| Definition | Agrobacterium vitis S4 plasmid pAtS4e, complete sequence. |
|---|---|
| Accession | NC_011981 |
| Length | 631,775 |
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The map label for this gene is ordL [H]
Identifier: 222102606
GI number: 222102606
Start: 213106
End: 214452
Strand: Reverse
Name: ordL [H]
Synonym: Avi_7256
Alternate gene names: 222102606
Gene position: 214452-213106 (Counterclockwise)
Preceding gene: 222102607
Following gene: 222102605
Centisome position: 33.94
GC content: 57.91
Gene sequence:
>1347_bases ATGAACAAAATATCAGTCAAACGTTTGCCCGTTGAAAATGGTGTCTCCGGCTGGGAGGCGATCAGCACGCGTTCGTTTCC CCTCCGCAGCCTCGAAGGCAACGTGACTGCGGATTGGCTGATTGTCGGTGCGGGCTTTGCGGGTCTTTCCGCTGCCCGTC GTCTGCTACAGCTTCGACCAGACGACAAGATTGTCATTCTCGACGCAAGCGAAGTGGGAAAAGGCGGCTCGGGACGAAAT TCCGGTTTCATGATCGATGTTCCTCACGACCTGTCGTCTGGCGAATATTCAAGTGGCAGTACCGACGATACCCGCATCGA AATGGCGCAGAACCGCACGGCGATTGCCTTTGCAACGCAAGCTGCGGCGGAATACGGAATGTCAAGCGAGACGTTCGATC CGTCCGGCAAGATCAATGCGGCGGCAACCGAGCGCGGCATGAAGCTAAATGAGGATTTTGGCAAATCCCTGCTGAATGCG GGCGAGAAGCACAGTTTCCTCGATGCGGCACAAATGCGGGAGATCACCGGAACCGATTTCTACCTCGGTGGCATTTACAC GCCGGGGGCCGTGCTCATCCAGCCCGCCGACTATATCAGAAACTTCGCAGCCGGGCTTTGGCAGCAGGTCGATATCTTCG AGCGCTCGCCTGTCACGTCCCTGATGCGGGAAAGCGGCCTATGGACAGCGTCTTCACCACGGGGCAGTGTCTCTGCACCC AGGGTCATTCTGGGCGTCAACGGCCATATCAATGACTTCGGTCATTTCAACGGTCGCCTCATGCACTTCTTCGGATATGC CTCAATGACGGCTCCGTTCCCGGCAGAGGATTTCGGGCGCAAGGCAAGCGGGCATGATCGATGGGCTCTGTTGCCTGCCG ATCCCATGGGAGCAACGGTTCGGAAAATCACATCGAACGGCCAGTCGCGCATCGCTTTGCGGACCAAGTGGACCTATGAC TTCAGCCTGAAGCTGACGGATCAGCGTCTGCGAAAAATGGCTCGGGAACATCGGGTGTCGCTGGACAGGCGTTTTCCCGC ATTGAAGGACCTGCCGTTCGAACACTGCTGGGCAGGCCGCATCTGCCTCACCCGCAACCATGTGCCGGCCTTCGGCGAGA TCGAAGAAGGGCTGTACTCGGCTTGCTGCGAAAACGGTCTTGGCACGGTGAAAAGCACGCTGGCTGGCATGCTGACAGCG GAACTCGCCACCGGAAACACCTCGACACATCTTGAAGAATTCAACGATCACGCACAGCCGAGCAGGCTTCCACCGGAGCC TTTCACATGGCTCGGCGCCAACACCGTGATCAAATGGCAGGAATTGCGTGCAGGCCGCGAGGGATAA
Upstream 100 bases:
>100_bases TCGGTGGCCGCGACAAGTCAATCTTCGCGCATGACAATTATTGCGAACTGAAGACAATCTGGATCGATATTTCCGAGCGT TCCGTGGATGAGACAATCCG
Downstream 100 bases:
>100_bases AACGTCGCCGCGCAATGGGAGACCGCGCTTAAGCGCGAGGCTTCAACGATAATGGGAACGTAAAACTAGGAGCGAAAAAT GAAGTTTCTGTGGAAGGCAC
Product: oxidoreductase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 448; Mature: 448
Protein sequence:
>448_residues MNKISVKRLPVENGVSGWEAISTRSFPLRSLEGNVTADWLIVGAGFAGLSAARRLLQLRPDDKIVILDASEVGKGGSGRN SGFMIDVPHDLSSGEYSSGSTDDTRIEMAQNRTAIAFATQAAAEYGMSSETFDPSGKINAAATERGMKLNEDFGKSLLNA GEKHSFLDAAQMREITGTDFYLGGIYTPGAVLIQPADYIRNFAAGLWQQVDIFERSPVTSLMRESGLWTASSPRGSVSAP RVILGVNGHINDFGHFNGRLMHFFGYASMTAPFPAEDFGRKASGHDRWALLPADPMGATVRKITSNGQSRIALRTKWTYD FSLKLTDQRLRKMAREHRVSLDRRFPALKDLPFEHCWAGRICLTRNHVPAFGEIEEGLYSACCENGLGTVKSTLAGMLTA ELATGNTSTHLEEFNDHAQPSRLPPEPFTWLGANTVIKWQELRAGREG
Sequences:
>Translated_448_residues MNKISVKRLPVENGVSGWEAISTRSFPLRSLEGNVTADWLIVGAGFAGLSAARRLLQLRPDDKIVILDASEVGKGGSGRN SGFMIDVPHDLSSGEYSSGSTDDTRIEMAQNRTAIAFATQAAAEYGMSSETFDPSGKINAAATERGMKLNEDFGKSLLNA GEKHSFLDAAQMREITGTDFYLGGIYTPGAVLIQPADYIRNFAAGLWQQVDIFERSPVTSLMRESGLWTASSPRGSVSAP RVILGVNGHINDFGHFNGRLMHFFGYASMTAPFPAEDFGRKASGHDRWALLPADPMGATVRKITSNGQSRIALRTKWTYD FSLKLTDQRLRKMAREHRVSLDRRFPALKDLPFEHCWAGRICLTRNHVPAFGEIEEGLYSACCENGLGTVKSTLAGMLTA ELATGNTSTHLEEFNDHAQPSRLPPEPFTWLGANTVIKWQELRAGREG >Mature_448_residues MNKISVKRLPVENGVSGWEAISTRSFPLRSLEGNVTADWLIVGAGFAGLSAARRLLQLRPDDKIVILDASEVGKGGSGRN SGFMIDVPHDLSSGEYSSGSTDDTRIEMAQNRTAIAFATQAAAEYGMSSETFDPSGKINAAATERGMKLNEDFGKSLLNA GEKHSFLDAAQMREITGTDFYLGGIYTPGAVLIQPADYIRNFAAGLWQQVDIFERSPVTSLMRESGLWTASSPRGSVSAP RVILGVNGHINDFGHFNGRLMHFFGYASMTAPFPAEDFGRKASGHDRWALLPADPMGATVRKITSNGQSRIALRTKWTYD FSLKLTDQRLRKMAREHRVSLDRRFPALKDLPFEHCWAGRICLTRNHVPAFGEIEEGLYSACCENGLGTVKSTLAGMLTA ELATGNTSTHLEEFNDHAQPSRLPPEPFTWLGANTVIKWQELRAGREG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006076 [H]
Pfam domain/function: PF01266 DAO [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 49035; Mature: 49035
Theoretical pI: Translated: 7.36; Mature: 7.36
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNKISVKRLPVENGVSGWEAISTRSFPLRSLEGNVTADWLIVGAGFAGLSAARRLLQLRP CCCCEEEECCHHCCCCCHHHHCCCCCCCHHCCCCCEEEEEEEECCHHHHHHHHHHHHCCC DDKIVILDASEVGKGGSGRNSGFMIDVPHDLSSGEYSSGSTDDTRIEMAQNRTAIAFATQ CCCEEEEEHHHCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEEECCCCEEEEEEHH AAAEYGMSSETFDPSGKINAAATERGMKLNEDFGKSLLNAGEKHSFLDAAQMREITGTDF HHHHHCCCCCCCCCCCCEEHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCCCE YLGGIYTPGAVLIQPADYIRNFAAGLWQQVDIFERSPVTSLMRESGLWTASSPRGSVSAP EECCEECCCEEEECCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCEECCCCCCCCCCC RVILGVNGHINDFGHFNGRLMHFFGYASMTAPFPAEDFGRKASGHDRWALLPADPMGATV EEEEECCCCCCCCCCCCCEEEEEECHHHCCCCCCHHHHCCCCCCCCCEEEEECCCCCHHH RKITSNGQSRIALRTKWTYDFSLKLTDQRLRKMAREHRVSLDRRFPALKDLPFEHCWAGR HHHHCCCCEEEEEEEEEEEEEEEEECHHHHHHHHHHHHHHHHHCCCHHHCCCHHHHCCCC ICLTRNHVPAFGEIEEGLYSACCENGLGTVKSTLAGMLTAELATGNTSTHLEEFNDHAQP EEEECCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCC SRLPPEPFTWLGANTVIKWQELRAGREG CCCCCCCCEECCCCCEEEEHHHCCCCCC >Mature Secondary Structure MNKISVKRLPVENGVSGWEAISTRSFPLRSLEGNVTADWLIVGAGFAGLSAARRLLQLRP CCCCEEEECCHHCCCCCHHHHCCCCCCCHHCCCCCEEEEEEEECCHHHHHHHHHHHHCCC DDKIVILDASEVGKGGSGRNSGFMIDVPHDLSSGEYSSGSTDDTRIEMAQNRTAIAFATQ CCCEEEEEHHHCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEEECCCCEEEEEEHH AAAEYGMSSETFDPSGKINAAATERGMKLNEDFGKSLLNAGEKHSFLDAAQMREITGTDF HHHHHCCCCCCCCCCCCEEHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCCCE YLGGIYTPGAVLIQPADYIRNFAAGLWQQVDIFERSPVTSLMRESGLWTASSPRGSVSAP EECCEECCCEEEECCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCEECCCCCCCCCCC RVILGVNGHINDFGHFNGRLMHFFGYASMTAPFPAEDFGRKASGHDRWALLPADPMGATV EEEEECCCCCCCCCCCCCEEEEEECHHHCCCCCCHHHHCCCCCCCCCEEEEECCCCCHHH RKITSNGQSRIALRTKWTYDFSLKLTDQRLRKMAREHRVSLDRRFPALKDLPFEHCWAGR HHHHCCCCEEEEEEEEEEEEEEEEECHHHHHHHHHHHHHHHHHCCCHHHCCCHHHHCCCC ICLTRNHVPAFGEIEEGLYSACCENGLGTVKSTLAGMLTAELATGNTSTHLEEFNDHAQP EEEECCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCC SRLPPEPFTWLGANTVIKWQELRAGREG CCCCCCCCEECCCCCEEEEHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]