Definition Agrobacterium vitis S4 plasmid pAtS4e, complete sequence.
Accession NC_011981
Length 631,775

Click here to switch to the map view.

The map label for this gene is 222102495

Identifier: 222102495

GI number: 222102495

Start: 91322

End: 91936

Strand: Direct

Name: 222102495

Synonym: Avi_7109

Alternate gene names: NA

Gene position: 91322-91936 (Clockwise)

Preceding gene: 222102494

Following gene: 222102496

Centisome position: 14.45

GC content: 58.54

Gene sequence:

>615_bases
ATGAGCCGCTTTGTGGCAATCACCATGCGTGACGCCGTGTTGCCTGAGCGGAACGAGCACCGGGACTGCCTTGAAACCGG
GTGGTGGACTTTCCTGGAGGCCTGCGAGTTTGTGCCAGTTTGTCTGCCCAACCATCTCGGGCAAGCAGAACTCATTCTCG
ACAGCGGTATCCTGAGCGGTGTGATCCTGAGCGGTGGCGGTAATGTCGCGCGCTCACTGGAGCATGTTCGGGCCCGGGAC
AGAGTTGAAGATATCGTTCTGGCCCGCGCGAAAGAGAAGGGGCTCCCGGTTCTCGGGGTGTGCCGGGGTTTGCAAAAACT
CTGCCACGCGTTTGGCGGGACTCTTGTGGAGCGTGCAGGCCATACCGTGACCAGGCATAGGATTGCGGGCAACTGGGGGG
AGCGCTGCGTGAATTCCTATCATGACTACGGGATTGATGAGGTGCCGAGCCAATGCCACGTTTTGGCAGAGGCGGAGGAT
GGTTCGCCGGAATGGTTGGCGCATGACAGCCTGCCTGTATCAGGGATCATGTGGCACCCCGAGCGCAATGTGGTGCCGGA
TCAAGCCGATATTGCCTTGTTCAGGGCTAGATTTTCAACCATAGGATGCTATTAA

Upstream 100 bases:

>100_bases
GGATTCCGGCGGTGGTTGGGGCCGGGCGGCATTATGACAAATGGAAGACCTTTTCGGTGTTGCGGTGTGATTGCCGCGCC
CGTCGGGTTGAGCCAATCAT

Downstream 100 bases:

>100_bases
TGCGCGCCATCATGCTTGTAGCCGGTCGAGGTTCACGACTTCGTAATCTTACGGACATGCGACCGAAATGCCTCGTTCCT
TTCCGGGGCAGGCCGCTTCT

Product: hypothetical protein

Products: NA

Alternate protein names: Glutamine Amidotransferase Class-I; Sugar Metabolism Cluster Protein; Peptidase; Glutamine Amidotransferase

Number of amino acids: Translated: 204; Mature: 203

Protein sequence:

>204_residues
MSRFVAITMRDAVLPERNEHRDCLETGWWTFLEACEFVPVCLPNHLGQAELILDSGILSGVILSGGGNVARSLEHVRARD
RVEDIVLARAKEKGLPVLGVCRGLQKLCHAFGGTLVERAGHTVTRHRIAGNWGERCVNSYHDYGIDEVPSQCHVLAEAED
GSPEWLAHDSLPVSGIMWHPERNVVPDQADIALFRARFSTIGCY

Sequences:

>Translated_204_residues
MSRFVAITMRDAVLPERNEHRDCLETGWWTFLEACEFVPVCLPNHLGQAELILDSGILSGVILSGGGNVARSLEHVRARD
RVEDIVLARAKEKGLPVLGVCRGLQKLCHAFGGTLVERAGHTVTRHRIAGNWGERCVNSYHDYGIDEVPSQCHVLAEAED
GSPEWLAHDSLPVSGIMWHPERNVVPDQADIALFRARFSTIGCY
>Mature_203_residues
SRFVAITMRDAVLPERNEHRDCLETGWWTFLEACEFVPVCLPNHLGQAELILDSGILSGVILSGGGNVARSLEHVRARDR
VEDIVLARAKEKGLPVLGVCRGLQKLCHAFGGTLVERAGHTVTRHRIAGNWGERCVNSYHDYGIDEVPSQCHVLAEAEDG
SPEWLAHDSLPVSGIMWHPERNVVPDQADIALFRARFSTIGCY

Specific function: Unknown

COG id: COG2071

COG function: function code R; Predicted glutamine amidotransferases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22591; Mature: 22460

Theoretical pI: Translated: 6.16; Mature: 6.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.9 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
3.9 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRFVAITMRDAVLPERNEHRDCLETGWWTFLEACEFVPVCLPNHLGQAELILDSGILSG
CCCEEEEEEHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHCCCCCCCHHHEEHHHHHHC
VILSGGGNVARSLEHVRARDRVEDIVLARAKEKGLPVLGVCRGLQKLCHAFGGTLVERAG
EEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHCC
HTVTRHRIAGNWGERCVNSYHDYGIDEVPSQCHVLAEAEDGSPEWLAHDSLPVSGIMWHP
CHHHHHHHCCCHHHHHHHHHHHCCCCCCCCHHEEEEECCCCCCCEEECCCCCCCCEEECC
ERNVVPDQADIALFRARFSTIGCY
CCCCCCCHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SRFVAITMRDAVLPERNEHRDCLETGWWTFLEACEFVPVCLPNHLGQAELILDSGILSG
CCEEEEEEHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHCCCCCCCHHHEEHHHHHHC
VILSGGGNVARSLEHVRARDRVEDIVLARAKEKGLPVLGVCRGLQKLCHAFGGTLVERAG
EEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHCC
HTVTRHRIAGNWGERCVNSYHDYGIDEVPSQCHVLAEAEDGSPEWLAHDSLPVSGIMWHP
CHHHHHHHCCCHHHHHHHHHHHCCCCCCCCHHEEEEECCCCCCCEEECCCCCCCCEEECC
ERNVVPDQADIALFRARFSTIGCY
CCCCCCCHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA