| Definition | Agrobacterium vitis S4 plasmid pAtS4e, complete sequence. |
|---|---|
| Accession | NC_011981 |
| Length | 631,775 |
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The map label for this gene is 222102452
Identifier: 222102452
GI number: 222102452
Start: 46095
End: 47153
Strand: Reverse
Name: 222102452
Synonym: Avi_7053
Alternate gene names: NA
Gene position: 47153-46095 (Counterclockwise)
Preceding gene: 222102453
Following gene: 222102451
Centisome position: 7.46
GC content: 54.77
Gene sequence:
>1059_bases ATGCCAAAAAAACAGGTTAGCTTTACGCGTCTTTGCGCTGTCAACAAGGATATCGTCTACATCGGAACTACTCCCGATGA TCAGGAAATGGCGACACCATTTACCGCCATTTGCCAATATGACGCGGGAGAGTGGTCTTACGAAACGTTCGACTTCCCAT TGGCAAGCCTGACGTTGTACCGCGAGCCCGGCAGTTCGCAGCGGGTCCTATATGTGCTGGGCGAGGCTGGAACAGCGGTC AATTTCCACACGAAGACACGTGAAATAATTGTGGATCTGCTAAATGCTCCTCGGAGAAAGCACAGACTTGGCTATTTGCA ATCGATCAGGCAGGTCGGCGATCATCTGTACGTTTGCGGCGACGGTGGCCAGACCTACCGACGCTCGTCGGACGGGCAAT GGCAAGCCCTGGATTTGGGGTTCTTCGACGGACCCGACGCCATCATGGATCCGAAGTCAGAGCTGAGATTAATGAGTAGT TTGACCCGCATAAAAGAAAATCGAACAGAAGAAAATTACGCCAAGCTAAAGATACTAAGAGAAGAGAACCAATCCAAAAC CCTTTGGAACCTTTCCGGCCTTTCTGAAGACAGCATCTACTTTGCCGGGGAAAAGAAAACCGTCTACTGGTTTGACGGAG AGAAAATCACCGAAATCCCGACCGAGGCGGATCGTGGCCTCCTCTCCATCCTGGTGGAAAATGAGGACCGCGTCTGGGTC GCTGGCCGTGATGGGAACTTCCTCGTCGGCAATCACAAGACAGGGTTCCGTGATCTCGACGCGCTGCGGGGTATCGATGG CTGGCCGAGCTTCAACGGCATGACCATGTTCAACGGGCGCCTCTATCTCTCCAGCTATGCCGATCCTCGCGGGCTGTTCG TGTTCGACGGCCACCATGTCGAACAAGTGCGCTCCGGTCTTACGCCCGACATCGACGATGTCTCCGCCGTCGAGGCGATC GACGGCGTGCTATGGGTCATGGGCCGCAAGGACTTGCTGCGCTATGACGGCACGCACTGGGAGCGCATCGATTTCCCTGG CAATGATCCGCTGAGGTGA
Upstream 100 bases:
>100_bases ATATTCTAGGAAGAACGACCATTATGCCACCTGCTGAAGGAACGGACCCTTATAATCTGCTGTCGACCGGTGCTCACGCG ACAGTTCACTGAGAGGCAAT
Downstream 100 bases:
>100_bases GCCGATGAAAAAGGCCAGCTTCACGCGTCTTTGCGCGGTCAACAGGGACATCGTCTATCTCGGCACCACGCCCGATGACC AGGAAATGGCTACGCCGTTC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 352; Mature: 351
Protein sequence:
>352_residues MPKKQVSFTRLCAVNKDIVYIGTTPDDQEMATPFTAICQYDAGEWSYETFDFPLASLTLYREPGSSQRVLYVLGEAGTAV NFHTKTREIIVDLLNAPRRKHRLGYLQSIRQVGDHLYVCGDGGQTYRRSSDGQWQALDLGFFDGPDAIMDPKSELRLMSS LTRIKENRTEENYAKLKILREENQSKTLWNLSGLSEDSIYFAGEKKTVYWFDGEKITEIPTEADRGLLSILVENEDRVWV AGRDGNFLVGNHKTGFRDLDALRGIDGWPSFNGMTMFNGRLYLSSYADPRGLFVFDGHHVEQVRSGLTPDIDDVSAVEAI DGVLWVMGRKDLLRYDGTHWERIDFPGNDPLR
Sequences:
>Translated_352_residues MPKKQVSFTRLCAVNKDIVYIGTTPDDQEMATPFTAICQYDAGEWSYETFDFPLASLTLYREPGSSQRVLYVLGEAGTAV NFHTKTREIIVDLLNAPRRKHRLGYLQSIRQVGDHLYVCGDGGQTYRRSSDGQWQALDLGFFDGPDAIMDPKSELRLMSS LTRIKENRTEENYAKLKILREENQSKTLWNLSGLSEDSIYFAGEKKTVYWFDGEKITEIPTEADRGLLSILVENEDRVWV AGRDGNFLVGNHKTGFRDLDALRGIDGWPSFNGMTMFNGRLYLSSYADPRGLFVFDGHHVEQVRSGLTPDIDDVSAVEAI DGVLWVMGRKDLLRYDGTHWERIDFPGNDPLR >Mature_351_residues PKKQVSFTRLCAVNKDIVYIGTTPDDQEMATPFTAICQYDAGEWSYETFDFPLASLTLYREPGSSQRVLYVLGEAGTAVN FHTKTREIIVDLLNAPRRKHRLGYLQSIRQVGDHLYVCGDGGQTYRRSSDGQWQALDLGFFDGPDAIMDPKSELRLMSSL TRIKENRTEENYAKLKILREENQSKTLWNLSGLSEDSIYFAGEKKTVYWFDGEKITEIPTEADRGLLSILVENEDRVWVA GRDGNFLVGNHKTGFRDLDALRGIDGWPSFNGMTMFNGRLYLSSYADPRGLFVFDGHHVEQVRSGLTPDIDDVSAVEAID GVLWVMGRKDLLRYDGTHWERIDFPGNDPLR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 40002; Mature: 39871
Theoretical pI: Translated: 4.96; Mature: 4.96
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPKKQVSFTRLCAVNKDIVYIGTTPDDQEMATPFTAICQYDAGEWSYETFDFPLASLTLY CCCCCCCHHHHEECCCCEEEEECCCCCHHHHCCHHEEEECCCCCCCCEEECCCCEEEEEE REPGSSQRVLYVLGEAGTAVNFHTKTREIIVDLLNAPRRKHRLGYLQSIRQVGDHLYVCG ECCCCCCEEEEEEECCCCEEEEECHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEEEEEC DGGQTYRRSSDGQWQALDLGFFDGPDAIMDPKSELRLMSSLTRIKENRTEENYAKLKILR CCCCCCCCCCCCCEEEEEECCCCCCCHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEE EENQSKTLWNLSGLSEDSIYFAGEKKTVYWFDGEKITEIPTEADRGLLSILVENEDRVWV CCCCCCEEEEECCCCCCCEEEECCCEEEEEECCCEEEECCCCCCCCEEEEEEECCCEEEE AGRDGNFLVGNHKTGFRDLDALRGIDGWPSFNGMTMFNGRLYLSSYADPRGLFVFDGHHV EECCCCEEEECCCCCCHHHHHHCCCCCCCCCCCEEEECCEEEEECCCCCCEEEEECCCHH EQVRSGLTPDIDDVSAVEAIDGVLWVMGRKDLLRYDGTHWERIDFPGNDPLR HHHHCCCCCCCCCHHHHHHHHHHEEECCCHHHHHCCCCCEEEECCCCCCCCC >Mature Secondary Structure PKKQVSFTRLCAVNKDIVYIGTTPDDQEMATPFTAICQYDAGEWSYETFDFPLASLTLY CCCCCCHHHHEECCCCEEEEECCCCCHHHHCCHHEEEECCCCCCCCEEECCCCEEEEEE REPGSSQRVLYVLGEAGTAVNFHTKTREIIVDLLNAPRRKHRLGYLQSIRQVGDHLYVCG ECCCCCCEEEEEEECCCCEEEEECHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEEEEEC DGGQTYRRSSDGQWQALDLGFFDGPDAIMDPKSELRLMSSLTRIKENRTEENYAKLKILR CCCCCCCCCCCCCEEEEEECCCCCCCHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEE EENQSKTLWNLSGLSEDSIYFAGEKKTVYWFDGEKITEIPTEADRGLLSILVENEDRVWV CCCCCCEEEEECCCCCCCEEEECCCEEEEEECCCEEEECCCCCCCCEEEEEEECCCEEEE AGRDGNFLVGNHKTGFRDLDALRGIDGWPSFNGMTMFNGRLYLSSYADPRGLFVFDGHHV EECCCCEEEECCCCCCHHHHHHCCCCCCCCCCCEEEECCEEEEECCCCCCEEEEECCCHH EQVRSGLTPDIDDVSAVEAIDGVLWVMGRKDLLRYDGTHWERIDFPGNDPLR HHHHCCCCCCCCCHHHHHHHHHHEEECCCHHHHHCCCCCEEEECCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA