Definition Agrobacterium vitis S4 plasmid pAtS4e, complete sequence.
Accession NC_011981
Length 631,775

Click here to switch to the map view.

The map label for this gene is 222102452

Identifier: 222102452

GI number: 222102452

Start: 46095

End: 47153

Strand: Reverse

Name: 222102452

Synonym: Avi_7053

Alternate gene names: NA

Gene position: 47153-46095 (Counterclockwise)

Preceding gene: 222102453

Following gene: 222102451

Centisome position: 7.46

GC content: 54.77

Gene sequence:

>1059_bases
ATGCCAAAAAAACAGGTTAGCTTTACGCGTCTTTGCGCTGTCAACAAGGATATCGTCTACATCGGAACTACTCCCGATGA
TCAGGAAATGGCGACACCATTTACCGCCATTTGCCAATATGACGCGGGAGAGTGGTCTTACGAAACGTTCGACTTCCCAT
TGGCAAGCCTGACGTTGTACCGCGAGCCCGGCAGTTCGCAGCGGGTCCTATATGTGCTGGGCGAGGCTGGAACAGCGGTC
AATTTCCACACGAAGACACGTGAAATAATTGTGGATCTGCTAAATGCTCCTCGGAGAAAGCACAGACTTGGCTATTTGCA
ATCGATCAGGCAGGTCGGCGATCATCTGTACGTTTGCGGCGACGGTGGCCAGACCTACCGACGCTCGTCGGACGGGCAAT
GGCAAGCCCTGGATTTGGGGTTCTTCGACGGACCCGACGCCATCATGGATCCGAAGTCAGAGCTGAGATTAATGAGTAGT
TTGACCCGCATAAAAGAAAATCGAACAGAAGAAAATTACGCCAAGCTAAAGATACTAAGAGAAGAGAACCAATCCAAAAC
CCTTTGGAACCTTTCCGGCCTTTCTGAAGACAGCATCTACTTTGCCGGGGAAAAGAAAACCGTCTACTGGTTTGACGGAG
AGAAAATCACCGAAATCCCGACCGAGGCGGATCGTGGCCTCCTCTCCATCCTGGTGGAAAATGAGGACCGCGTCTGGGTC
GCTGGCCGTGATGGGAACTTCCTCGTCGGCAATCACAAGACAGGGTTCCGTGATCTCGACGCGCTGCGGGGTATCGATGG
CTGGCCGAGCTTCAACGGCATGACCATGTTCAACGGGCGCCTCTATCTCTCCAGCTATGCCGATCCTCGCGGGCTGTTCG
TGTTCGACGGCCACCATGTCGAACAAGTGCGCTCCGGTCTTACGCCCGACATCGACGATGTCTCCGCCGTCGAGGCGATC
GACGGCGTGCTATGGGTCATGGGCCGCAAGGACTTGCTGCGCTATGACGGCACGCACTGGGAGCGCATCGATTTCCCTGG
CAATGATCCGCTGAGGTGA

Upstream 100 bases:

>100_bases
ATATTCTAGGAAGAACGACCATTATGCCACCTGCTGAAGGAACGGACCCTTATAATCTGCTGTCGACCGGTGCTCACGCG
ACAGTTCACTGAGAGGCAAT

Downstream 100 bases:

>100_bases
GCCGATGAAAAAGGCCAGCTTCACGCGTCTTTGCGCGGTCAACAGGGACATCGTCTATCTCGGCACCACGCCCGATGACC
AGGAAATGGCTACGCCGTTC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 352; Mature: 351

Protein sequence:

>352_residues
MPKKQVSFTRLCAVNKDIVYIGTTPDDQEMATPFTAICQYDAGEWSYETFDFPLASLTLYREPGSSQRVLYVLGEAGTAV
NFHTKTREIIVDLLNAPRRKHRLGYLQSIRQVGDHLYVCGDGGQTYRRSSDGQWQALDLGFFDGPDAIMDPKSELRLMSS
LTRIKENRTEENYAKLKILREENQSKTLWNLSGLSEDSIYFAGEKKTVYWFDGEKITEIPTEADRGLLSILVENEDRVWV
AGRDGNFLVGNHKTGFRDLDALRGIDGWPSFNGMTMFNGRLYLSSYADPRGLFVFDGHHVEQVRSGLTPDIDDVSAVEAI
DGVLWVMGRKDLLRYDGTHWERIDFPGNDPLR

Sequences:

>Translated_352_residues
MPKKQVSFTRLCAVNKDIVYIGTTPDDQEMATPFTAICQYDAGEWSYETFDFPLASLTLYREPGSSQRVLYVLGEAGTAV
NFHTKTREIIVDLLNAPRRKHRLGYLQSIRQVGDHLYVCGDGGQTYRRSSDGQWQALDLGFFDGPDAIMDPKSELRLMSS
LTRIKENRTEENYAKLKILREENQSKTLWNLSGLSEDSIYFAGEKKTVYWFDGEKITEIPTEADRGLLSILVENEDRVWV
AGRDGNFLVGNHKTGFRDLDALRGIDGWPSFNGMTMFNGRLYLSSYADPRGLFVFDGHHVEQVRSGLTPDIDDVSAVEAI
DGVLWVMGRKDLLRYDGTHWERIDFPGNDPLR
>Mature_351_residues
PKKQVSFTRLCAVNKDIVYIGTTPDDQEMATPFTAICQYDAGEWSYETFDFPLASLTLYREPGSSQRVLYVLGEAGTAVN
FHTKTREIIVDLLNAPRRKHRLGYLQSIRQVGDHLYVCGDGGQTYRRSSDGQWQALDLGFFDGPDAIMDPKSELRLMSSL
TRIKENRTEENYAKLKILREENQSKTLWNLSGLSEDSIYFAGEKKTVYWFDGEKITEIPTEADRGLLSILVENEDRVWVA
GRDGNFLVGNHKTGFRDLDALRGIDGWPSFNGMTMFNGRLYLSSYADPRGLFVFDGHHVEQVRSGLTPDIDDVSAVEAID
GVLWVMGRKDLLRYDGTHWERIDFPGNDPLR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 40002; Mature: 39871

Theoretical pI: Translated: 4.96; Mature: 4.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKKQVSFTRLCAVNKDIVYIGTTPDDQEMATPFTAICQYDAGEWSYETFDFPLASLTLY
CCCCCCCHHHHEECCCCEEEEECCCCCHHHHCCHHEEEECCCCCCCCEEECCCCEEEEEE
REPGSSQRVLYVLGEAGTAVNFHTKTREIIVDLLNAPRRKHRLGYLQSIRQVGDHLYVCG
ECCCCCCEEEEEEECCCCEEEEECHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEEEEEC
DGGQTYRRSSDGQWQALDLGFFDGPDAIMDPKSELRLMSSLTRIKENRTEENYAKLKILR
CCCCCCCCCCCCCEEEEEECCCCCCCHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEE
EENQSKTLWNLSGLSEDSIYFAGEKKTVYWFDGEKITEIPTEADRGLLSILVENEDRVWV
CCCCCCEEEEECCCCCCCEEEECCCEEEEEECCCEEEECCCCCCCCEEEEEEECCCEEEE
AGRDGNFLVGNHKTGFRDLDALRGIDGWPSFNGMTMFNGRLYLSSYADPRGLFVFDGHHV
EECCCCEEEECCCCCCHHHHHHCCCCCCCCCCCEEEECCEEEEECCCCCCEEEEECCCHH
EQVRSGLTPDIDDVSAVEAIDGVLWVMGRKDLLRYDGTHWERIDFPGNDPLR
HHHHCCCCCCCCCHHHHHHHHHHEEECCCHHHHHCCCCCEEEECCCCCCCCC
>Mature Secondary Structure 
PKKQVSFTRLCAVNKDIVYIGTTPDDQEMATPFTAICQYDAGEWSYETFDFPLASLTLY
CCCCCCHHHHEECCCCEEEEECCCCCHHHHCCHHEEEECCCCCCCCEEECCCCEEEEEE
REPGSSQRVLYVLGEAGTAVNFHTKTREIIVDLLNAPRRKHRLGYLQSIRQVGDHLYVCG
ECCCCCCEEEEEEECCCCEEEEECHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEEEEEC
DGGQTYRRSSDGQWQALDLGFFDGPDAIMDPKSELRLMSSLTRIKENRTEENYAKLKILR
CCCCCCCCCCCCCEEEEEECCCCCCCHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEE
EENQSKTLWNLSGLSEDSIYFAGEKKTVYWFDGEKITEIPTEADRGLLSILVENEDRVWV
CCCCCCEEEEECCCCCCCEEEECCCEEEEEECCCEEEECCCCCCCCEEEEEEECCCEEEE
AGRDGNFLVGNHKTGFRDLDALRGIDGWPSFNGMTMFNGRLYLSSYADPRGLFVFDGHHV
EECCCCEEEECCCCCCHHHHHHCCCCCCCCCCCEEEECCEEEEECCCCCCEEEEECCCHH
EQVRSGLTPDIDDVSAVEAIDGVLWVMGRKDLLRYDGTHWERIDFPGNDPLR
HHHHCCCCCCCCCHHHHHHHHHHEEECCCHHHHHCCCCCEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA