCAGGCCGTACGGCGCTGGAGGCCGAATGGCCGCAGA TCTTTGCCTCTCGTTACCGTGACTATACCCAGACAGGAAATCGTTCGCGCTTCGAAGACCTGTATTTCCGTCGCCGCCTG ATGCTGAACGATCTGGTTCTGGCGGAATGCGCCAAGGACACAGGTGAGGGCGGAGACGACTTCATCGACGCCATTATCGA TGGCGTCATTCTGATCTGTGAGGAAAGCGGGTGGCAATTGCCAGCGCATAACGCCTATGGACGCGGCGGTCCGCGCCAGC CCTTGCCGGATCCTGATGACCCTGTGGTCGATCTCTTCGCGGCGGAAACGGCGGCGAACCTGGCAACCCTGGTTTGGCTG CTAAGGCCTGCCCTTGCCCAACGCGATCCGCGCCTGCCTGCCCGCATAGAACAGGAGATCCACCGCCGTATTATCACCCC TTATCTTACCCGGCATTTCTGGTGGATGGGGCAGGGAAACGAGAGGATGAACAACTGGACTGCCTGGATCACCCAGAACG TCCTGATCGCCACGTTTTCCCTGCCCACGAGCCAGGAGATTCGCCGTGCAGTGCTGGTCAAAGCGCTGGGCAGTCTCGAT GCCTTTCTCAAGGACTATGCCGAGGACGGCGCCTGCGAGGAAGGCGTGCTCTACTATCGCCATGCCGCTCTCTGTCTGTT TGGTGCTATGACCGTGCTGGATCAGGTCGTGCCGGACCTGTGCCGTCCGCTTTGGCAGGCAGCCAAGATCCGCAATATGG CGGAATACATCCTCAATATGCATGTGTCTGGACGGCATTATTTCAATTTTGCCGATTCATCAGCAGTTCTGGAGCCCTGT AGCATCAGAGAATATCTGTTCGGCAAAGCGGTTGGCTCGAAGGCGCTGATGGATTTTGCCGCTGCCGATCTTCAACAATC CGCAGATCCGCTGCTGTCGAAAGAGTGGAACCTTTGGCACCGGTTGATGGCAGCCACACGCTTGCCGGACGTTAAGCCTG CGCCAGCAAAGCCGGCGGCAAAAGGTGATATTTTCTACCCCGGCACCGGGCTTTTCATCGCCCGCGACAACCGTTTCGAT CTGGCGGTGAAGGGTGGGCATAACGGCGAAAGCCATAATCATAACGATGTCGGCAGCCTGACGCTTTACAAGAACGGACA ACCATTTCTCATCGATATCGGTGTCGAAACCTACACGGCCAAGACTTTCTCGCCGCAGCGTTACGAGATCTGGACGATGC AATCGGCCTACCACAACCTTCCAACCTTTGCGGGCGTCATGCAGCAGGAGGGGCCGGAATGTGCCGCACGCGATGTCGAG ACGGCTTTCGAGGTGGAGGAGGCCCGCATTTCGCTGGAGATAGCCGCAGCTTACCCGAAAGAAGCAGCGCTGTGCTCTTA TCGCCGCAGCGTCAGGCTCATTCGCGGCAGCCATGTTGAGATTATCGACGAGCATGACGGTGACAAGCCTGCGGTCCTGT CACTGATGACCTGCGTTGCGCCCCGCTCGCAGGCGGGGCGGCTGGTCCTGGACGGGCTCGGCGAAATTAGCGTGAGCGGT GCGGCAGAGCCAATCATCGAGGCAATCGACATCGGCGATCCCCGGCTGCGGCAGGCTTGGCCGGAGAGAATTTTCCGTAT TCTGCTGCCGTTTGAGACATCCCGCTTGTCGCTGACGATTACTTGA
Upstream 100 bases:
>100_bases TCAAACAACTTCCGATAACATCAGACAAATTTACTGGAAAGGTGAAAATAGGTATGATAGCAGGGGATTGCTAGACGGTG AGGAAGGGGAGGTGAGCATA
Downstream 100 bases:
>100_bases GGAGGGTGAGGATGAGAGTGACACTCACTGTGGTGGATGCTGCGGGCCAAAACCTGGCGCAGAGCAGTGCAGACCACGAA GCCTTTCTGGTCTATCGCCA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 601; Mature: 601
Protein sequence:
>601_residues MFSKHIGSLPPHLADFQPAAAADVHALLQRLGVEHLTALKAAGRTALEAEWPQIFASRYRDYTQTGNRSRFEDLYFRRRL MLNDLVLAECAKDTGEGGDDFIDAIIDGVILICEESGWQLPAHNAYGRGGPRQPLPDPDDPVVDLFAAETAANLATLVWL LRPALAQRDPRLPARIEQEIHRRIITPYLTRHFWWMGQGNERMNNWTAWITQNVLIATFSLPTSQEIRRAVLVKALGSLD AFLKDYAEDGACEEGVLYYRHAALCLFGAMTVLDQVVPDLCRPLWQAAKIRNMAEYILNMHVSGRHYFNFADSSAVLEPC SIREYLFGKAVGSKALMDFAAADLQQSADPLLSKEWNLWHRLMAATRLPDVKPAPAKPAAKGDIFYPGTGLFIARDNRFD LAVKGGHNGESHNHNDVGSLTLYKNGQPFLIDIGVETYTAKTFSPQRYEIWTMQSAYHNLPTFAGVMQQEGPECAARDVE TAFEVEEARISLEIAAAYPKEAALCSYRRSVRLIRGSHVEIIDEHDGDKPAVLSLMTCVAPRSQAGRLVLDGLGEISVSG AAEPIIEAIDIGDPRLRQAWPERIFRILLPFETSRLSLTIT
Sequences:
>Translated_601_residues MFSKHIGSLPPHLADFQPAAAADVHALLQRLGVEHLTALKAAGRTALEAEWPQIFASRYRDYTQTGNRSRFEDLYFRRRL MLNDLVLAECAKDTGEGGDDFIDAIIDGVILICEESGWQLPAHNAYGRGGPRQPLPDPDDPVVDLFAAETAANLATLVWL LRPALAQRDPRLPARIEQEIHRRIITPYLTRHFWWMGQGNERMNNWTAWITQNVLIATFSLPTSQEIRRAVLVKALGSLD AFLKDYAEDGACEEGVLYYRHAALCLFGAMTVLDQVVPDLCRPLWQAAKIRNMAEYILNMHVSGRHYFNFADSSAVLEPC SIREYLFGKAVGSKALMDFAAADLQQSADPLLSKEWNLWHRLMAATRLPDVKPAPAKPAAKGDIFYPGTGLFIARDNRFD LAVKGGHNGESHNHNDVGSLTLYKNGQPFLIDIGVETYTAKTFSPQRYEIWTMQSAYHNLPTFAGVMQQEGPECAARDVE TAFEVEEARISLEIAAAYPKEAALCSYRRSVRLIRGSHVEIIDEHDGDKPAVLSLMTCVAPRSQAGRLVLDGLGEISVSG AAEPIIEAIDIGDPRLRQAWPERIFRILLPFETSRLSLTIT >Mature_601_residues MFSKHIGSLPPHLADFQPAAAADVHALLQRLGVEHLTALKAAGRTALEAEWPQIFASRYRDYTQTGNRSRFEDLYFRRRL MLNDLVLAECAKDTGEGGDDFIDAIIDGVILICEESGWQLPAHNAYGRGGPRQPLPDPDDPVVDLFAAETAANLATLVWL LRPALAQRDPRLPARIEQEIHRRIITPYLTRHFWWMGQGNERMNNWTAWITQNVLIATFSLPTSQEIRRAVLVKALGSLD AFLKDYAEDGACEEGVLYYRHAALCLFGAMTVLDQVVPDLCRPLWQAAKIRNMAEYILNMHVSGRHYFNFADSSAVLEPC SIREYLFGKAVGSKALMDFAAADLQQSADPLLSKEWNLWHRLMAATRLPDVKPAPAKPAAKGDIFYPGTGLFIARDNRFD LAVKGGHNGESHNHNDVGSLTLYKNGQPFLIDIGVETYTAKTFSPQRYEIWTMQSAYHNLPTFAGVMQQEGPECAARDVE TAFEVEEARISLEIAAAYPKEAALCSYRRSVRLIRGSHVEIIDEHDGDKPAVLSLMTCVAPRSQAGRLVLDGLGEISVSG AAEPIIEAIDIGDPRLRQAWPERIFRILLPFETSRLSLTIT
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 67003; Mature: 67003
Theoretical pI: Translated: 5.96; Mature: 5.96
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFSKHIGSLPPHLADFQPAAAADVHALLQRLGVEHLTALKAAGRTALEAEWPQIFASRYR CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCHHHHHHHHHCCCCCHHHHHHHHHHHHHH DYTQTGNRSRFEDLYFRRRLMLNDLVLAECAKDTGEGGDDFIDAIIDGVILICEESGWQL HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCEEEEECCCCCCC PAHNAYGRGGPRQPLPDPDDPVVDLFAAETAANLATLVWLLRPALAQRDPRLPARIEQEI CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH HRRIITPYLTRHFWWMGQGNERMNNWTAWITQNVLIATFSLPTSQEIRRAVLVKALGSLD HHHHHHHHHHHHEEEECCCCCHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHH AFLKDYAEDGACEEGVLYYRHAALCLFGAMTVLDQVVPDLCRPLWQAAKIRNMAEYILNM HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH HVSGRHYFNFADSSAVLEPCSIREYLFGKAVGSKALMDFAAADLQQSADPLLSKEWNLWH CCCCCEEEEECCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH RLMAATRLPDVKPAPAKPAAKGDIFYPGTGLFIARDNRFDLAVKGGHNGESHNHNDVGSL HHHHHHCCCCCCCCCCCCCCCCCEEECCCEEEEEECCCEEEEEECCCCCCCCCCCCCCEE TLYKNGQPFLIDIGVETYTAKTFSPQRYEIWTMQSAYHNLPTFAGVMQQEGPECAARDVE EEEECCCEEEEEECCCEEEECCCCCCCEEEEEEHHHHHCCHHHHHHHHHCCCCHHHHHHH TAFEVEEARISLEIAAAYPKEAALCSYRRSVRLIRGSHVEIIDEHDGDKPAVLSLMTCVA HHHHHHHHHEEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHC PRSQAGRLVLDGLGEISVSGAAEPIIEAIDIGDPRLRQAWPERIFRILLPFETSRLSLTI CCCCCCCEEECCCCCEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEE T C >Mature Secondary Structure MFSKHIGSLPPHLADFQPAAAADVHALLQRLGVEHLTALKAAGRTALEAEWPQIFASRYR CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCHHHHHHHHHCCCCCHHHHHHHHHHHHHH DYTQTGNRSRFEDLYFRRRLMLNDLVLAECAKDTGEGGDDFIDAIIDGVILICEESGWQL HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCEEEEECCCCCCC PAHNAYGRGGPRQPLPDPDDPVVDLFAAETAANLATLVWLLRPALAQRDPRLPARIEQEI CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH HRRIITPYLTRHFWWMGQGNERMNNWTAWITQNVLIATFSLPTSQEIRRAVLVKALGSLD HHHHHHHHHHHHEEEECCCCCHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHH AFLKDYAEDGACEEGVLYYRHAALCLFGAMTVLDQVVPDLCRPLWQAAKIRNMAEYILNM HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH HVSGRHYFNFADSSAVLEPCSIREYLFGKAVGSKALMDFAAADLQQSADPLLSKEWNLWH CCCCCEEEEECCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH RLMAATRLPDVKPAPAKPAAKGDIFYPGTGLFIARDNRFDLAVKGGHNGESHNHNDVGSL HHHHHHCCCCCCCCCCCCCCCCCEEECCCEEEEEECCCEEEEEECCCCCCCCCCCCCCEE TLYKNGQPFLIDIGVETYTAKTFSPQRYEIWTMQSAYHNLPTFAGVMQQEGPECAARDVE EEEECCCEEEEEECCCEEEECCCCCCCEEEEEEHHHHHCCHHHHHHHHHCCCCHHHHHHH TAFEVEEARISLEIAAAYPKEAALCSYRRSVRLIRGSHVEIIDEHDGDKPAVLSLMTCVA HHHHHHHHHEEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHC PRSQAGRLVLDGLGEISVSGAAEPIIEAIDIGDPRLRQAWPERIFRILLPFETSRLSLTI CCCCCCCEEECCCCCEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEE T C
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA