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The map label for this gene is rbgA [H]

Identifier: 222097283

GI number: 222097283

Start: 3586590

End: 3587480

Strand: Reverse

Name: rbgA [H]

Synonym: BCQ_3623

Alternate gene names: 222097283

Gene position: 3587480-3586590 (Counterclockwise)

Preceding gene: 222097284

Following gene: 222097282

Centisome position: 68.8

GC content: 38.5

Gene sequence:

>891_bases
ATGGTAATTCAATGGTTCCCGGGACATATGGCAAAGGCTAGACGCCAAGTAACAGAAAAATTAAAGTTAATTGATGTTGT
AATTGAGCTTGTAGATGCTCGATTACCTTTATCTTCTCGAAATCCGATGATCGATGAGATTATTACACATAAACCGAGGC
TTGTTGTTTTAAATAAAGCGGATATGGCAGACGATCGTTTAACAAAGCAATGGATCGCATATTTTAAAGAAAAAGGCCAT
ATGGCAATTTCAATTAACGCACAGGCTGGACAAGGCATGAAGGAAATTGCGGCGGCTTGTAAAGTGTTAGTGAAAGAGAA
ATTCGATAAAATGGTTGCAAAAGGTATTAGACCGAGAGCGATTCGTGCATTAATTGTAGGGATACCGAATGTTGGTAAAT
CTACGTTGATTAATAAGTTAGCGAAGAAAAATATTGCTAAAACAGGGGATCGTCCTGGTGTGACAACAGCTCAGCAATGG
ATTAAGGTTGGGAAAGAAATGGAGCTGTTAGATACGCCAGGTATTTTATGGCCTAAATTTGAAGACCAATTAGTTGGGTT
ACGTCTAGCTACGACTGGTGCAATTAAAGATTCTATTTTAAATCTACAAGACGTAGCTGTTTATGCGCTACGTTTTATGG
AGAAACATTACCCAGAGCGATTAAAAGAGCGCTATAATTTAAATGACATTCCAGAAGACATCGTGGAGTTATTTGATGCG
ATTGGAAAAAATAGAGGCTGTTTAATGGGCGGCGGAATGATTGATTATGATAAAACATCTGAACTTATACTTCGTGAGCT
TCGTGGTGGCAAACTTGGGAAAATGACGTTTGAAACACCAGAAGAGTTTGCGGAGCAGACAGAAGATGCAGAAAAAGTAG
AAGAAGTATAA

Upstream 100 bases:

>100_bases
GTACAATTTCAATGGACCAAGTGATTGGAAAGGCAAATATACTATATTGGCCGTTAAAAGATGCTCGTATTGTGAAATAA
AAGAAAAAGAAGGTGGCAAC

Downstream 100 bases:

>100_bases
GACGTGCGTTTGTACGTCTTTTCTTTTTTTGTATATAAAGGGAGTGGCATGAATGCAAAAAGTGACTATTCAAGAGGCGG
AACATCTACTACAAGAAATT

Product: ribosomal biogenesis gtpase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 296; Mature: 296

Protein sequence:

>296_residues
MVIQWFPGHMAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITHKPRLVVLNKADMADDRLTKQWIAYFKEKGH
MAISINAQAGQGMKEIAAACKVLVKEKFDKMVAKGIRPRAIRALIVGIPNVGKSTLINKLAKKNIAKTGDRPGVTTAQQW
IKVGKEMELLDTPGILWPKFEDQLVGLRLATTGAIKDSILNLQDVAVYALRFMEKHYPERLKERYNLNDIPEDIVELFDA
IGKNRGCLMGGGMIDYDKTSELILRELRGGKLGKMTFETPEEFAEQTEDAEKVEEV

Sequences:

>Translated_296_residues
MVIQWFPGHMAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITHKPRLVVLNKADMADDRLTKQWIAYFKEKGH
MAISINAQAGQGMKEIAAACKVLVKEKFDKMVAKGIRPRAIRALIVGIPNVGKSTLINKLAKKNIAKTGDRPGVTTAQQW
IKVGKEMELLDTPGILWPKFEDQLVGLRLATTGAIKDSILNLQDVAVYALRFMEKHYPERLKERYNLNDIPEDIVELFDA
IGKNRGCLMGGGMIDYDKTSELILRELRGGKLGKMTFETPEEFAEQTEDAEKVEEV
>Mature_296_residues
MVIQWFPGHMAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITHKPRLVVLNKADMADDRLTKQWIAYFKEKGH
MAISINAQAGQGMKEIAAACKVLVKEKFDKMVAKGIRPRAIRALIVGIPNVGKSTLINKLAKKNIAKTGDRPGVTTAQQW
IKVGKEMELLDTPGILWPKFEDQLVGLRLATTGAIKDSILNLQDVAVYALRFMEKHYPERLKERYNLNDIPEDIVELFDA
IGKNRGCLMGGGMIDYDKTSELILRELRGGKLGKMTFETPEEFAEQTEDAEKVEEV

Specific function: Binds GTP and GDP [H]

COG id: COG1161

COG function: function code R; Predicted GTPases

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]

Homologues:

Organism=Homo sapiens, GI93277113, Length=297, Percent_Identity=31.3131313131313, Blast_Score=141, Evalue=8e-34,
Organism=Homo sapiens, GI45643129, Length=302, Percent_Identity=26.158940397351, Blast_Score=81, Evalue=1e-15,
Organism=Homo sapiens, GI45643127, Length=302, Percent_Identity=26.158940397351, Blast_Score=81, Evalue=1e-15,
Organism=Homo sapiens, GI45593130, Length=302, Percent_Identity=26.158940397351, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI7019419, Length=252, Percent_Identity=24.6031746031746, Blast_Score=79, Evalue=6e-15,
Organism=Homo sapiens, GI296317324, Length=175, Percent_Identity=28.5714285714286, Blast_Score=72, Evalue=9e-13,
Organism=Homo sapiens, GI9506611, Length=175, Percent_Identity=28.5714285714286, Blast_Score=72, Evalue=9e-13,
Organism=Caenorhabditis elegans, GI193211047, Length=235, Percent_Identity=30.6382978723404, Blast_Score=98, Evalue=4e-21,
Organism=Caenorhabditis elegans, GI32563985, Length=249, Percent_Identity=29.718875502008, Blast_Score=92, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI71990926, Length=249, Percent_Identity=29.718875502008, Blast_Score=92, Evalue=4e-19,
Organism=Caenorhabditis elegans, GI32563983, Length=249, Percent_Identity=29.718875502008, Blast_Score=92, Evalue=4e-19,
Organism=Caenorhabditis elegans, GI17534827, Length=289, Percent_Identity=26.643598615917, Blast_Score=89, Evalue=4e-18,
Organism=Caenorhabditis elegans, GI25143545, Length=277, Percent_Identity=25.2707581227437, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI115535155, Length=277, Percent_Identity=25.2707581227437, Blast_Score=72, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI71982363, Length=179, Percent_Identity=28.4916201117318, Blast_Score=66, Evalue=3e-11,
Organism=Saccharomyces cerevisiae, GI6323744, Length=237, Percent_Identity=32.4894514767932, Blast_Score=86, Evalue=5e-18,
Organism=Saccharomyces cerevisiae, GI6324381, Length=270, Percent_Identity=26.2962962962963, Blast_Score=85, Evalue=2e-17,
Organism=Saccharomyces cerevisiae, GI6320842, Length=276, Percent_Identity=25, Blast_Score=79, Evalue=6e-16,
Organism=Drosophila melanogaster, GI85815858, Length=310, Percent_Identity=30.3225806451613, Blast_Score=128, Evalue=4e-30,
Organism=Drosophila melanogaster, GI19922460, Length=278, Percent_Identity=26.978417266187, Blast_Score=89, Evalue=3e-18,
Organism=Drosophila melanogaster, GI28572990, Length=280, Percent_Identity=29.2857142857143, Blast_Score=86, Evalue=3e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023179
- InterPro:   IPR019991
- InterPro:   IPR016478
- InterPro:   IPR002917 [H]

Pfam domain/function: PF01926 MMR_HSR1 [H]

EC number: NA

Molecular weight: Translated: 33351; Mature: 33351

Theoretical pI: Translated: 9.47; Mature: 9.47

Prosite motif: PS00589 PTS_HPR_SER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVIQWFPGHMAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITHKPRLVVLNKA
CEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCEEEEECC
DMADDRLTKQWIAYFKEKGHMAISINAQAGQGMKEIAAACKVLVKEKFDKMVAKGIRPRA
CCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHH
IRALIVGIPNVGKSTLINKLAKKNIAKTGDRPGVTTAQQWIKVGKEMELLDTPGILWPKF
HHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHCCCCCCCCCC
EDQLVGLRLATTGAIKDSILNLQDVAVYALRFMEKHYPERLKERYNLNDIPEDIVELFDA
HHHHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
IGKNRGCLMGGGMIDYDKTSELILRELRGGKLGKMTFETPEEFAEQTEDAEKVEEV
HCCCCCEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MVIQWFPGHMAKARRQVTEKLKLIDVVIELVDARLPLSSRNPMIDEIITHKPRLVVLNKA
CEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCEEEEECC
DMADDRLTKQWIAYFKEKGHMAISINAQAGQGMKEIAAACKVLVKEKFDKMVAKGIRPRA
CCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHH
IRALIVGIPNVGKSTLINKLAKKNIAKTGDRPGVTTAQQWIKVGKEMELLDTPGILWPKF
HHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHCCCCCCCCCC
EDQLVGLRLATTGAIKDSILNLQDVAVYALRFMEKHYPERLKERYNLNDIPEDIVELFDA
HHHHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
IGKNRGCLMGGGMIDYDKTSELILRELRGGKLGKMTFETPEEFAEQTEDAEKVEEV
HCCCCCEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]