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The map label for this gene is rraA [C]

Identifier: 222096778

GI number: 222096778

Start: 3075056

End: 3075535

Strand: Reverse

Name: rraA [C]

Synonym: BCQ_3118

Alternate gene names: 222096778

Gene position: 3075535-3075056 (Counterclockwise)

Preceding gene: 222096780

Following gene: 222096777

Centisome position: 58.98

GC content: 37.71

Gene sequence:

>480_bases
ATGTGGAAAACTACGGATCTATGTGATGAGTTTGAAAATGAATTACAAATATGTCGCCAATCTTTTCGGTCTTTTGGGAA
GAAAGAACAATTCTACGGGAAAATTGCAACGGTAAAAGTGAAGGATGATAATGTACTAGTGAAGGAAGGGTTGCAAACAT
TACCAGAAGGAACGGTATTAGTTGTTGATGGGGGAGCGTCTACGAATTGTGCGTTACTCGGTGATAATTTGGCAGCTATT
GCGGAGGAAAGAAAGCTAGCAGGAATTATTGTATATGGATACGTTCGTGATTCTAGTGAACTAAAGAATATAAATATAGG
TATTTTAGCGTTAGGGACAATGCCGAATAGAAGTGTAAAAGAAGGGAAAGGAGAACGAAATATTTCATTGCAATTTGGGC
AAGTTGAATGGAAGCCGAATGAATATGTGTATGTGGATGAAGATGGCGTCATTATTAGTGAAAAGAGTTTGCATCGTTAA

Upstream 100 bases:

>100_bases
TCCTTTTTCTGCATATATAAATTATCGCAACAATAGACAGGGAAACGAAAATAATCCAAGAATATGTTAAATAGAAAGTA
AAAGGAAAAGAGGGAAAAAG

Downstream 100 bases:

>100_bases
AGGTTAGTAAGTTACTATTCTTAGAAAATAAATCCGATAAAGCATGGACAAAATTCTATGTCAATAGTAAAATAATACAG
AAATTTAAAATTAACAGAAT

Product: ribonuclease activity regulator protein rraa

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 159; Mature: 159

Protein sequence:

>159_residues
MWKTTDLCDEFENELQICRQSFRSFGKKEQFYGKIATVKVKDDNVLVKEGLQTLPEGTVLVVDGGASTNCALLGDNLAAI
AEERKLAGIIVYGYVRDSSELKNINIGILALGTMPNRSVKEGKGERNISLQFGQVEWKPNEYVYVDEDGVIISEKSLHR

Sequences:

>Translated_159_residues
MWKTTDLCDEFENELQICRQSFRSFGKKEQFYGKIATVKVKDDNVLVKEGLQTLPEGTVLVVDGGASTNCALLGDNLAAI
AEERKLAGIIVYGYVRDSSELKNINIGILALGTMPNRSVKEGKGERNISLQFGQVEWKPNEYVYVDEDGVIISEKSLHR
>Mature_159_residues
MWKTTDLCDEFENELQICRQSFRSFGKKEQFYGKIATVKVKDDNVLVKEGLQTLPEGTVLVVDGGASTNCALLGDNLAAI
AEERKLAGIIVYGYVRDSSELKNINIGILALGTMPNRSVKEGKGERNISLQFGQVEWKPNEYVYVDEDGVIISEKSLHR

Specific function: Regulator Of Rnase E/Rne, Which Inhibits The Endonuclease Activity And Thereby Leads To Increase The Half-Life And Abundance Of Rnas. General Modulator Of RNA Abundance. Does Not Have Any Methyltransferase Activity. [C]

COG id: COG0684

COG function: function code H; Demethylmenaquinone methyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RraA family [H]

Homologues:

Organism=Escherichia coli, GI1790364, Length=156, Percent_Identity=35.8974358974359, Blast_Score=110, Evalue=6e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005493
- InterPro:   IPR010203 [H]

Pfam domain/function: PF03737 Methyltransf_6 [H]

EC number: NA

Molecular weight: Translated: 17716; Mature: 17716

Theoretical pI: Translated: 4.88; Mature: 4.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWKTTDLCDEFENELQICRQSFRSFGKKEQFYGKIATVKVKDDNVLVKEGLQTLPEGTVL
CCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHCEEEEEEEECCCCEEHHHHHHHCCCCEEE
VVDGGASTNCALLGDNLAAIAEERKLAGIIVYGYVRDSSELKNINIGILALGTMPNRSVK
EEECCCCCCEEEECCCHHHHHHCCCEEEEEEEEEEECCCCCCCCEEEEEEEECCCCCCHH
EGKGERNISLQFGQVEWKPNEYVYVDEDGVIISEKSLHR
CCCCCCEEEEEEEEEEECCCCEEEECCCCEEECCCCCCC
>Mature Secondary Structure
MWKTTDLCDEFENELQICRQSFRSFGKKEQFYGKIATVKVKDDNVLVKEGLQTLPEGTVL
CCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHCEEEEEEEECCCCEEHHHHHHHCCCCEEE
VVDGGASTNCALLGDNLAAIAEERKLAGIIVYGYVRDSSELKNINIGILALGTMPNRSVK
EEECCCCCCEEEECCCHHHHHHCCCEEEEEEEEEEECCCCCCCCEEEEEEEECCCCCCHH
EGKGERNISLQFGQVEWKPNEYVYVDEDGVIISEKSLHR
CCCCCCEEEEEEEEEEECCCCEEEECCCCEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12721629 [H]