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The map label for this gene is nrdD [H]

Identifier: 222097056

GI number: 222097056

Start: 3346621

End: 3348477

Strand: Reverse

Name: nrdD [H]

Synonym: BCQ_3396

Alternate gene names: 222097056

Gene position: 3348477-3346621 (Counterclockwise)

Preceding gene: 222097060

Following gene: 222097055

Centisome position: 64.22

GC content: 37.53

Gene sequence:

>1857_bases
ATGTTACAAAAAAATACACGTGGAGAAGAATTAATGAGAGTATTTGAGACAATAGTCCACGGCAATGAACAAGATTTAAT
GCAAGAAAATGCAAATGTAGACGGCCGCTCTCCGATGGGAGTAATGGGAACGTTCGCATCTGAGAGTGCGAAATATTACG
CTGTTGAAAATTTATTGTCAGATTCAGTGAAAAAAGCGATAAATGAAAATATATTATATCCGCATGACTTAGATTTTTAT
GCGACTGGAACGACAACTTGTTCGCAAATTCCGTTAGCGCAAATGCTTGCGAACGGTTTTCATACCGGACATGGACATAT
GAGACAACCGCAAGACATTAAAAGTGCATTAGCTCTTTCATCTATTATTTTTCAAGCGAATCAAAATATGCAGCACGGTG
GTCAATCGTTTGCACTCTTTGATGTTGATTTAGCTCCATATGTGAGAAAAACAGTAGAGAGACATAAGAAACGATTACAG
TCATATCCGCTTACGAAAGAACAAATAGAAGAATTTGCGTGGAAAGAAACAGAAAATGATACGTATCAGGCGTGTGAAGC
TTTTATTCATAATTCAAATAGTATGCATAGTAGGGGCGGGGGACAAGTACCGTTTATTTCTATTAATTATGGAACAGACA
CATCGAAAGAAGGAAGACTTTTAATTAAACAACTTTTAAAAGCGACACAAGCTGGTCTTGGTAAAGGGGAAACACCAATT
TTTCCTATTCAAATTTTTAAAATGAAAAAAGGTGTGAATTTTGAAGAAAGTGATCCGAACTATGATTTATTTGAATTAGC
GTTAGAGACAACGGCTGAACGATTATTCCCTAACTTTTCATTTTTAGATGCGCCATTTAATGCTGTGCATTATGATGGAA
GACCGGAAAGTGAAGTATGTTACATGGGATGTCGTACTCGTGTTATGTCTAACATACATGGAGAAGAAACGGCGATTGGA
AGAGGGAATTTATCATTTACGTCCATTAACTTAGTGAAATTAGCACTCATTAGTGGTTCACAAGAAGCGTTTTTTGAAGC
GTTAAATTATTACTTAGATGTAGGAATCCAGCAATTATTAGAGAGATTTGAGTATCAATGTACGAAACGAGCAAGAGATT
TTCGATTTTTATATTCACAAGGTGTATGGCGCGGTGGAGAAAAGTTACAGCCTGAAGATTCTGTAGCATCGATTTTAAAG
CAAGGGACGTTAAGTCTTGGTTTTATCGGTCTTGCGGAGTGTTTAGTAGCTTTAACAGGAAAGCATCACGGAGAAGATGA
AGAATCATGGAAACTCGGATATGAAATTATTTCCTTTATGAGAGATAGAATGGATAAAGCGACAGAAGAACATGAACTGA
ATTTCTCAGTCATTGCAACTCCTGCAGAAGGGTTATCAGGGAAGTTTGTGAAAAAGGATAGGGAAGAATTTGGCGCGATT
AGCGGTATAACTAATCATAATTACTATACGAATTCATTCCATATTCCAGTTTATTATAACATGCAAGCGATAAATAAAAT
TCGTTTAGAAGGCCCGTTCCACGCTCTATGTAACGGGGGACATATTACGTATATTGAACTAGATGGAGCAGCAATGCATA
ACAAGAAGGCATTAAAACAAATTGTACAAGCGATGGCAGAGAATGGCGTTGGATACGGTTCAATTAATCACCCTGTTGAC
CGTTGTAAGTGCTGTAGTTATCACGGAGTTATTGGAAATGAATGTCCGAGCTGCGGAAATGAAGATGAGGCTAACATAGA
AAGAATTCGCCGTATAACAGGTTATCTTGTAGGAGATATGTCGAAGTGGAATAGTGCGAAACGTAGTGAAGAGATGGATC
GGGTGAAGCATAAATGA

Upstream 100 bases:

>100_bases
AAAAATTTCACAGGAATGTTACATTTCTCACAGAAACACTAAGACTATATGTAGTAACATTTTAATCAAAAGACAACAAC
ATATTGGTGGAGGGTTATAA

Downstream 100 bases:

>100_bases
AAGTGATGAACATCATTCATGATAGTGTAGTAGATGGAGAAGGGTTGCGGACAGTCGTGTTTTTTGCGGGCTGTCCGCAT
CGTTGTTTCGGTTGCCATAA

Product: anaerobic ribonucleoside triphosphate reductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 618; Mature: 618

Protein sequence:

>618_residues
MLQKNTRGEELMRVFETIVHGNEQDLMQENANVDGRSPMGVMGTFASESAKYYAVENLLSDSVKKAINENILYPHDLDFY
ATGTTTCSQIPLAQMLANGFHTGHGHMRQPQDIKSALALSSIIFQANQNMQHGGQSFALFDVDLAPYVRKTVERHKKRLQ
SYPLTKEQIEEFAWKETENDTYQACEAFIHNSNSMHSRGGGQVPFISINYGTDTSKEGRLLIKQLLKATQAGLGKGETPI
FPIQIFKMKKGVNFEESDPNYDLFELALETTAERLFPNFSFLDAPFNAVHYDGRPESEVCYMGCRTRVMSNIHGEETAIG
RGNLSFTSINLVKLALISGSQEAFFEALNYYLDVGIQQLLERFEYQCTKRARDFRFLYSQGVWRGGEKLQPEDSVASILK
QGTLSLGFIGLAECLVALTGKHHGEDEESWKLGYEIISFMRDRMDKATEEHELNFSVIATPAEGLSGKFVKKDREEFGAI
SGITNHNYYTNSFHIPVYYNMQAINKIRLEGPFHALCNGGHITYIELDGAAMHNKKALKQIVQAMAENGVGYGSINHPVD
RCKCCSYHGVIGNECPSCGNEDEANIERIRRITGYLVGDMSKWNSAKRSEEMDRVKHK

Sequences:

>Translated_618_residues
MLQKNTRGEELMRVFETIVHGNEQDLMQENANVDGRSPMGVMGTFASESAKYYAVENLLSDSVKKAINENILYPHDLDFY
ATGTTTCSQIPLAQMLANGFHTGHGHMRQPQDIKSALALSSIIFQANQNMQHGGQSFALFDVDLAPYVRKTVERHKKRLQ
SYPLTKEQIEEFAWKETENDTYQACEAFIHNSNSMHSRGGGQVPFISINYGTDTSKEGRLLIKQLLKATQAGLGKGETPI
FPIQIFKMKKGVNFEESDPNYDLFELALETTAERLFPNFSFLDAPFNAVHYDGRPESEVCYMGCRTRVMSNIHGEETAIG
RGNLSFTSINLVKLALISGSQEAFFEALNYYLDVGIQQLLERFEYQCTKRARDFRFLYSQGVWRGGEKLQPEDSVASILK
QGTLSLGFIGLAECLVALTGKHHGEDEESWKLGYEIISFMRDRMDKATEEHELNFSVIATPAEGLSGKFVKKDREEFGAI
SGITNHNYYTNSFHIPVYYNMQAINKIRLEGPFHALCNGGHITYIELDGAAMHNKKALKQIVQAMAENGVGYGSINHPVD
RCKCCSYHGVIGNECPSCGNEDEANIERIRRITGYLVGDMSKWNSAKRSEEMDRVKHK
>Mature_618_residues
MLQKNTRGEELMRVFETIVHGNEQDLMQENANVDGRSPMGVMGTFASESAKYYAVENLLSDSVKKAINENILYPHDLDFY
ATGTTTCSQIPLAQMLANGFHTGHGHMRQPQDIKSALALSSIIFQANQNMQHGGQSFALFDVDLAPYVRKTVERHKKRLQ
SYPLTKEQIEEFAWKETENDTYQACEAFIHNSNSMHSRGGGQVPFISINYGTDTSKEGRLLIKQLLKATQAGLGKGETPI
FPIQIFKMKKGVNFEESDPNYDLFELALETTAERLFPNFSFLDAPFNAVHYDGRPESEVCYMGCRTRVMSNIHGEETAIG
RGNLSFTSINLVKLALISGSQEAFFEALNYYLDVGIQQLLERFEYQCTKRARDFRFLYSQGVWRGGEKLQPEDSVASILK
QGTLSLGFIGLAECLVALTGKHHGEDEESWKLGYEIISFMRDRMDKATEEHELNFSVIATPAEGLSGKFVKKDREEFGAI
SGITNHNYYTNSFHIPVYYNMQAINKIRLEGPFHALCNGGHITYIELDGAAMHNKKALKQIVQAMAENGVGYGSINHPVD
RCKCCSYHGVIGNECPSCGNEDEANIERIRRITGYLVGDMSKWNSAKRSEEMDRVKHK

Specific function: Unknown

COG id: COG1328

COG function: function code F; Oxygen-sensitive ribonucleoside-triphosphate reductase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 glycine radical domain [H]

Homologues:

Organism=Escherichia coli, GI1790686, Length=630, Percent_Identity=32.5396825396825, Blast_Score=308, Evalue=5e-85,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005144
- InterPro:   IPR001150
- InterPro:   IPR019777
- InterPro:   IPR012833 [H]

Pfam domain/function: PF03477 ATP-cone; PF01228 Gly_radical [H]

EC number: =1.17.4.2 [H]

Molecular weight: Translated: 69540; Mature: 69540

Theoretical pI: Translated: 6.36; Mature: 6.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLQKNTRGEELMRVFETIVHGNEQDLMQENANVDGRSPMGVMGTFASESAKYYAVENLLS
CCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHH
DSVKKAINENILYPHDLDFYATGTTTCSQIPLAQMLANGFHTGHGHMRQPQDIKSALALS
HHHHHHHHCCCCCCCCCCEEECCCCCHHHCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
SIIFQANQNMQHGGQSFALFDVDLAPYVRKTVERHKKRLQSYPLTKEQIEEFAWKETEND
HHHHHHCCCHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCH
TYQACEAFIHNSNSMHSRGGGQVPFISINYGTDTSKEGRLLIKQLLKATQAGLGKGETPI
HHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCE
FPIQIFKMKKGVNFEESDPNYDLFELALETTAERLFPNFSFLDAPFNAVHYDGRPESEVC
EEHEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEECCCCCEEECCCCCCCHHH
YMGCRTRVMSNIHGEETAIGRGNLSFTSINLVKLALISGSQEAFFEALNYYLDVGIQQLL
HHHHHHHHHHHCCCCCCCCCCCCCEEEEHHEEEEEECCCCHHHHHHHHHHHHHHHHHHHH
ERFEYQCTKRARDFRFLYSQGVWRGGEKLQPEDSVASILKQGTLSLGFIGLAECLVALTG
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHC
KHHGEDEESWKLGYEIISFMRDRMDKATEEHELNFSVIATPAEGLSGKFVKKDREEFGAI
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHCCC
SGITNHNYYTNSFHIPVYYNMQAINKIRLEGPFHALCNGGHITYIELDGAAMHNKKALKQ
CCCCCCCEEECEEEEEEEECHHHHCEEEECCCHHHHCCCCEEEEEEECCCHHHHHHHHHH
IVQAMAENGVGYGSINHPVDRCKCCSYHGVIGNECPSCGNEDEANIERIRRITGYLVGDM
HHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCH
SKWNSAKRSEEMDRVKHK
HHHCHHHHHHHHHHHCCC
>Mature Secondary Structure
MLQKNTRGEELMRVFETIVHGNEQDLMQENANVDGRSPMGVMGTFASESAKYYAVENLLS
CCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHH
DSVKKAINENILYPHDLDFYATGTTTCSQIPLAQMLANGFHTGHGHMRQPQDIKSALALS
HHHHHHHHCCCCCCCCCCEEECCCCCHHHCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
SIIFQANQNMQHGGQSFALFDVDLAPYVRKTVERHKKRLQSYPLTKEQIEEFAWKETEND
HHHHHHCCCHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCH
TYQACEAFIHNSNSMHSRGGGQVPFISINYGTDTSKEGRLLIKQLLKATQAGLGKGETPI
HHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCE
FPIQIFKMKKGVNFEESDPNYDLFELALETTAERLFPNFSFLDAPFNAVHYDGRPESEVC
EEHEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEECCCCCEEECCCCCCCHHH
YMGCRTRVMSNIHGEETAIGRGNLSFTSINLVKLALISGSQEAFFEALNYYLDVGIQQLL
HHHHHHHHHHHCCCCCCCCCCCCCEEEEHHEEEEEECCCCHHHHHHHHHHHHHHHHHHHH
ERFEYQCTKRARDFRFLYSQGVWRGGEKLQPEDSVASILKQGTLSLGFIGLAECLVALTG
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHC
KHHGEDEESWKLGYEIISFMRDRMDKATEEHELNFSVIATPAEGLSGKFVKKDREEFGAI
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHCCC
SGITNHNYYTNSFHIPVYYNMQAINKIRLEGPFHALCNGGHITYIELDGAAMHNKKALKQ
CCCCCCCEEECEEEEEEEECHHHHCEEEECCCHHHHCCCCEEEEEEECCCHHHHHHHHHH
IVQAMAENGVGYGSINHPVDRCKCCSYHGVIGNECPSCGNEDEANIERIRRITGYLVGDM
HHHHHHHCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCH
SKWNSAKRSEEMDRVKHK
HHHCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8421692; 7610040; 9278503; 8083158; 7852304 [H]