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The map label for this gene is fecI [C]

Identifier: 222102633

GI number: 222102633

Start: 245080

End: 245622

Strand: Reverse

Name: fecI [C]

Synonym: Avi_7286

Alternate gene names: 222102633

Gene position: 245622-245080 (Counterclockwise)

Preceding gene: 222102634

Following gene: 222102632

Centisome position: 38.88

GC content: 59.48

Gene sequence:

>543_bases
ATGTCGAGATCTTCCTCCTCGTCCCTTGTCTGGGACACCGTTGACAGCAGCGAGTTGCTCAATCGAGCCATGGAAGCACA
CTATGCTGATATTACCAATGCGGTGCGGCGCCGGGGACACCCGAGTTCTACGGCCCGCGACGTGGTGCACGATCTCTACG
TGAAGCTCGCCGCCAAACCGGAGGTTCTCCTGAACAAGCGGTCGATCAAGGCCTTTCTCTGCCGTGCCGCCATCAATCTC
GGCATTGACCGCCAACGCAGGGAAACGAAGGAAGCCCGGCTGTTCTCAGGATCGGAGCGTGAGGCCCTCTCGGCGGCAAG
CACCGGGCACGCGCCGGACCACACTCTGGAAATAGAAGCGCGACTTGCAGCCCTTCGGGAAGCAATTGCGGAACTGCCGG
AGAGGCGACGTGTCGTCTTCATTCTCCATCGCCTTTATCATCTGACACCAGACCAGATCAGCACCAGGCTCAACATCTCC
AGAAACATGGTCGACCGGCACCTGCGGCGTGCGTTTGCCCATTGCCTTGACCGGATTCTCTAG

Upstream 100 bases:

>100_bases
GGCATTGCACTTGCACGTGTTTTCGGGATTGTTTAGCCATTCCCCATGACGGTTCAGCCACGTCTATCCTGACCTACCGT
TCGCTGGGAACCATGTGCAG

Downstream 100 bases:

>100_bases
AGTCAGTCAGGTTCAAATTGAACCAGACTGACTCTCGTTTCTTTCGTTTTCGTTTGTCTTTTCGGGAAAACCGGTGGCCA
CTTTTCCCTGACAAACTCTT

Product: sigma factor

Products: NA

Alternate protein names: Sigma-; Fec I Like Protein; ECF Subfamily RNA Polymerase Sigma-24 Factor

Number of amino acids: Translated: 180; Mature: 179

Protein sequence:

>180_residues
MSRSSSSSLVWDTVDSSELLNRAMEAHYADITNAVRRRGHPSSTARDVVHDLYVKLAAKPEVLLNKRSIKAFLCRAAINL
GIDRQRRETKEARLFSGSEREALSAASTGHAPDHTLEIEARLAALREAIAELPERRRVVFILHRLYHLTPDQISTRLNIS
RNMVDRHLRRAFAHCLDRIL

Sequences:

>Translated_180_residues
MSRSSSSSLVWDTVDSSELLNRAMEAHYADITNAVRRRGHPSSTARDVVHDLYVKLAAKPEVLLNKRSIKAFLCRAAINL
GIDRQRRETKEARLFSGSEREALSAASTGHAPDHTLEIEARLAALREAIAELPERRRVVFILHRLYHLTPDQISTRLNIS
RNMVDRHLRRAFAHCLDRIL
>Mature_179_residues
SRSSSSSLVWDTVDSSELLNRAMEAHYADITNAVRRRGHPSSTARDVVHDLYVKLAAKPEVLLNKRSIKAFLCRAAINLG
IDRQRRETKEARLFSGSEREALSAASTGHAPDHTLEIEARLAALREAIAELPERRRVVFILHRLYHLTPDQISTRLNISR
NMVDRHLRRAFAHCLDRIL

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Regulates The Fec Genes For Iron Dicitrate Transport (Probable). [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20483; Mature: 20351

Theoretical pI: Translated: 10.70; Mature: 10.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRSSSSSLVWDTVDSSELLNRAMEAHYADITNAVRRRGHPSSTARDVVHDLYVKLAAKP
CCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCC
EVLLNKRSIKAFLCRAAINLGIDRQRRETKEARLFSGSEREALSAASTGHAPDHTLEIEA
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHH
RLAALREAIAELPERRRVVFILHRLYHLTPDQISTRLNISRNMVDRHLRRAFAHCLDRIL
HHHHHHHHHHHCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SRSSSSSLVWDTVDSSELLNRAMEAHYADITNAVRRRGHPSSTARDVVHDLYVKLAAKP
CCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCC
EVLLNKRSIKAFLCRAAINLGIDRQRRETKEARLFSGSEREALSAASTGHAPDHTLEIEA
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHH
RLAALREAIAELPERRRVVFILHRLYHLTPDQISTRLNISRNMVDRHLRRAFAHCLDRIL
HHHHHHHHHHHCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA