| Definition | Agrobacterium vitis S4 plasmid pAtS4e, complete sequence. |
|---|---|
| Accession | NC_011981 |
| Length | 631,775 |
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The map label for this gene is 222102495
Identifier: 222102495
GI number: 222102495
Start: 91322
End: 91936
Strand: Direct
Name: 222102495
Synonym: Avi_7109
Alternate gene names: NA
Gene position: 91322-91936 (Clockwise)
Preceding gene: 222102494
Following gene: 222102496
Centisome position: 14.45
GC content: 58.54
Gene sequence:
>615_bases ATGAGCCGCTTTGTGGCAATCACCATGCGTGACGCCGTGTTGCCTGAGCGGAACGAGCACCGGGACTGCCTTGAAACCGG GTGGTGGACTTTCCTGGAGGCCTGCGAGTTTGTGCCAGTTTGTCTGCCCAACCATCTCGGGCAAGCAGAACTCATTCTCG ACAGCGGTATCCTGAGCGGTGTGATCCTGAGCGGTGGCGGTAATGTCGCGCGCTCACTGGAGCATGTTCGGGCCCGGGAC AGAGTTGAAGATATCGTTCTGGCCCGCGCGAAAGAGAAGGGGCTCCCGGTTCTCGGGGTGTGCCGGGGTTTGCAAAAACT CTGCCACGCGTTTGGCGGGACTCTTGTGGAGCGTGCAGGCCATACCGTGACCAGGCATAGGATTGCGGGCAACTGGGGGG AGCGCTGCGTGAATTCCTATCATGACTACGGGATTGATGAGGTGCCGAGCCAATGCCACGTTTTGGCAGAGGCGGAGGAT GGTTCGCCGGAATGGTTGGCGCATGACAGCCTGCCTGTATCAGGGATCATGTGGCACCCCGAGCGCAATGTGGTGCCGGA TCAAGCCGATATTGCCTTGTTCAGGGCTAGATTTTCAACCATAGGATGCTATTAA
Upstream 100 bases:
>100_bases GGATTCCGGCGGTGGTTGGGGCCGGGCGGCATTATGACAAATGGAAGACCTTTTCGGTGTTGCGGTGTGATTGCCGCGCC CGTCGGGTTGAGCCAATCAT
Downstream 100 bases:
>100_bases TGCGCGCCATCATGCTTGTAGCCGGTCGAGGTTCACGACTTCGTAATCTTACGGACATGCGACCGAAATGCCTCGTTCCT TTCCGGGGCAGGCCGCTTCT
Product: hypothetical protein
Products: NA
Alternate protein names: Glutamine Amidotransferase Class-I; Sugar Metabolism Cluster Protein; Peptidase; Glutamine Amidotransferase
Number of amino acids: Translated: 204; Mature: 203
Protein sequence:
>204_residues MSRFVAITMRDAVLPERNEHRDCLETGWWTFLEACEFVPVCLPNHLGQAELILDSGILSGVILSGGGNVARSLEHVRARD RVEDIVLARAKEKGLPVLGVCRGLQKLCHAFGGTLVERAGHTVTRHRIAGNWGERCVNSYHDYGIDEVPSQCHVLAEAED GSPEWLAHDSLPVSGIMWHPERNVVPDQADIALFRARFSTIGCY
Sequences:
>Translated_204_residues MSRFVAITMRDAVLPERNEHRDCLETGWWTFLEACEFVPVCLPNHLGQAELILDSGILSGVILSGGGNVARSLEHVRARD RVEDIVLARAKEKGLPVLGVCRGLQKLCHAFGGTLVERAGHTVTRHRIAGNWGERCVNSYHDYGIDEVPSQCHVLAEAED GSPEWLAHDSLPVSGIMWHPERNVVPDQADIALFRARFSTIGCY >Mature_203_residues SRFVAITMRDAVLPERNEHRDCLETGWWTFLEACEFVPVCLPNHLGQAELILDSGILSGVILSGGGNVARSLEHVRARDR VEDIVLARAKEKGLPVLGVCRGLQKLCHAFGGTLVERAGHTVTRHRIAGNWGERCVNSYHDYGIDEVPSQCHVLAEAEDG SPEWLAHDSLPVSGIMWHPERNVVPDQADIALFRARFSTIGCY
Specific function: Unknown
COG id: COG2071
COG function: function code R; Predicted glutamine amidotransferases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22591; Mature: 22460
Theoretical pI: Translated: 6.16; Mature: 6.16
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.9 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 5.4 %Cys+Met (Translated Protein) 3.9 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRFVAITMRDAVLPERNEHRDCLETGWWTFLEACEFVPVCLPNHLGQAELILDSGILSG CCCEEEEEEHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHCCCCCCCHHHEEHHHHHHC VILSGGGNVARSLEHVRARDRVEDIVLARAKEKGLPVLGVCRGLQKLCHAFGGTLVERAG EEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHCC HTVTRHRIAGNWGERCVNSYHDYGIDEVPSQCHVLAEAEDGSPEWLAHDSLPVSGIMWHP CHHHHHHHCCCHHHHHHHHHHHCCCCCCCCHHEEEEECCCCCCCEEECCCCCCCCEEECC ERNVVPDQADIALFRARFSTIGCY CCCCCCCHHHHHHHHHHHHHCCCC >Mature Secondary Structure SRFVAITMRDAVLPERNEHRDCLETGWWTFLEACEFVPVCLPNHLGQAELILDSGILSG CCEEEEEEHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHCCCCCCCHHHEEHHHHHHC VILSGGGNVARSLEHVRARDRVEDIVLARAKEKGLPVLGVCRGLQKLCHAFGGTLVERAG EEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHCC HTVTRHRIAGNWGERCVNSYHDYGIDEVPSQCHVLAEAEDGSPEWLAHDSLPVSGIMWHP CHHHHHHHCCCHHHHHHHHHHHCCCCCCCCHHEEEEECCCCCCCEEECCCCCCCCEEECC ERNVVPDQADIALFRARFSTIGCY CCCCCCCHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA