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The map label for this gene is glxA [H]

Identifier: 222102600

GI number: 222102600

Start: 207210

End: 208208

Strand: Reverse

Name: glxA [H]

Synonym: Avi_7250

Alternate gene names: 222102600

Gene position: 208208-207210 (Counterclockwise)

Preceding gene: 222102601

Following gene: 222102599

Centisome position: 32.96

GC content: 55.46

Gene sequence:

>999_bases
ATGACGCCCTCCGATACCAACGCCCCGGTCGACCGCCTGAAAATCGGCTTCGTGCTCGCGAGATCATTCACACTTTCGGC
CTTCGCATTGTTCGTGGACACGCTGCGCCTCGCCAGCGATGAATTCGATCGTTCAGGGCGGGTGCTGGCCGACTGGGACG
TGCTCGGCAGCACGCGGCACCTGATCACCTCCAGCTGTGGCGTTCAGGTTGCACCGACTTCAGACCTGGTGGAAGATCCA
AGCCAGTTTCAATTCATCGTCGTCGTCGGCGGGTTGCTGAACAACGAACAGCCAATCGACCGGGAAACGGCTGCGTTTTT
GAAGAAGGCTGCCGCAAAAAACGTCAAGCTGATCGGTGTCTGCACCGGTTCTTTCATCCTGGCCGAACTTGGCTTGATGA
AAAGCCATCGCACATGCGTAAGCTGGCTGCATTATAACGCATTTCGGGAGCGTTTCCCCGATCTTCAGGTTCGCTCCGAC
CGTATTTTCAATCTCGACAGAACACGGGGCTCGTGTGTGGGCGGGAGTAGCGCTGCGGACATGGCGGCGTTGATCGTCCG
CCGTCACATCAGCAAGGATGCCGAAAGAAATGCTCTCGAGGTTCTTCACATCGAGAAAGCCCGGTCAGCTCTTGCCATTC
AAACACGCAAACCGCTGTCCATCGAGTGCAACGATCCCAGGATCAGAGCGACGCTCATTATGATGGAGCAGCATATCGAG
GGTAATCTACCGATCCAGGATCTGGCCGCAGCGGTTGGCCTATCCAGAAGACAACTTGAACGTCTCTTTATCAGCGAAAC
CAAGAGCTCTCCGGCAATGATCTACAGAAGAGTGCGATTGGAGCGCGCAAAACATCTTCTTGTCCAGTCCAAAGCACCTT
TGGTCGAAATTGCGCTTGAGGTCGGGTTCGGAAATGCGTCGCACTTCGCCAAGGTCTTTGCTCAGACGTTCGGCCAATCG
CCAACTGGCTTAAGAACAGCAATCCGAGCTACTCTCTGA

Upstream 100 bases:

>100_bases
TCGTGGACGATCGAGATCCTCTGGCTCACGGCTTCCAGATCAAATAAAGTAGGGCTTACAGGCACCTCGCGATACATGCC
TGCCCCGATTGGAGTTTAGA

Downstream 100 bases:

>100_bases
TCGGCATCCTCAACTTAACGAAAAACAGCAATCCGACGGGCGATGATAGCCGGTGATCCCGTATATCGCCGCCATCACTT
TCCCGCTGAAATCATTGCTC

Product: transcriptional regulator AraC family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 332; Mature: 331

Protein sequence:

>332_residues
MTPSDTNAPVDRLKIGFVLARSFTLSAFALFVDTLRLASDEFDRSGRVLADWDVLGSTRHLITSSCGVQVAPTSDLVEDP
SQFQFIVVVGGLLNNEQPIDRETAAFLKKAAAKNVKLIGVCTGSFILAELGLMKSHRTCVSWLHYNAFRERFPDLQVRSD
RIFNLDRTRGSCVGGSSAADMAALIVRRHISKDAERNALEVLHIEKARSALAIQTRKPLSIECNDPRIRATLIMMEQHIE
GNLPIQDLAAAVGLSRRQLERLFISETKSSPAMIYRRVRLERAKHLLVQSKAPLVEIALEVGFGNASHFAKVFAQTFGQS
PTGLRTAIRATL

Sequences:

>Translated_332_residues
MTPSDTNAPVDRLKIGFVLARSFTLSAFALFVDTLRLASDEFDRSGRVLADWDVLGSTRHLITSSCGVQVAPTSDLVEDP
SQFQFIVVVGGLLNNEQPIDRETAAFLKKAAAKNVKLIGVCTGSFILAELGLMKSHRTCVSWLHYNAFRERFPDLQVRSD
RIFNLDRTRGSCVGGSSAADMAALIVRRHISKDAERNALEVLHIEKARSALAIQTRKPLSIECNDPRIRATLIMMEQHIE
GNLPIQDLAAAVGLSRRQLERLFISETKSSPAMIYRRVRLERAKHLLVQSKAPLVEIALEVGFGNASHFAKVFAQTFGQS
PTGLRTAIRATL
>Mature_331_residues
TPSDTNAPVDRLKIGFVLARSFTLSAFALFVDTLRLASDEFDRSGRVLADWDVLGSTRHLITSSCGVQVAPTSDLVEDPS
QFQFIVVVGGLLNNEQPIDRETAAFLKKAAAKNVKLIGVCTGSFILAELGLMKSHRTCVSWLHYNAFRERFPDLQVRSDR
IFNLDRTRGSCVGGSSAADMAALIVRRHISKDAERNALEVLHIEKARSALAIQTRKPLSIECNDPRIRATLIMMEQHIEG
NLPIQDLAAAVGLSRRQLERLFISETKSSPAMIYRRVRLERAKHLLVQSKAPLVEIALEVGFGNASHFAKVFAQTFGQSP
TGLRTAIRATL

Specific function: Positive Activator Of Genes Required For L-Rhamnose Utilization, Probably Of The Rhamnose Transporter Gene (Rhat). [C]

COG id: COG4977

COG function: function code K; Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR002818 [H]

Pfam domain/function: PF01965 DJ-1_PfpI; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 36666; Mature: 36535

Theoretical pI: Translated: 10.08; Mature: 10.08

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPSDTNAPVDRLKIGFVLARSFTLSAFALFVDTLRLASDEFDRSGRVLADWDVLGSTRH
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHCCHHH
LITSSCGVQVAPTSDLVEDPSQFQFIVVVGGLLNNEQPIDRETAAFLKKAAAKNVKLIGV
HHHHCCCEEECCCHHHHCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCEEEEEE
CTGSFILAELGLMKSHRTCVSWLHYNAFRERFPDLQVRSDRIFNLDRTRGSCVGGSSAAD
ECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCEEEECCCCCCCCCCCHHHH
MAALIVRRHISKDAERNALEVLHIEKARSALAIQTRKPLSIECNDPRIRATLIMMEQHIE
HHHHHHHHHHHCHHHCCHHHHHHHHHHHHHEEEECCCCCEEEECCCCEEHHHEEHHHHCC
GNLPIQDLAAAVGLSRRQLERLFISETKSSPAMIYRRVRLERAKHLLVQSKAPLVEIALE
CCCCHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE
VGFGNASHFAKVFAQTFGQSPTGLRTAIRATL
ECCCCHHHHHHHHHHHHCCCCCHHHHHHHHCC
>Mature Secondary Structure 
TPSDTNAPVDRLKIGFVLARSFTLSAFALFVDTLRLASDEFDRSGRVLADWDVLGSTRH
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHCCHHH
LITSSCGVQVAPTSDLVEDPSQFQFIVVVGGLLNNEQPIDRETAAFLKKAAAKNVKLIGV
HHHHCCCEEECCCHHHHCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCEEEEEE
CTGSFILAELGLMKSHRTCVSWLHYNAFRERFPDLQVRSDRIFNLDRTRGSCVGGSSAAD
ECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCEEEECCCCCCCCCCCHHHH
MAALIVRRHISKDAERNALEVLHIEKARSALAIQTRKPLSIECNDPRIRATLIMMEQHIE
HHHHHHHHHHHCHHHCCHHHHHHHHHHHHHEEEECCCCCEEEECCCCEEHHHEEHHHHCC
GNLPIQDLAAAVGLSRRQLERLFISETKSSPAMIYRRVRLERAKHLLVQSKAPLVEIALE
CCCCHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE
VGFGNASHFAKVFAQTFGQSPTGLRTAIRATL
ECCCCHHHHHHHHHHHHCCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481430 [H]