| Definition | Agrobacterium vitis S4 plasmid pAtS4e, complete sequence. |
|---|---|
| Accession | NC_011981 |
| Length | 631,775 |
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The map label for this gene is yqeM [H]
Identifier: 222102647
GI number: 222102647
Start: 270649
End: 271539
Strand: Reverse
Name: yqeM [H]
Synonym: Avi_7304
Alternate gene names: 222102647
Gene position: 271539-270649 (Counterclockwise)
Preceding gene: 222102648
Following gene: 222102646
Centisome position: 42.98
GC content: 59.93
Gene sequence:
>891_bases ATGAGCAGAGATATGCTTGAACAAGCAAGCAAATACGATCACTGGGCGTGGCTCTATAACCGCACGCTTGGGCCCCGCTA CGGCGCATATAAGATCGGTCCGATCGAGCGTGTGGTGCTGCCCCATGTGCCAGCTGGTGGTGCTATTCTGGATCTGTGCT GCGGCACCGGCCAGCTCGCGGCGGCTCTCTCGGAGCGCGGTTTTAACGTGATTGGCCTCGACGGCTCCGCCGACATGCTG CGCTATGCGCGCGAAAACGCCCCGTCGGTGACCTTCACGGAGGGCGATGCCTGCAATTTCACCTTCGACACGCCCTTTGA TGCCGTTTTGTGCACCAGCGCCTCGCTCAATCACATGCAAAGCCTCAACGATCTGGTCTTTGTGTTTTCGAGCGTCAGCC GCGCATTGAAGCCGGGCGGCATTTTCGTGTTCGACGTCAACCATCCGGCCCAGATGTCGCGCTATTGGCGCGGCCATCCA ACGGAGGGCGAGATCAACACCGACTTCGCGTGGCTGATTACACCGCAATATGACTCGGCAGCAAACCGGGGTGCCTTCAC CGTCGATATCTACCGTCGTCCCGATGCGCATCCCGTTTCCATGCTGGATCGGCTGTTCGTCCGGTTAGCTCAGTTCCGGC GTATCCGCCTCGCACTCCTCTCCCGCTTCAGCCGCTTGCGGCCGCATTGGGAGCATCATTCGGTTGTCAACCGAATCTGG GGTCACAATCTCGACGCCATGTCACGCGCGCTGCATGAAAGCGGCTTTTCCGTCGAATTGCGCAGCACGCAAGGCGGGCC GGTCGATGACAGCCATGCCGCCTATTTCTTCTGCCGGAAAGCGCCCACTGCCGAAAAGCAGGCAGAGACCGCAAAGGAAA CCGCCCTATGA
Upstream 100 bases:
>100_bases GCGCTCGCATCGATTGTCGAGCCAGCGCTCGACCTTCGCCTTTTTCGCTCCTATCTGCGCGCCTTCATTCTCTCTGGCGC GCTCAACCCTTCCAAAGAAA
Downstream 100 bases:
>100_bases ATGCGTTGACGAGCAATCCGACGCCCGCCCAAGCGGCAGCCGCCATCATAGCCGCTTTCAATATGAAGACGGAAAAGTCG AAGGTGGCAAGTGCGCAAAA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 296; Mature: 295
Protein sequence:
>296_residues MSRDMLEQASKYDHWAWLYNRTLGPRYGAYKIGPIERVVLPHVPAGGAILDLCCGTGQLAAALSERGFNVIGLDGSADML RYARENAPSVTFTEGDACNFTFDTPFDAVLCTSASLNHMQSLNDLVFVFSSVSRALKPGGIFVFDVNHPAQMSRYWRGHP TEGEINTDFAWLITPQYDSAANRGAFTVDIYRRPDAHPVSMLDRLFVRLAQFRRIRLALLSRFSRLRPHWEHHSVVNRIW GHNLDAMSRALHESGFSVELRSTQGGPVDDSHAAYFFCRKAPTAEKQAETAKETAL
Sequences:
>Translated_296_residues MSRDMLEQASKYDHWAWLYNRTLGPRYGAYKIGPIERVVLPHVPAGGAILDLCCGTGQLAAALSERGFNVIGLDGSADML RYARENAPSVTFTEGDACNFTFDTPFDAVLCTSASLNHMQSLNDLVFVFSSVSRALKPGGIFVFDVNHPAQMSRYWRGHP TEGEINTDFAWLITPQYDSAANRGAFTVDIYRRPDAHPVSMLDRLFVRLAQFRRIRLALLSRFSRLRPHWEHHSVVNRIW GHNLDAMSRALHESGFSVELRSTQGGPVDDSHAAYFFCRKAPTAEKQAETAKETAL >Mature_295_residues SRDMLEQASKYDHWAWLYNRTLGPRYGAYKIGPIERVVLPHVPAGGAILDLCCGTGQLAAALSERGFNVIGLDGSADMLR YARENAPSVTFTEGDACNFTFDTPFDAVLCTSASLNHMQSLNDLVFVFSSVSRALKPGGIFVFDVNHPAQMSRYWRGHPT EGEINTDFAWLITPQYDSAANRGAFTVDIYRRPDAHPVSMLDRLFVRLAQFRRIRLALLSRFSRLRPHWEHHSVVNRIWG HNLDAMSRALHESGFSVELRSTQGGPVDDSHAAYFFCRKAPTAEKQAETAKETAL
Specific function: May be a S-adenosyl-L-methionine (SAM)-dependent methyltransferase [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the methyltransferase superfamily [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013216 [H]
Pfam domain/function: PF08241 Methyltransf_11 [H]
EC number: NA
Molecular weight: Translated: 33166; Mature: 33035
Theoretical pI: Translated: 7.66; Mature: 7.66
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRDMLEQASKYDHWAWLYNRTLGPRYGAYKIGPIERVVLPHVPAGGAILDLCCGTGQLA CCHHHHHHHHCCCHHHEEHHCCCCCCCCCEEECCCCEEECCCCCCCCHHHHHHCCCHHHH AALSERGFNVIGLDGSADMLRYARENAPSVTFTEGDACNFTFDTPFDAVLCTSASLNHMQ HHHHHCCCEEEEECCCHHHHHHHHHCCCCEEEECCCCEEEEECCCCHHHHCCCHHHHHHH SLNDLVFVFSSVSRALKPGGIFVFDVNHPAQMSRYWRGHPTEGEINTDFAWLITPQYDSA HHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCC ANRGAFTVDIYRRPDAHPVSMLDRLFVRLAQFRRIRLALLSRFSRLRPHWEHHSVVNRIW CCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH GHNLDAMSRALHESGFSVELRSTQGGPVDDSHAAYFFCRKAPTAEKQAETAKETAL CCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCC >Mature Secondary Structure SRDMLEQASKYDHWAWLYNRTLGPRYGAYKIGPIERVVLPHVPAGGAILDLCCGTGQLA CHHHHHHHHCCCHHHEEHHCCCCCCCCCEEECCCCEEECCCCCCCCHHHHHHCCCHHHH AALSERGFNVIGLDGSADMLRYARENAPSVTFTEGDACNFTFDTPFDAVLCTSASLNHMQ HHHHHCCCEEEEECCCHHHHHHHHHCCCCEEEECCCCEEEEECCCCHHHHCCCHHHHHHH SLNDLVFVFSSVSRALKPGGIFVFDVNHPAQMSRYWRGHPTEGEINTDFAWLITPQYDSA HHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCC ANRGAFTVDIYRRPDAHPVSMLDRLFVRLAQFRRIRLALLSRFSRLRPHWEHHSVVNRIW CCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH GHNLDAMSRALHESGFSVELRSTQGGPVDDSHAAYFFCRKAPTAEKQAETAKETAL CCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8969508; 9384377; 7968523 [H]