| Definition | Agrobacterium vitis S4 plasmid pAtS4e, complete sequence. |
|---|---|
| Accession | NC_011981 |
| Length | 631,775 |
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The map label for this gene is 222102665
Identifier: 222102665
GI number: 222102665
Start: 307726
End: 308790
Strand: Direct
Name: 222102665
Synonym: Avi_7332
Alternate gene names: NA
Gene position: 307726-308790 (Clockwise)
Preceding gene: 222102657
Following gene: 222102671
Centisome position: 48.71
GC content: 57.65
Gene sequence:
>1065_bases GTGGGACGACGAGTTGTAAGGCATCAGACGGTTCGGCCCTTGGAGGATCGCGACGCTCAGGGCCTCAGTCCTGAAGATAT CGCAGATCATAACGGACGCACCGTTTCTGCGCTTTTGCTGCGTGAAGGGCCGCTGACGCGCCAGGAGCTTGCCGCACGGC TTAAGCTCACAGAGCCTGCCATTACCGGCATTCTTCAACGGCTGTTGTCGGCAGGCCTTGTGTCCAAGGGCAATCGCCAG ACCAGTACACGCTATAAAGCGGCGGAATTTTCACTTGTGTCATCCGGCGCTTACGGTCTTGGTGTTGAGCGTTGCCAGAA TGGTGGCTCCCTTGCTTTGTGTAATCTCGCCGGTGAGATGGTGCTTTATCAGCGCTTTGATCAAGATGAAGCCTTCTTTG CTGCTGTTCGGCAGATTGTGCAGGCAGAGATGGGATTCCCCGCCCCCATCGGTGTCGGCGTGGTGATGAATGCAGACAAG GATGATGCATTCACGACGGCTTTTGGCGAATTGCCAAGCTTTACTCTGTCCAAACCCGAGGCGGTGCTGGCTGGGGAGAG ATTGTTTGGCATCGGTGAGCCGGAAGGCGGGCTGGTTGTTGTGCTGATTGATGAACAGGTGCAGGCGGGCCTGATCATCA ATGGCCGCTTTTACCGCGGCACGCATGGCAGAGCGGGCGCAATTGGCGCCATGCGTCCTGGCCTGGCGGAAGGCACACTG GATGTGATGGCGAGTGCGGCGTCTTACAGGGCTTTCATTGCCGCGCAGGGTGAAAACGAGGTTGATCGCTGGATTGAACA GGCCGCCAGTCGCCTTCTGGACGGCGTTGTCACCATTGCCGGTTTCATATCGCCGGGAGCCATGTTGCTGGGCGGGCAAT TGCCCGCCGATGTGATTGATCGGCTGATTGAAAAAATCGCAGACGTCCGGCTGGGCAAAGAGCGATATTTTGTGCCCGCA GCCTGGATTCCGCCCGTACGCCCTTTAAGCTTTCCAGACCGCGACGCCGCTTATGGTGCTGCTGTTGCGCCGTTTATCGA ACTGCTGCTGCCAAAACCGAATTGA
Upstream 100 bases:
>100_bases GCTTCAACGAAGTGATTGACTGTATTGAGCAAAGCTTGTTTGCTTTCCTATGTTAACTGACGGCAAAGATTGCAATGAAA CCGCCGATGGAAGTGTGAGT
Downstream 100 bases:
>100_bases TCGATGCAGGCCGTATCGCTGTCGTCAGCGGTGAACGGCTGAGATGGGCAGAATCGGCAGAGGGAAGACAGAGCCGGTCG GCGAGCGCCATGGCGGCAGC
Product: Transcriptional regulator/sugar kinase
Products: NA
Alternate protein names: Rok Family Protein; Transcriptional Regulator/Sugar Kinase; Transcriptional Regulator Protein; ROK Family Protein
Number of amino acids: Translated: 354; Mature: 353
Protein sequence:
>354_residues MGRRVVRHQTVRPLEDRDAQGLSPEDIADHNGRTVSALLLREGPLTRQELAARLKLTEPAITGILQRLLSAGLVSKGNRQ TSTRYKAAEFSLVSSGAYGLGVERCQNGGSLALCNLAGEMVLYQRFDQDEAFFAAVRQIVQAEMGFPAPIGVGVVMNADK DDAFTTAFGELPSFTLSKPEAVLAGERLFGIGEPEGGLVVVLIDEQVQAGLIINGRFYRGTHGRAGAIGAMRPGLAEGTL DVMASAASYRAFIAAQGENEVDRWIEQAASRLLDGVVTIAGFISPGAMLLGGQLPADVIDRLIEKIADVRLGKERYFVPA AWIPPVRPLSFPDRDAAYGAAVAPFIELLLPKPN
Sequences:
>Translated_354_residues MGRRVVRHQTVRPLEDRDAQGLSPEDIADHNGRTVSALLLREGPLTRQELAARLKLTEPAITGILQRLLSAGLVSKGNRQ TSTRYKAAEFSLVSSGAYGLGVERCQNGGSLALCNLAGEMVLYQRFDQDEAFFAAVRQIVQAEMGFPAPIGVGVVMNADK DDAFTTAFGELPSFTLSKPEAVLAGERLFGIGEPEGGLVVVLIDEQVQAGLIINGRFYRGTHGRAGAIGAMRPGLAEGTL DVMASAASYRAFIAAQGENEVDRWIEQAASRLLDGVVTIAGFISPGAMLLGGQLPADVIDRLIEKIADVRLGKERYFVPA AWIPPVRPLSFPDRDAAYGAAVAPFIELLLPKPN >Mature_353_residues GRRVVRHQTVRPLEDRDAQGLSPEDIADHNGRTVSALLLREGPLTRQELAARLKLTEPAITGILQRLLSAGLVSKGNRQT STRYKAAEFSLVSSGAYGLGVERCQNGGSLALCNLAGEMVLYQRFDQDEAFFAAVRQIVQAEMGFPAPIGVGVVMNADKD DAFTTAFGELPSFTLSKPEAVLAGERLFGIGEPEGGLVVVLIDEQVQAGLIINGRFYRGTHGRAGAIGAMRPGLAEGTLD VMASAASYRAFIAAQGENEVDRWIEQAASRLLDGVVTIAGFISPGAMLLGGQLPADVIDRLIEKIADVRLGKERYFVPAA WIPPVRPLSFPDRDAAYGAAVAPFIELLLPKPN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 37879; Mature: 37748
Theoretical pI: Translated: 5.28; Mature: 5.28
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGRRVVRHQTVRPLEDRDAQGLSPEDIADHNGRTVSALLLREGPLTRQELAARLKLTEPA CCCCCCHHHCCCCCCCCCCCCCCCHHHHCCCCCEEEEEEECCCCCCHHHHHHHHCCCCHH ITGILQRLLSAGLVSKGNRQTSTRYKAAEFSLVSSGAYGLGVERCQNGGSLALCNLAGEM HHHHHHHHHHHHHHCCCCCCCCCHHHHHHEEEECCCCCCCCHHHHCCCCCEEEEHHHHHH VLYQRFDQDEAFFAAVRQIVQAEMGFPAPIGVGVVMNADKDDAFTTAFGELPSFTLSKPE HHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHCCCCCCCCCCC AVLAGERLFGIGEPEGGLVVVLIDEQVQAGLIINGRFYRGTHGRAGAIGAMRPGLAEGTL HHHCCCCEEECCCCCCCEEEEEECCCCCCCEEECCEEEECCCCCCCCCCCCCCCCCCCHH DVMASAASYRAFIAAQGENEVDRWIEQAASRLLDGVVTIAGFISPGAMLLGGQLPADVID HHHHHHHHHEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHH RLIEKIADVRLGKERYFVPAAWIPPVRPLSFPDRDAAYGAAVAPFIELLLPKPN HHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure GRRVVRHQTVRPLEDRDAQGLSPEDIADHNGRTVSALLLREGPLTRQELAARLKLTEPA CCCCCHHHCCCCCCCCCCCCCCCHHHHCCCCCEEEEEEECCCCCCHHHHHHHHCCCCHH ITGILQRLLSAGLVSKGNRQTSTRYKAAEFSLVSSGAYGLGVERCQNGGSLALCNLAGEM HHHHHHHHHHHHHHCCCCCCCCCHHHHHHEEEECCCCCCCCHHHHCCCCCEEEEHHHHHH VLYQRFDQDEAFFAAVRQIVQAEMGFPAPIGVGVVMNADKDDAFTTAFGELPSFTLSKPE HHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHCCCCCCCCCCC AVLAGERLFGIGEPEGGLVVVLIDEQVQAGLIINGRFYRGTHGRAGAIGAMRPGLAEGTL HHHCCCCEEECCCCCCCEEEEEECCCCCCCEEECCEEEECCCCCCCCCCCCCCCCCCCHH DVMASAASYRAFIAAQGENEVDRWIEQAASRLLDGVVTIAGFISPGAMLLGGQLPADVID HHHHHHHHHEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHH RLIEKIADVRLGKERYFVPAAWIPPVRPLSFPDRDAAYGAAVAPFIELLLPKPN HHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA