Click here to switch to the map view.

The map label for this gene is gmuR [H]

Identifier: 222096868

GI number: 222096868

Start: 3159071

End: 3159808

Strand: Reverse

Name: gmuR [H]

Synonym: BCQ_3208

Alternate gene names: 222096868

Gene position: 3159808-3159071 (Counterclockwise)

Preceding gene: 222096869

Following gene: 222096866

Centisome position: 60.6

GC content: 40.11

Gene sequence:

>738_bases
ATGGCAAGCGGATCCACACAAGTAAAATACCTCGGCATTTATCAAAAAATGAAACAGCAAATTTTAGACGGCGAATATAA
GATTAACGAAAAAATTCCAAGTAGCCCCGTCCTTGCTGAAGAATTTGATGTTTCTGTCCTTACTATAAAAAAGGCGCTGG
ATCTGTTAGTTAGAGACGGCTACATCATTCGCCGGCGCGGAAGTGGAACGGTCGTTCAAGATTGGCGTCAGCAAGAAAAG
GCGCGAATGATTCAAACTTTAACAGGTACGAAAGCTGTTTATGGCAGTGAGGTAGAAAGTAAAATTATTGAGTTTACGAT
TGTCGGTGCCGATGAAGTCATTGCTGAAAAATTGGGTATTTCAGTAGGGGATTTTGTATATAAAATCATCCGCCTCCGCA
TCATTCACAGTATTCCAACGATTATGGAGCATACATGGATGCCGATTTCGGTCATTCCAGGTGTTGATGTTTCTGTTTTA
GAGGAATCAATCTACTCCCACATTCAAAATAAACTAGGTCTTCAAGTGGGAACATCCGTTGTTAGGGTTAAAGGAATTCG
CCCGGATGATAAAGAAAAGCAGTTTATGAACTTAACAAATCAAGATTTCCTAATGAGAGTGGAACAGGTGGCCTACTTAA
CGGATGGACGCACTTTTGAATACTCTTACGCCGATCATTTGCCGGAAACCTTTGAATTCGAAACAGTTATTACTGCAAAA
AGTTATAAAGAGGTATAA

Upstream 100 bases:

>100_bases
TAGAAAACGGATTTGCTGCGCCATCACCTTCCGTTTACAAACTTGAGGCTTTAAACTTAAATGAATAGAAGAGGGAATAC
AGCATAAAGGAGGTATGGAA

Downstream 100 bases:

>100_bases
AAAATAGGTTGGGGCACGTATTGCCTCAACCTATTTTCTGTTTTCAATATAGTAGGAACAGCTATTATTCATCTGCTGTA
ATCAGCATGGATGTGTTCCC

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: Glucomannan utilization operon repressor; Glucomannan utilization protein R [H]

Number of amino acids: Translated: 245; Mature: 244

Protein sequence:

>245_residues
MASGSTQVKYLGIYQKMKQQILDGEYKINEKIPSSPVLAEEFDVSVLTIKKALDLLVRDGYIIRRRGSGTVVQDWRQQEK
ARMIQTLTGTKAVYGSEVESKIIEFTIVGADEVIAEKLGISVGDFVYKIIRLRIIHSIPTIMEHTWMPISVIPGVDVSVL
EESIYSHIQNKLGLQVGTSVVRVKGIRPDDKEKQFMNLTNQDFLMRVEQVAYLTDGRTFEYSYADHLPETFEFETVITAK
SYKEV

Sequences:

>Translated_245_residues
MASGSTQVKYLGIYQKMKQQILDGEYKINEKIPSSPVLAEEFDVSVLTIKKALDLLVRDGYIIRRRGSGTVVQDWRQQEK
ARMIQTLTGTKAVYGSEVESKIIEFTIVGADEVIAEKLGISVGDFVYKIIRLRIIHSIPTIMEHTWMPISVIPGVDVSVL
EESIYSHIQNKLGLQVGTSVVRVKGIRPDDKEKQFMNLTNQDFLMRVEQVAYLTDGRTFEYSYADHLPETFEFETVITAK
SYKEV
>Mature_244_residues
ASGSTQVKYLGIYQKMKQQILDGEYKINEKIPSSPVLAEEFDVSVLTIKKALDLLVRDGYIIRRRGSGTVVQDWRQQEKA
RMIQTLTGTKAVYGSEVESKIIEFTIVGADEVIAEKLGISVGDFVYKIIRLRIIHSIPTIMEHTWMPISVIPGVDVSVLE
ESIYSHIQNKLGLQVGTSVVRVKGIRPDDKEKQFMNLTNQDFLMRVEQVAYLTDGRTFEYSYADHLPETFEFETVITAKS
YKEV

Specific function: Transcriptional repressor of the gmuBACDREFG operon which is involved in the uptake and degradation of glucomannan [H]

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790118, Length=218, Percent_Identity=29.3577981651376, Blast_Score=101, Evalue=5e-23,
Organism=Escherichia coli, GI1786950, Length=234, Percent_Identity=26.0683760683761, Blast_Score=100, Evalue=9e-23,
Organism=Escherichia coli, GI87082252, Length=209, Percent_Identity=25.8373205741627, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1790540, Length=225, Percent_Identity=24.8888888888889, Blast_Score=68, Evalue=6e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 27845; Mature: 27713

Theoretical pI: Translated: 6.15; Mature: 6.15

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASGSTQVKYLGIYQKMKQQILDGEYKINEKIPSSPVLAEEFDVSVLTIKKALDLLVRDG
CCCCCCEEHHHHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHCCHHHHHHHHHHHHHHCC
YIIRRRGSGTVVQDWRQQEKARMIQTLTGTKAVYGSEVESKIIEFTIVGADEVIAEKLGI
EEEEECCCCCHHHHHHHHHHHHHHHHHHCCHHHHCCHHHHEEEEEEEECHHHHHHHHHCC
SVGDFVYKIIRLRIIHSIPTIMEHTWMPISVIPGVDVSVLEESIYSHIQNKLGLQVGTSV
CHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHHHCHHHCCCE
VRVKGIRPDDKEKQFMNLTNQDFLMRVEQVAYLTDGRTFEYSYADHLPETFEFETVITAK
EEEECCCCCCHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEEEHHHCCCCCEEEEEEEECC
SYKEV
HHCCC
>Mature Secondary Structure 
ASGSTQVKYLGIYQKMKQQILDGEYKINEKIPSSPVLAEEFDVSVLTIKKALDLLVRDG
CCCCCEEHHHHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHCCHHHHHHHHHHHHHHCC
YIIRRRGSGTVVQDWRQQEKARMIQTLTGTKAVYGSEVESKIIEFTIVGADEVIAEKLGI
EEEEECCCCCHHHHHHHHHHHHHHHHHHCCHHHHCCHHHHEEEEEEEECHHHHHHHHHCC
SVGDFVYKIIRLRIIHSIPTIMEHTWMPISVIPGVDVSVLEESIYSHIQNKLGLQVGTSV
CHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHHHCHHHCCCE
VRVKGIRPDDKEKQFMNLTNQDFLMRVEQVAYLTDGRTFEYSYADHLPETFEFETVITAK
EEEECCCCCCHHHHHHCCCCHHHHHHHHHHHHHCCCCEEEEEHHHCCCCCEEEEEEEECC
SYKEV
HHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]