| Definition | Agrobacterium vitis S4 plasmid pAtS4e, complete sequence. |
|---|---|
| Accession | NC_011981 |
| Length | 631,775 |
Click here to switch to the map view.
The map label for this gene is 222102416
Identifier: 222102416
GI number: 222102416
Start: 4003
End: 5256
Strand: Reverse
Name: 222102416
Synonym: Avi_7004
Alternate gene names: NA
Gene position: 5256-4003 (Counterclockwise)
Preceding gene: 222102418
Following gene: NA
Centisome position: 0.83
GC content: 55.74
Gene sequence:
>1254_bases ATGCCTGTCGAAAAAATACATGCACTCGTCGTCGGCGGTGGCCAGGCGGGCATCGCGATGAGTGAGCATCTGACCAGGAA CAATGTGGCACACCTTGTCCTTGAAAAAGGAAGGATAGCAGAGCGCTGGCGTTCCATGCGTTGGGATTCTCTGGTCGCCA ATGGTCCGGCTTGGCACGATCGTTTTCCAAACCTGACCTTTCCCGGCAATGCCGATGCGTTTGTTCCCAAAGAAGGCGTT GCTGACTATTTTGAGACCTATGCAAAAAAGTACAACGCACCAATACGCAGTGGAACCGAGGTAACTCACGTCGAGCGTCT AGGCGGTCGCCCGGGTTTCCGTGTGGAGACAGCTAACGGAGTGATCGAAGCACGCTACGTCGTTGTGGCGACCGGTCCGT TCCAGTTGCCGAATATCCCGCCAATCGTTCCGCCGACCGCCAATATCAACCAGATACATTCCAGCGAATACCGCAATCCT CACCAGCTCGGGGAGGGGGCCGTTCTCGTGATTGGCGCTGGCTCGTCGGGAGTGCAGATTGCGGAGGAACTCATGCGAGT GGGCCGCAAAACTTATCTTTCGGTTGGTCCGCATGATCGTCCTCCACGCACCTATCGCGGGTATGACTGCGCCTGGTGGC TTGGTGTTCTCGGCAAATGGGATGCCCAGGTGCAGGAATTGCAGACAAGCAACCATGTTACGGTCGCTGTCAGTGGTGCG CGAGGCGGAGAAACTATCGACTTCCGTCGGCTTGCAGCACAAGGAATGGTTCTGGTTGGCATGACCGAAAATTTTAAGAA CGGCAAATTATCCTTCGCTGAAGACCTTGCCAACAATCTCGATCGTGGTGACCAGACCTATCTATCACTGCTCGACGAGG CGGATGCTTTCGTTGCATTGAACGGTCTCAACCTTCCGCAAGAGCCGGAAGCCCGCATTCTTGGTCCAACGGCCGATTGT ATTACTAATCCGATTCTCGAACTGGATCTTACCGCGGCAGGCATCACCACCATCATCTGGGCCACCGGTTTCAGGTCCGA CTATAGCTGGTTGAAAGTGAAGGCCTTCGACGAAGCGGGGCGCCCTAGACATCATCGAGGCGTCTCTTCTGAGAGAGGCC TCTACTTCCTCGGTCTTCCCGGACTTTCCGGGCGCGCCTCGAGTTTCATCTGGGGCGTCTGGCATGATGCCAAGCACTTG GCCGATCACATCACCATTCAGGATAACTACCTGGGGTGTATGCCGCAGGCCTGA
Upstream 100 bases:
>100_bases CACAGCAATAAAAATTCTCGTTGGCCCTGCCCCTATTCTTCGGCTTTCGGCAACACCCCAGGGGCCAGCACACACTTCAA TTTATAGAAAGGACGAAACA
Downstream 100 bases:
>100_bases TCTTATTTTGACGTCTTACCCGGCCGCCAGAATAGTGGTGTGGATGTATCCGGATTAGAGATACCGCAAACAATCTGCAC TCTTTTTCTATTATGATGAT
Product: Flavin-containing monooxygenase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 417; Mature: 416
Protein sequence:
>417_residues MPVEKIHALVVGGGQAGIAMSEHLTRNNVAHLVLEKGRIAERWRSMRWDSLVANGPAWHDRFPNLTFPGNADAFVPKEGV ADYFETYAKKYNAPIRSGTEVTHVERLGGRPGFRVETANGVIEARYVVVATGPFQLPNIPPIVPPTANINQIHSSEYRNP HQLGEGAVLVIGAGSSGVQIAEELMRVGRKTYLSVGPHDRPPRTYRGYDCAWWLGVLGKWDAQVQELQTSNHVTVAVSGA RGGETIDFRRLAAQGMVLVGMTENFKNGKLSFAEDLANNLDRGDQTYLSLLDEADAFVALNGLNLPQEPEARILGPTADC ITNPILELDLTAAGITTIIWATGFRSDYSWLKVKAFDEAGRPRHHRGVSSERGLYFLGLPGLSGRASSFIWGVWHDAKHL ADHITIQDNYLGCMPQA
Sequences:
>Translated_417_residues MPVEKIHALVVGGGQAGIAMSEHLTRNNVAHLVLEKGRIAERWRSMRWDSLVANGPAWHDRFPNLTFPGNADAFVPKEGV ADYFETYAKKYNAPIRSGTEVTHVERLGGRPGFRVETANGVIEARYVVVATGPFQLPNIPPIVPPTANINQIHSSEYRNP HQLGEGAVLVIGAGSSGVQIAEELMRVGRKTYLSVGPHDRPPRTYRGYDCAWWLGVLGKWDAQVQELQTSNHVTVAVSGA RGGETIDFRRLAAQGMVLVGMTENFKNGKLSFAEDLANNLDRGDQTYLSLLDEADAFVALNGLNLPQEPEARILGPTADC ITNPILELDLTAAGITTIIWATGFRSDYSWLKVKAFDEAGRPRHHRGVSSERGLYFLGLPGLSGRASSFIWGVWHDAKHL ADHITIQDNYLGCMPQA >Mature_416_residues PVEKIHALVVGGGQAGIAMSEHLTRNNVAHLVLEKGRIAERWRSMRWDSLVANGPAWHDRFPNLTFPGNADAFVPKEGVA DYFETYAKKYNAPIRSGTEVTHVERLGGRPGFRVETANGVIEARYVVVATGPFQLPNIPPIVPPTANINQIHSSEYRNPH QLGEGAVLVIGAGSSGVQIAEELMRVGRKTYLSVGPHDRPPRTYRGYDCAWWLGVLGKWDAQVQELQTSNHVTVAVSGAR GGETIDFRRLAAQGMVLVGMTENFKNGKLSFAEDLANNLDRGDQTYLSLLDEADAFVALNGLNLPQEPEARILGPTADCI TNPILELDLTAAGITTIIWATGFRSDYSWLKVKAFDEAGRPRHHRGVSSERGLYFLGLPGLSGRASSFIWGVWHDAKHLA DHITIQDNYLGCMPQA
Specific function: Unknown
COG id: COG2072
COG function: function code P; Predicted flavoprotein involved in K+ transport
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013027 - InterPro: IPR000103 [H]
Pfam domain/function: PF07992 Pyr_redox_2 [H]
EC number: NA
Molecular weight: Translated: 45706; Mature: 45575
Theoretical pI: Translated: 6.89; Mature: 6.89
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPVEKIHALVVGGGQAGIAMSEHLTRNNVAHLVLEKGRIAERWRSMRWDSLVANGPAWHD CCHHHEEEEEEECCCCCCHHHHHHHHCCCEEEEECCCHHHHHHHHCCHHHHHCCCCCHHC RFPNLTFPGNADAFVPKEGVADYFETYAKKYNAPIRSGTEVTHVERLGGRPGFRVETANG CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCEEEECCCC VIEARYVVVATGPFQLPNIPPIVPPTANINQIHSSEYRNPHQLGEGAVLVIGAGSSGVQI EEEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHCCCCEEEEEECCCCCHHH AEELMRVGRKTYLSVGPHDRPPRTYRGYDCAWWLGVLGKWDAQVQELQTSNHVTVAVSGA HHHHHHCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHCCCCCEEEEEECC RGGETIDFRRLAAQGMVLVGMTENFKNGKLSFAEDLANNLDRGDQTYLSLLDEADAFVAL CCCCCHHHHHHHHCCEEEEEECCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHCCCEEEEE NGLNLPQEPEARILGPTADCITNPILELDLTAAGITTIIWATGFRSDYSWLKVKAFDEAG ECCCCCCCCCCEEECCCHHHHCCCCEEEEECHHHHEEEEEECCCCCCCCEEEEEEECCCC RPRHHRGVSSERGLYFLGLPGLSGRASSFIWGVWHDAKHLADHITIQDNYLGCMPQA CCHHHCCCCCCCCEEEEECCCCCCCCCCEEEEEHHHHHHHHHEEEEECCCCCCCCCC >Mature Secondary Structure PVEKIHALVVGGGQAGIAMSEHLTRNNVAHLVLEKGRIAERWRSMRWDSLVANGPAWHD CHHHEEEEEEECCCCCCHHHHHHHHCCCEEEEECCCHHHHHHHHCCHHHHHCCCCCHHC RFPNLTFPGNADAFVPKEGVADYFETYAKKYNAPIRSGTEVTHVERLGGRPGFRVETANG CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCEEEECCCC VIEARYVVVATGPFQLPNIPPIVPPTANINQIHSSEYRNPHQLGEGAVLVIGAGSSGVQI EEEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHCCCCEEEEEECCCCCHHH AEELMRVGRKTYLSVGPHDRPPRTYRGYDCAWWLGVLGKWDAQVQELQTSNHVTVAVSGA HHHHHHCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHCCCCCEEEEEECC RGGETIDFRRLAAQGMVLVGMTENFKNGKLSFAEDLANNLDRGDQTYLSLLDEADAFVAL CCCCCHHHHHHHHCCEEEEEECCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHCCCEEEEE NGLNLPQEPEARILGPTADCITNPILELDLTAAGITTIIWATGFRSDYSWLKVKAFDEAG ECCCCCCCCCCEEECCCHHHHCCCCEEEEECHHHHEEEEEECCCCCCCCEEEEEEECCCC RPRHHRGVSSERGLYFLGLPGLSGRASSFIWGVWHDAKHLADHITIQDNYLGCMPQA CCHHHCCCCCCCCEEEEECCCCCCCCCCEEEEEHHHHHHHHHEEEEECCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA