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The map label for this gene is fliA3 [H]

Identifier: 222096892

GI number: 222096892

Start: 3182015

End: 3182722

Strand: Reverse

Name: fliA3 [H]

Synonym: BCQ_3232

Alternate gene names: 222096892

Gene position: 3182722-3182015 (Counterclockwise)

Preceding gene: 222096893

Following gene: 222096891

Centisome position: 61.04

GC content: 33.76

Gene sequence:

>708_bases
ATGAAGATCTTAAGAAAACCGAAAATAGAAGATATCGTATGTAACATACAAAATAATGAAGAAGATAAAGAAGCTTTTAT
CGTACAGTATCAGCCGTTTATTAGAAAATCAATCTCGTCTGTCTGCCGCCGATATATTACAGAACAGGATGATGAATATA
GTATTGGATTGTTTGCGTTTAACGAAGCAATTGAACAGTATTCTTATAAAAAAGGGAAATCTTTTCTAGCGTTTGCTGAT
CTTCTTATAAAAAGAGATGTAATTGACTATATACGCAAGGAGTCTAAGCATAACCTTGTCTTTTTAAAAGAAGATGAGCA
AGAGGAAATGTTAGAAATGCAAGTATCGCTTACGGAGTATATGAAGGAAATAGAAAATGGTAACCGTAAGGAAGAAATTC
TCCATTTTCAAAGTGTGTTAGCTGAGTTTAAAATCACATTTTCAGAGCTTGCTAAAGAATCTCCTAAGCATCGTGATACG
CGTGAACACTTAATAGAAATTGTAAAGATGATTATAAAAGAAGAGGAAATGATGGAGGAGCTGTTCCGGAAGAAAAAGTT
ACCGCTTAAACATATTGAACCGCGTGTTAGGGTAAGTCGTAAAACGTTGGAACGGCATAGAAAATATATCATTGCAATGT
GTATTATCTTCGCAAACAACTATACATACATTCTTGATTATATAAGGGGAGGGAAGCATGATGAATAA

Upstream 100 bases:

>100_bases
CAAGCCTAAAGAAAATGTGGTTGAATGGTCACTTGTTTAGTGACCATTTTTCTATTTCAAGCAGAAGGAGGGAGAGAGAT
TACCCGTGTTGAGTTTAGTA

Downstream 100 bases:

>100_bases
AGGAATTGTGATGGATATAAAAAAACATAGCGTAGTTGTTTTAACGCCAAATGGAGAGTTTATTACGTGTAAAAGAAAAG
GGGATTCTTGCATGATTGGA

Product: RNA polymerase sigma factor sigi

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 235; Mature: 235

Protein sequence:

>235_residues
MKILRKPKIEDIVCNIQNNEEDKEAFIVQYQPFIRKSISSVCRRYITEQDDEYSIGLFAFNEAIEQYSYKKGKSFLAFAD
LLIKRDVIDYIRKESKHNLVFLKEDEQEEMLEMQVSLTEYMKEIENGNRKEEILHFQSVLAEFKITFSELAKESPKHRDT
REHLIEIVKMIIKEEEMMEELFRKKKLPLKHIEPRVRVSRKTLERHRKYIIAMCIIFANNYTYILDYIRGGKHDE

Sequences:

>Translated_235_residues
MKILRKPKIEDIVCNIQNNEEDKEAFIVQYQPFIRKSISSVCRRYITEQDDEYSIGLFAFNEAIEQYSYKKGKSFLAFAD
LLIKRDVIDYIRKESKHNLVFLKEDEQEEMLEMQVSLTEYMKEIENGNRKEEILHFQSVLAEFKITFSELAKESPKHRDT
REHLIEIVKMIIKEEEMMEELFRKKKLPLKHIEPRVRVSRKTLERHRKYIIAMCIIFANNYTYILDYIRGGKHDE
>Mature_235_residues
MKILRKPKIEDIVCNIQNNEEDKEAFIVQYQPFIRKSISSVCRRYITEQDDEYSIGLFAFNEAIEQYSYKKGKSFLAFAD
LLIKRDVIDYIRKESKHNLVFLKEDEQEEMLEMQVSLTEYMKEIENGNRKEEILHFQSVLAEFKITFSELAKESPKHRDT
REHLIEIVKMIIKEEEMMEELFRKKKLPLKHIEPRVRVSRKTLERHRKYIIAMCIIFANNYTYILDYIRGGKHDE

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor plays a role in survival at low temperatures and could be involved in heat shock stress response, posi

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014244
- InterPro:   IPR007627
- InterPro:   IPR013325 [H]

Pfam domain/function: PF04542 Sigma70_r2 [H]

EC number: NA

Molecular weight: Translated: 28325; Mature: 28325

Theoretical pI: Translated: 7.20; Mature: 7.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKILRKPKIEDIVCNIQNNEEDKEAFIVQYQPFIRKSISSVCRRYITEQDDEYSIGLFAF
CCCCCCCCHHHHEECCCCCCCCHHHEEEECCHHHHHHHHHHHHHHHCCCCCCCEEHHHHH
NEAIEQYSYKKGKSFLAFADLLIKRDVIDYIRKESKHNLVFLKEDEQEEMLEMQVSLTEY
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHH
MKEIENGNRKEEILHFQSVLAEFKITFSELAKESPKHRDTREHLIEIVKMIIKEEEMMEE
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
LFRKKKLPLKHIEPRVRVSRKTLERHRKYIIAMCIIFANNYTYILDYIRGGKHDE
HHHHHCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCC
>Mature Secondary Structure
MKILRKPKIEDIVCNIQNNEEDKEAFIVQYQPFIRKSISSVCRRYITEQDDEYSIGLFAF
CCCCCCCCHHHHEECCCCCCCCHHHEEEECCHHHHHHHHHHHHHHHCCCCCCCEEHHHHH
NEAIEQYSYKKGKSFLAFADLLIKRDVIDYIRKESKHNLVFLKEDEQEEMLEMQVSLTEY
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHH
MKEIENGNRKEEILHFQSVLAEFKITFSELAKESPKHRDTREHLIEIVKMIIKEEEMMEE
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
LFRKKKLPLKHIEPRVRVSRKTLERHRKYIIAMCIIFANNYTYILDYIRGGKHDE
HHHHHCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]