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The map label for this gene is xylR [H]

Identifier: 222096812

GI number: 222096812

Start: 3103102

End: 3104154

Strand: Reverse

Name: xylR [H]

Synonym: BCQ_3152

Alternate gene names: 222096812

Gene position: 3104154-3103102 (Counterclockwise)

Preceding gene: 222096813

Following gene: 222096811

Centisome position: 59.53

GC content: 33.24

Gene sequence:

>1053_bases
ATGTTGATTAAGGTGGTGAGCGATTTGAGTGAACAATTTGTTACTCAAAAATCGATTAAAGAGACAATCCTTCGCGGCAT
TCGTAAAGTTCTTTTAGAGCGAGGTAGTGCAACGAAAGTTGAGCTTAGTAATACATTAGAAATTAGTTTTCCGACGATAA
GTAAATTTATAGAAAAAATGAAACAAGACGGTGAAGTCACTTTAGCTGGTTTAGATGATTCAAGTGGTGGAAGAAGAGCG
AAACGATATGAATATAATCCAGAATATATGTTAGGTTTAGCGATATTTTTAGAAAAAAATGAAACAAACTATACAATTTT
TAACTGTTTAGGGGAAGTAAAAGAACAGGGGAGTACTTCAAGTATGTTAATTGATACGGGCGTAAATGTATTATCTAAAC
ATATTGAAGGTCTTATCGCTACATTTCCGAAAATAAGCTCTATATCAATTGGTGTGCCTGGTTCGGTTGATAATGGTCGT
ATTTTTTATATTCCTGGATATGAAAAGTTCCAAAATTTTAATTTGAAAAGTCATTTGGAGGAACAGTTTTCTATACCAGT
AGTAATAGAAAACGATATGAATGCTGCTGTTCTTGGTTATTATAAAAACACTGGAAACTATGATAATTCCTCTCTTGTAT
ATTTGTATTCCGGTCAAAATGGTCCAGGTGCAGGTATTATGGTAAATGGAGATGTCGTACGCGGAAGCACATTTTTCTCA
GGAGAGATATCTTTCGTCCCGCAGTATAATAAAAAAAATTTCTTGCAAGCTTTGAGAAGTGAAGATTCGAATAATCCAGA
GGAATATAATATAGATGCTATTACTCGTTTAATCGCTACATGTATAGCTATTATTAACCCGCATGCCTTTATCTTCTGTG
ATGATGAAGTGAATCAATTTGTAATAGAGCAAATTGTAAAAAGTTGTCCGCAGTACATTCCGGCAGAACATATTCCGAAA
ATAACAGTGAGCAATTGGAAAGAAGATTATTTATATGGATTAAAAAGTCTAGGACTTGATCTTATGATTACGAGAACGAA
TAAAGAAAATTAA

Upstream 100 bases:

>100_bases
GCATTCGGAATACTGCGAGTAGAAATATATCTTCTTTATTGCTTTAGAAAATGATGTATGATATATTGTCAACGCAACTT
ATTAAAAAGGTTTAATAAGT

Downstream 100 bases:

>100_bases
ATGTGCTGGCAATGAAGCATCCAATTTTCAGTTGAATAACATAAAAGAAAAGGTGCCAATTATGAAAATTGAACATGTAG
CAATTTGGGTGAATGATTTA

Product: rok family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 350; Mature: 350

Protein sequence:

>350_residues
MLIKVVSDLSEQFVTQKSIKETILRGIRKVLLERGSATKVELSNTLEISFPTISKFIEKMKQDGEVTLAGLDDSSGGRRA
KRYEYNPEYMLGLAIFLEKNETNYTIFNCLGEVKEQGSTSSMLIDTGVNVLSKHIEGLIATFPKISSISIGVPGSVDNGR
IFYIPGYEKFQNFNLKSHLEEQFSIPVVIENDMNAAVLGYYKNTGNYDNSSLVYLYSGQNGPGAGIMVNGDVVRGSTFFS
GEISFVPQYNKKNFLQALRSEDSNNPEEYNIDAITRLIATCIAIINPHAFIFCDDEVNQFVIEQIVKSCPQYIPAEHIPK
ITVSNWKEDYLYGLKSLGLDLMITRTNKEN

Sequences:

>Translated_350_residues
MLIKVVSDLSEQFVTQKSIKETILRGIRKVLLERGSATKVELSNTLEISFPTISKFIEKMKQDGEVTLAGLDDSSGGRRA
KRYEYNPEYMLGLAIFLEKNETNYTIFNCLGEVKEQGSTSSMLIDTGVNVLSKHIEGLIATFPKISSISIGVPGSVDNGR
IFYIPGYEKFQNFNLKSHLEEQFSIPVVIENDMNAAVLGYYKNTGNYDNSSLVYLYSGQNGPGAGIMVNGDVVRGSTFFS
GEISFVPQYNKKNFLQALRSEDSNNPEEYNIDAITRLIATCIAIINPHAFIFCDDEVNQFVIEQIVKSCPQYIPAEHIPK
ITVSNWKEDYLYGLKSLGLDLMITRTNKEN
>Mature_350_residues
MLIKVVSDLSEQFVTQKSIKETILRGIRKVLLERGSATKVELSNTLEISFPTISKFIEKMKQDGEVTLAGLDDSSGGRRA
KRYEYNPEYMLGLAIFLEKNETNYTIFNCLGEVKEQGSTSSMLIDTGVNVLSKHIEGLIATFPKISSISIGVPGSVDNGR
IFYIPGYEKFQNFNLKSHLEEQFSIPVVIENDMNAAVLGYYKNTGNYDNSSLVYLYSGQNGPGAGIMVNGDVVRGSTFFS
GEISFVPQYNKKNFLQALRSEDSNNPEEYNIDAITRLIATCIAIINPHAFIFCDDEVNQFVIEQIVKSCPQYIPAEHIPK
ITVSNWKEDYLYGLKSLGLDLMITRTNKEN

Specific function: Transcriptional repressor of xylose-utilizing enzymes [H]

COG id: COG1940

COG function: function code KG; Transcriptional regulator/sugar kinase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ROK (nagC/xylR) family [H]

Homologues:

Organism=Escherichia coli, GI1786891, Length=231, Percent_Identity=21.6450216450216, Blast_Score=68, Evalue=8e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000835
- InterPro:   IPR000600
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01047 MarR; PF00480 ROK [H]

EC number: NA

Molecular weight: Translated: 39162; Mature: 39162

Theoretical pI: Translated: 5.00; Mature: 5.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLIKVVSDLSEQFVTQKSIKETILRGIRKVLLERGSATKVELSNTLEISFPTISKFIEKM
CEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCEEEEECHHHHHHHHHH
KQDGEVTLAGLDDSSGGRRAKRYEYNPEYMLGLAIFLEKNETNYTIFNCLGEVKEQGSTS
HCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCEEHHHHHHHHHHCCCCC
SMLIDTGVNVLSKHIEGLIATFPKISSISIGVPGSVDNGRIFYIPGYEKFQNFNLKSHLE
EEEEHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCEEEEECCHHHHHCCCHHHHHH
EQFSIPVVIENDMNAAVLGYYKNTGNYDNSSLVYLYSGQNGPGAGIMVNGDVVRGSTFFS
HHCCCCEEEECCCCEEEEEEECCCCCCCCCEEEEEEECCCCCCCEEEEECCEEECCEEEC
GEISFVPQYNKKNFLQALRSEDSNNPEEYNIDAITRLIATCIAIINPHAFIFCDDEVNQF
CEEEEEECCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHHHH
VIEQIVKSCPQYIPAEHIPKITVSNWKEDYLYGLKSLGLDLMITRTNKEN
HHHHHHHHCHHHCCHHHCCCCEECCCHHHHHHHHHHCCEEEEEEECCCCC
>Mature Secondary Structure
MLIKVVSDLSEQFVTQKSIKETILRGIRKVLLERGSATKVELSNTLEISFPTISKFIEKM
CEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCEEEEECHHHHHHHHHH
KQDGEVTLAGLDDSSGGRRAKRYEYNPEYMLGLAIFLEKNETNYTIFNCLGEVKEQGSTS
HCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCEEHHHHHHHHHHCCCCC
SMLIDTGVNVLSKHIEGLIATFPKISSISIGVPGSVDNGRIFYIPGYEKFQNFNLKSHLE
EEEEHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCEEEEECCHHHHHCCCHHHHHH
EQFSIPVVIENDMNAAVLGYYKNTGNYDNSSLVYLYSGQNGPGAGIMVNGDVVRGSTFFS
HHCCCCEEEECCCCEEEEEEECCCCCCCCCEEEEEEECCCCCCCEEEEECCEEECCEEEC
GEISFVPQYNKKNFLQALRSEDSNNPEEYNIDAITRLIATCIAIINPHAFIFCDDEVNQF
CEEEEEECCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHHHH
VIEQIVKSCPQYIPAEHIPKITVSNWKEDYLYGLKSLGLDLMITRTNKEN
HHHHHHHHCHHHCCHHHCCCCEECCCHHHHHHHHHHCCEEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8920183 [H]