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The map label for this gene is oppA [H]

Identifier: 222102433

GI number: 222102433

Start: 28572

End: 30185

Strand: Reverse

Name: oppA [H]

Synonym: Avi_7030

Alternate gene names: 222102433

Gene position: 30185-28572 (Counterclockwise)

Preceding gene: 222102436

Following gene: 222102432

Centisome position: 4.78

GC content: 52.42

Gene sequence:

>1614_bases
TTGAGAAAACTTCTTTTGCTGACAACCTGTCTGGCCTTTTCATTTTCCAGTCTTTCCTATGCTGACGCCGGCACGAAGAA
TGGCGAGAAGCTAGCAGCAAACCAGACTTATACCTATAGGGTACTGGATTCTTTCAAGACGCTGGACCCGCAATTAAATG
CAGACACGGATGGGTCTGACGCTCTTCGCAATCTGTTTGAAACTCTGATGAATGAGGATACGCAGGGCAATCTGGTTCCC
GGCGCAGCATCAAGCTACGATGTATCGAGCGATAAGATGCTCTACACATTCCATCTGCGGCCCGAGGCAAAATGGTCCGA
TGGCACGCCCGTCACCGCAGGCGATTTTGTTTACGCTTGGCAACGGCTGGCCGATCCCAAGACAGCCTCTGAATATGCCT
CCTATCTTGAAATGATGCAGGTGGAAAACACCACAGACATCATTGGCGGCAAGAAGCCGCCGCAGGAGCTGGGCGTGAAG
GCCGTGGATGACCATACATTTCAGGTCAAGCTGATCGCACCCATTCCTTACTTCGTGAAGATGACGGTGAATGCCTCGAT
GTCCCCGGTCAAGAAATCGGTGATCGATAAGTTCGGCGACGACTGGACCAAGCCGGGCAATCTGGTTGGCAACGGCGCCT
ATGTTTTGACCGAGCATGTTCCCGGCGAAAAGCTGGTGATGAAGCGCAACCCGAACTATTGGAACAACGCCAATACCGTG
CTCGACACGGTCACAGCTCTGATTATCAACGATGGCAATCAGGCCATGACCCGTTATCTTGCCGGGGAACTTGATGAAGT
CGGTATTCCTACCGGTCAGTATCCGCGCATGAAGAAGGATTATCCGGATCAGGCGAAATCCACACCAAGGTCCTGCACCT
ATACCTACCTCTTCAATGTCTCTGAAAAGGGACCGGCAGCCCTGAAAGATGTCCGCGTGCGGCAGGCTCTGTCCTACGCC
ATCAACCGCGATGTGATCGTCAACAACATTCTCCAGGGCGGCCAGAAACCGGCTTATAACTGGGTGCATTGGGCCACCGC
TGGTTTCAAGATGCCGGATATTGCTGCCGCGCATATGACCCAGAAAGAGCGGGACGACAAAGCGGTCGCGCTTCTGAAAG
AAGCTGGCTATAGCCCTGACCATCCGCTCAACCTGACACTGAGCTACAACACGGATGAAGGCCACAAGAAGATTGCCATT
GCCGTATCACAGTTCTGGAAGAAAGTTGGCGTCAACCTCACCTTGACCAATATGGAATGGAAGGTTCTGACCGATAAGCT
GAACCATCAGGATTTTGAAGTGTCGCGCTATGCATGGTGCGGTGATTACAATGAGGCTTCGACCTATCTGGATGTCTTCA
CATCCGCCTCCGGCAACAACTATGTCAAATATTCCAATCCGGCCTATGACAAGCTGTTGAAAGAAGCAAAGACCGCAGCC
GATCCGCAGCCGCTTTACACCAAGGCCGAGGAAATTCTGGCGGTAGATGCGCCCCATGCGCCGATCTATCAATATTCCAA
CGTGATGATGCTGAAGCCGGATGTTCGGGGTTACCCTGAAAAAAGCGTGATGGGCAACTGGTACGCCAAAGACATGTACC
GCGTGGCCAAATAA

Upstream 100 bases:

>100_bases
AAACGTACTATAAATCGAATGAAAACAATCGTGTGAAAGGCAAGTCCATATATTTCTGCTCTGCCTTGCCTTCATCGACA
AACAAAAAAGGGGAACAAAA

Downstream 100 bases:

>100_bases
TGCTGTAAAGGGCAGCACACCATGTGCTGCCCCTCTTACCGGGGCGATCCAGAATGTTAGTTTACGTGTTAAGGCGTCTG
GCGGTTGCCATACCGACGCT

Product: ABC transporter substrate binding protein (oligopeptide)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 537; Mature: 537

Protein sequence:

>537_residues
MRKLLLLTTCLAFSFSSLSYADAGTKNGEKLAANQTYTYRVLDSFKTLDPQLNADTDGSDALRNLFETLMNEDTQGNLVP
GAASSYDVSSDKMLYTFHLRPEAKWSDGTPVTAGDFVYAWQRLADPKTASEYASYLEMMQVENTTDIIGGKKPPQELGVK
AVDDHTFQVKLIAPIPYFVKMTVNASMSPVKKSVIDKFGDDWTKPGNLVGNGAYVLTEHVPGEKLVMKRNPNYWNNANTV
LDTVTALIINDGNQAMTRYLAGELDEVGIPTGQYPRMKKDYPDQAKSTPRSCTYTYLFNVSEKGPAALKDVRVRQALSYA
INRDVIVNNILQGGQKPAYNWVHWATAGFKMPDIAAAHMTQKERDDKAVALLKEAGYSPDHPLNLTLSYNTDEGHKKIAI
AVSQFWKKVGVNLTLTNMEWKVLTDKLNHQDFEVSRYAWCGDYNEASTYLDVFTSASGNNYVKYSNPAYDKLLKEAKTAA
DPQPLYTKAEEILAVDAPHAPIYQYSNVMMLKPDVRGYPEKSVMGNWYAKDMYRVAK

Sequences:

>Translated_537_residues
MRKLLLLTTCLAFSFSSLSYADAGTKNGEKLAANQTYTYRVLDSFKTLDPQLNADTDGSDALRNLFETLMNEDTQGNLVP
GAASSYDVSSDKMLYTFHLRPEAKWSDGTPVTAGDFVYAWQRLADPKTASEYASYLEMMQVENTTDIIGGKKPPQELGVK
AVDDHTFQVKLIAPIPYFVKMTVNASMSPVKKSVIDKFGDDWTKPGNLVGNGAYVLTEHVPGEKLVMKRNPNYWNNANTV
LDTVTALIINDGNQAMTRYLAGELDEVGIPTGQYPRMKKDYPDQAKSTPRSCTYTYLFNVSEKGPAALKDVRVRQALSYA
INRDVIVNNILQGGQKPAYNWVHWATAGFKMPDIAAAHMTQKERDDKAVALLKEAGYSPDHPLNLTLSYNTDEGHKKIAI
AVSQFWKKVGVNLTLTNMEWKVLTDKLNHQDFEVSRYAWCGDYNEASTYLDVFTSASGNNYVKYSNPAYDKLLKEAKTAA
DPQPLYTKAEEILAVDAPHAPIYQYSNVMMLKPDVRGYPEKSVMGNWYAKDMYRVAK
>Mature_537_residues
MRKLLLLTTCLAFSFSSLSYADAGTKNGEKLAANQTYTYRVLDSFKTLDPQLNADTDGSDALRNLFETLMNEDTQGNLVP
GAASSYDVSSDKMLYTFHLRPEAKWSDGTPVTAGDFVYAWQRLADPKTASEYASYLEMMQVENTTDIIGGKKPPQELGVK
AVDDHTFQVKLIAPIPYFVKMTVNASMSPVKKSVIDKFGDDWTKPGNLVGNGAYVLTEHVPGEKLVMKRNPNYWNNANTV
LDTVTALIINDGNQAMTRYLAGELDEVGIPTGQYPRMKKDYPDQAKSTPRSCTYTYLFNVSEKGPAALKDVRVRQALSYA
INRDVIVNNILQGGQKPAYNWVHWATAGFKMPDIAAAHMTQKERDDKAVALLKEAGYSPDHPLNLTLSYNTDEGHKKIAI
AVSQFWKKVGVNLTLTNMEWKVLTDKLNHQDFEVSRYAWCGDYNEASTYLDVFTSASGNNYVKYSNPAYDKLLKEAKTAA
DPQPLYTKAEEILAVDAPHAPIYQYSNVMMLKPDVRGYPEKSVMGNWYAKDMYRVAK

Specific function: This protein is a component of the oligopeptide permease, a binding protein-dependent transport system, it binds peptides up to five amino acids long with high affinity [H]

COG id: COG4166

COG function: function code E; ABC-type oligopeptide transport system, periplasmic component

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI87081878, Length=541, Percent_Identity=45.1016635859519, Blast_Score=434, Evalue=1e-123,
Organism=Escherichia coli, GI1787495, Length=514, Percent_Identity=44.1634241245136, Blast_Score=423, Evalue=1e-119,
Organism=Escherichia coli, GI1789397, Length=536, Percent_Identity=38.0597014925373, Blast_Score=334, Evalue=1e-92,
Organism=Escherichia coli, GI1789966, Length=470, Percent_Identity=25.531914893617, Blast_Score=116, Evalue=3e-27,
Organism=Escherichia coli, GI1787762, Length=490, Percent_Identity=24.2857142857143, Blast_Score=108, Evalue=7e-25,
Organism=Escherichia coli, GI1787052, Length=480, Percent_Identity=25.625, Blast_Score=97, Evalue=3e-21,
Organism=Escherichia coli, GI1789887, Length=483, Percent_Identity=21.9461697722567, Blast_Score=73, Evalue=6e-14,
Organism=Escherichia coli, GI1787551, Length=552, Percent_Identity=21.9202898550725, Blast_Score=72, Evalue=6e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 60037; Mature: 60037

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKLLLLTTCLAFSFSSLSYADAGTKNGEKLAANQTYTYRVLDSFKTLDPQLNADTDGSD
CCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCEEEEEHHHHHHCCCCCCCCCCHHH
ALRNLFETLMNEDTQGNLVPGAASSYDVSSDKMLYTFHLRPEAKWSDGTPVTAGDFVYAW
HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHH
QRLADPKTASEYASYLEMMQVENTTDIIGGKKPPQELGVKAVDDHTFQVKLIAPIPYFVK
HHHCCCCCHHHHHHHHHHHHHCCCHHHCCCCCCHHHHCCEEECCCEEEEEEEECCCEEEE
MTVNASMSPVKKSVIDKFGDDWTKPGNLVGNGAYVLTEHVPGEKLVMKRNPNYWNNANTV
EEECCCCHHHHHHHHHHHCCCCCCCCCEECCCEEEEEECCCCCEEEEECCCCCCCCCHHH
LDTVTALIINDGNQAMTRYLAGELDEVGIPTGQYPRMKKDYPDQAKSTPRSCTYTYLFNV
HHHEEEEEEECCHHHHHHHHHCCHHHCCCCCCCCCCCCCCCCCHHHCCCCCEEEEEEEEE
SEKGPAALKDVRVRQALSYAINRDVIVNNILQGGQKPAYNWVHWATAGFKMPDIAAAHMT
CCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHH
QKERDDKAVALLKEAGYSPDHPLNLTLSYNTDEGHKKIAIAVSQFWKKVGVNLTLTNMEW
HHHCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCEEEHHHHHHHHHHCCEEEEECCEE
KVLTDKLNHQDFEVSRYAWCGDYNEASTYLDVFTSASGNNYVKYSNPAYDKLLKEAKTAA
EEEHHHCCCCCCEEEEEEEECCCCCHHHHHHHEECCCCCCEEEECCCHHHHHHHHHHHCC
DPQPLYTKAEEILAVDAPHAPIYQYSNVMMLKPDVRGYPEKSVMGNWYAKDMYRVAK
CCCCHHHCHHHEEEECCCCCCCEECCCEEEECCCCCCCCCHHHCCCHHHHHHHHHCC
>Mature Secondary Structure
MRKLLLLTTCLAFSFSSLSYADAGTKNGEKLAANQTYTYRVLDSFKTLDPQLNADTDGSD
CCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCEEEEEHHHHHHCCCCCCCCCCHHH
ALRNLFETLMNEDTQGNLVPGAASSYDVSSDKMLYTFHLRPEAKWSDGTPVTAGDFVYAW
HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCHHHHHH
QRLADPKTASEYASYLEMMQVENTTDIIGGKKPPQELGVKAVDDHTFQVKLIAPIPYFVK
HHHCCCCCHHHHHHHHHHHHHCCCHHHCCCCCCHHHHCCEEECCCEEEEEEEECCCEEEE
MTVNASMSPVKKSVIDKFGDDWTKPGNLVGNGAYVLTEHVPGEKLVMKRNPNYWNNANTV
EEECCCCHHHHHHHHHHHCCCCCCCCCEECCCEEEEEECCCCCEEEEECCCCCCCCCHHH
LDTVTALIINDGNQAMTRYLAGELDEVGIPTGQYPRMKKDYPDQAKSTPRSCTYTYLFNV
HHHEEEEEEECCHHHHHHHHHCCHHHCCCCCCCCCCCCCCCCCHHHCCCCCEEEEEEEEE
SEKGPAALKDVRVRQALSYAINRDVIVNNILQGGQKPAYNWVHWATAGFKMPDIAAAHMT
CCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHH
QKERDDKAVALLKEAGYSPDHPLNLTLSYNTDEGHKKIAIAVSQFWKKVGVNLTLTNMEW
HHHCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCEEEHHHHHHHHHHCCEEEEECCEE
KVLTDKLNHQDFEVSRYAWCGDYNEASTYLDVFTSASGNNYVKYSNPAYDKLLKEAKTAA
EEEHHHCCCCCCEEEEEEEECCCCCHHHHHHHEECCCCCCEEEECCCHHHHHHHHHHHCC
DPQPLYTKAEEILAVDAPHAPIYQYSNVMMLKPDVRGYPEKSVMGNWYAKDMYRVAK
CCCCHHHCHHHEEEECCCCCCCEECCCEEEECCCCCCCCCHHHCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2821267; 3525163; 11677609; 8202710; 8747465; 10422831; 10438628 [H]