Click here to switch to the map view.

The map label for this gene is ydfH [C]

Identifier: 222102609

GI number: 222102609

Start: 216867

End: 217577

Strand: Reverse

Name: ydfH [C]

Synonym: Avi_7259

Alternate gene names: 222102609

Gene position: 217577-216867 (Counterclockwise)

Preceding gene: 222102611

Following gene: 222102608

Centisome position: 34.44

GC content: 55.27

Gene sequence:

>711_bases
ATGAAGGGTGGCAAAGGCGAGCTCTATGATGATCTCAAGCGCCAAATTCTGACGATGGAACTCGATCCGGACGAAGATCT
GGACGAAGTATCGCTGAGTGAAAAATACGGCCTCTCGCGGACACCCGTCAGGGAAGTTTTCCGGCGTCTGGAAGGGGAAG
GCTATGTCGATATCCGCGCCAACAAGGGTGCGCGAGTTATCCCGATGAACCATTCGACGCTGCGCCACTTCTTCCTTGTT
GCACCGATGATCTACGCCGCCGTTGGGCGACTTGCGGTCCAGAACTTCAAGCCCGGACAGCTTTGCGACCTTCAGATCAC
CCAGGAACGGTTTCGCGAGGCGAGCATGGCGCAGGATGCTCTGGCCATGACGCTTTCGAACAACCGGTTTCACGCAATCA
TCGGCGAGATGTCGGGCAATGAATACCTTCAGCCAAGCCTTGGCAGGCTGCTGATCGATCACGGCCGTATCGGCCATACA
TTCTTTAGGCCGCGCAACGCAGACATGCATGAGCGGCTACAAAAATCAGTCGGACACCACGACGGCATTATCGCCGCGAT
CAGCGCGCGTGACGAAGATGCCGTCGTTGATCTCGTGTTTGAACACTGGGAATTGTCACGCGAGAACATGGAAATGTTCA
TCGCTCCCCAAGCGCTTAAGGCGGACGCATTGGTCGATACGCCAATGCAATCGATGGAGAAATCATCATGA

Upstream 100 bases:

>100_bases
AAAATACAATACCGTTGACATAGCCCGGACGTCATGCAAATTTTGTTGTCATAAACCAACGGCGCCCCTTGGGCGGACAA
GTTGATGACGGGGAACTGGA

Downstream 100 bases:

>100_bases
AATTCGAAGGTATCTATACCCCGGCGGTGACACCGCTTGGGCCAGATGGGCAGATTGATCGTGAAGGCTTTGCCGCCGTC
CTTGAATCGCTCATCGAAGC

Product: transcriptional regulator GntR family

Products: NA

Alternate protein names: Transcriptional Regulator GntR Family; Transcriptional Regulator; Transcriptional Regulator Protein; GntR Domain-Containing Protein; Regulatory Protein; Transcriptional Regulator Gntr Family; HTH-Type Transcriptional Regulator; FCD Domain Protein; Transcription Regulator; Mn-Dependent Transcriptional Regulator; Transcriptional Regulator GntR; Regulatory Protein GntR HTHGntR C-Terminal Domain; Transcriptional Regulatory Protein; GntR-Like; Regulatory Protein GntR; Transcription Regulator Family Protein; Transcription Regulator Protein; GntR Domain Protein; GntR Family Regulatory Protein; Transcriptional Regulator GntR Family Protein; GntR Transcriptional Regulator GntR; Transcriptional Regulator YdhC; GntR Family Transcription Regulator Protein

Number of amino acids: Translated: 236; Mature: 236

Protein sequence:

>236_residues
MKGGKGELYDDLKRQILTMELDPDEDLDEVSLSEKYGLSRTPVREVFRRLEGEGYVDIRANKGARVIPMNHSTLRHFFLV
APMIYAAVGRLAVQNFKPGQLCDLQITQERFREASMAQDALAMTLSNNRFHAIIGEMSGNEYLQPSLGRLLIDHGRIGHT
FFRPRNADMHERLQKSVGHHDGIIAAISARDEDAVVDLVFEHWELSRENMEMFIAPQALKADALVDTPMQSMEKSS

Sequences:

>Translated_236_residues
MKGGKGELYDDLKRQILTMELDPDEDLDEVSLSEKYGLSRTPVREVFRRLEGEGYVDIRANKGARVIPMNHSTLRHFFLV
APMIYAAVGRLAVQNFKPGQLCDLQITQERFREASMAQDALAMTLSNNRFHAIIGEMSGNEYLQPSLGRLLIDHGRIGHT
FFRPRNADMHERLQKSVGHHDGIIAAISARDEDAVVDLVFEHWELSRENMEMFIAPQALKADALVDTPMQSMEKSS
>Mature_236_residues
MKGGKGELYDDLKRQILTMELDPDEDLDEVSLSEKYGLSRTPVREVFRRLEGEGYVDIRANKGARVIPMNHSTLRHFFLV
APMIYAAVGRLAVQNFKPGQLCDLQITQERFREASMAQDALAMTLSNNRFHAIIGEMSGNEYLQPSLGRLLIDHGRIGHT
FFRPRNADMHERLQKSVGHHDGIIAAISARDEDAVVDLVFEHWELSRENMEMFIAPQALKADALVDTPMQSMEKSS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 26740; Mature: 26740

Theoretical pI: Translated: 5.82; Mature: 5.82

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
5.1 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKGGKGELYDDLKRQILTMELDPDEDLDEVSLSEKYGLSRTPVREVFRRLEGEGYVDIRA
CCCCCCCHHHHHHHHEEEEECCCCCCHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEEEE
NKGARVIPMNHSTLRHFFLVAPMIYAAVGRLAVQNFKPGQLCDLQITQERFREASMAQDA
CCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHEEHHHHHHHHHHHHHH
LAMTLSNNRFHAIIGEMSGNEYLQPSLGRLLIDHGRIGHTFFRPRNADMHERLQKSVGHH
HHEEECCCEEEEEEECCCCCCCCCCCHHHHHHCCCCCCCEEECCCCCCHHHHHHHHCCCC
DGIIAAISARDEDAVVDLVFEHWELSRENMEMFIAPQALKADALVDTPMQSMEKSS
CCEEEEEECCCCHHHHHHHHHHHHCCCCCCEEEECCCHHCCCHHHHCCHHHHHCCC
>Mature Secondary Structure
MKGGKGELYDDLKRQILTMELDPDEDLDEVSLSEKYGLSRTPVREVFRRLEGEGYVDIRA
CCCCCCCHHHHHHHHEEEEECCCCCCHHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEEEE
NKGARVIPMNHSTLRHFFLVAPMIYAAVGRLAVQNFKPGQLCDLQITQERFREASMAQDA
CCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHEEHHHHHHHHHHHHHH
LAMTLSNNRFHAIIGEMSGNEYLQPSLGRLLIDHGRIGHTFFRPRNADMHERLQKSVGHH
HHEEECCCEEEEEEECCCCCCCCCCCHHHHHHCCCCCCCEEECCCCCCHHHHHHHHCCCC
DGIIAAISARDEDAVVDLVFEHWELSRENMEMFIAPQALKADALVDTPMQSMEKSS
CCEEEEEECCCCHHHHHHHHHHHHCCCCCCEEEECCCHHCCCHHHHCCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA