| Definition | Agrobacterium vitis S4 plasmid pAtS4e, complete sequence. |
|---|---|
| Accession | NC_011981 |
| Length | 631,775 |
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The map label for this gene is 222102475
Identifier: 222102475
GI number: 222102475
Start: 72799
End: 73260
Strand: Direct
Name: 222102475
Synonym: Avi_7082
Alternate gene names: NA
Gene position: 72799-73260 (Clockwise)
Preceding gene: 222102474
Following gene: 222102476
Centisome position: 11.52
GC content: 58.01
Gene sequence:
>462_bases ATGAGCGTTAAGCCTGTAGCAAACGGTCGGGACTTTCCCGATATTCTTGCGGGTGGCGTACTGATATTTCTGGGAGCGCT TGGCCTTTGGGCCGGGCGCGACCTGACATACGGCACTCCGGCAATGATGGGCCCCGGTTTCCTTCCGAAGTCCCTCTGCG CCATCATCGCGCTCATCGGCGTGATCGTCCTTATCAAGGCACTTTCCAAGCCGCATGAGTCACTGGATGCGGTTAACCCC AAGCCGTTGCTTATTCTGGTCGCCGCCATCGCAGGATTTGCGTTTGCAGCCGAACGCTTCGGCTTTGTCGCTGCAACCAT CTGGCTTCTGGTTGTGGGAAGCCTTGCCGATCCGGAATCGCGCTGGAAGGAGATTTTCATCTCGACCGCAGTGCTGACGA CGCTCGGCGCGCTTCTCTTCGTTTACGGACTTGGCGTCCAGATGCCGATTTGGCCCTTCTGA
Upstream 100 bases:
>100_bases TGCCACTGGCTTATCTCAGCGGTCCTGACTGGGAAAAGGAAATGCCAACGCGTCTCGCTCGCTTCCAGAAGATCTGGGAC ACTACTCCTTGGGTGCAGCA
Downstream 100 bases:
>100_bases CGACCTTTCCTGATTTGATCGGATTATTTCGATGGCTTTTCTCGACGTCCTTATGCTCGGATTCTCCGAGGCCCTGACAC CAACCAACTTAATGTTTTGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 153; Mature: 152
Protein sequence:
>153_residues MSVKPVANGRDFPDILAGGVLIFLGALGLWAGRDLTYGTPAMMGPGFLPKSLCAIIALIGVIVLIKALSKPHESLDAVNP KPLLILVAAIAGFAFAAERFGFVAATIWLLVVGSLADPESRWKEIFISTAVLTTLGALLFVYGLGVQMPIWPF
Sequences:
>Translated_153_residues MSVKPVANGRDFPDILAGGVLIFLGALGLWAGRDLTYGTPAMMGPGFLPKSLCAIIALIGVIVLIKALSKPHESLDAVNP KPLLILVAAIAGFAFAAERFGFVAATIWLLVVGSLADPESRWKEIFISTAVLTTLGALLFVYGLGVQMPIWPF >Mature_152_residues SVKPVANGRDFPDILAGGVLIFLGALGLWAGRDLTYGTPAMMGPGFLPKSLCAIIALIGVIVLIKALSKPHESLDAVNPK PLLILVAAIAGFAFAAERFGFVAATIWLLVVGSLADPESRWKEIFISTAVLTTLGALLFVYGLGVQMPIWPF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 16150; Mature: 16018
Theoretical pI: Translated: 8.49; Mature: 8.49
Prosite motif: PS00237 G_PROTEIN_RECEP_F1_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSVKPVANGRDFPDILAGGVLIFLGALGLWAGRDLTYGTPAMMGPGFLPKSLCAIIALIG CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCCCCCHHHHHHHHHHHH VIVLIKALSKPHESLDAVNPKPLLILVAAIAGFAFAAERFGFVAATIWLLVVGSLADPES HHHHHHHHHCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH RWKEIFISTAVLTTLGALLFVYGLGVQMPIWPF HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC >Mature Secondary Structure SVKPVANGRDFPDILAGGVLIFLGALGLWAGRDLTYGTPAMMGPGFLPKSLCAIIALIG CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCCCCCHHHHHHHHHHHH VIVLIKALSKPHESLDAVNPKPLLILVAAIAGFAFAAERFGFVAATIWLLVVGSLADPES HHHHHHHHHCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH RWKEIFISTAVLTTLGALLFVYGLGVQMPIWPF HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA