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The map label for this gene is araC [H]

Identifier: 222096738

GI number: 222096738

Start: 3036023

End: 3036760

Strand: Reverse

Name: araC [H]

Synonym: BCQ_3078

Alternate gene names: 222096738

Gene position: 3036760-3036023 (Counterclockwise)

Preceding gene: 222096740

Following gene: 222096737

Centisome position: 58.24

GC content: 37.13

Gene sequence:

>738_bases
GTGCCTTGTGCTGAGTCTACAGATTCTTTCCCAGGATTTGTATTTCCACTTACAGGGAAGACGCAATTTCAATTTAATGG
TACGCCGTATATCCTTTCCCCAGGAAAAGTTATACATGGGGGTGCAAAAATGACATTAGCCCATAAAATGCTTGGTGAAA
TAAACTGGGAATATATTCTTGTTTTATATCGGATAAGCAATTCAGAACGAGAAGACTCTGGCTTTACTCATCAGCATTTT
GAATTGTTAACAGGGCAATCTCCTCGTCTTGTCGAATTACTTATGCGTCTTTGGGATGTGTATAATCAGCGAGGAGGCAT
TTCGATGTTTCAGACTGAAATGCTGTTTCGCGAAGCGTTGAATGAAGCTTTATTAAGTGTTGTCAATAGAGAAAACAACT
ATGAATCGCATACTTTATTCGAACGAATATCTAGTTACGTTCATAAATACTATTATAAAGATATTACAATAAATACGCTT
ACAGAACAAAATAATGTTAATCGAAATCGTCTTTCTTACGTGTTTAGAAAGCATGCAGGTATGGGGCCAGCAGAATATTT
ATTGAACTATCGTATAAAGATGGCTCAAAAAATGTTATGTACAAGTGGTGTGCCTGTACAACAAATTGCGCAGGCTGTTG
GAATCGCAGACCCTTTTTATTTTAGTAGAGTTTTCAAGAAGCGGGTTGGCATTTCGCCTACTAAATATCGCGAGAAGTTC
ATCAATAATCCATACTAA

Upstream 100 bases:

>100_bases
GGCTTGCATTGTGAAGTTGGACGTGAATGAGTTAGCAGAGTATCTTGCCAATACTCCTTTCCGAGTAGAAGGAGTATATC
GTTATGCTAAAAATCCAGGT

Downstream 100 bases:

>100_bases
TGTCAACAGAGGTCCATTCTTATTTGAAAATCACTGTTCTATACTTATGGAGAGTTAAAGGAAACATTAGATTGAAAGTA
CTTTCATTGAAATCACTCCT

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 245; Mature: 244

Protein sequence:

>245_residues
MPCAESTDSFPGFVFPLTGKTQFQFNGTPYILSPGKVIHGGAKMTLAHKMLGEINWEYILVLYRISNSEREDSGFTHQHF
ELLTGQSPRLVELLMRLWDVYNQRGGISMFQTEMLFREALNEALLSVVNRENNYESHTLFERISSYVHKYYYKDITINTL
TEQNNVNRNRLSYVFRKHAGMGPAEYLLNYRIKMAQKMLCTSGVPVQQIAQAVGIADPFYFSRVFKKRVGISPTKYREKF
INNPY

Sequences:

>Translated_245_residues
MPCAESTDSFPGFVFPLTGKTQFQFNGTPYILSPGKVIHGGAKMTLAHKMLGEINWEYILVLYRISNSEREDSGFTHQHF
ELLTGQSPRLVELLMRLWDVYNQRGGISMFQTEMLFREALNEALLSVVNRENNYESHTLFERISSYVHKYYYKDITINTL
TEQNNVNRNRLSYVFRKHAGMGPAEYLLNYRIKMAQKMLCTSGVPVQQIAQAVGIADPFYFSRVFKKRVGISPTKYREKF
INNPY
>Mature_244_residues
PCAESTDSFPGFVFPLTGKTQFQFNGTPYILSPGKVIHGGAKMTLAHKMLGEINWEYILVLYRISNSEREDSGFTHQHFE
LLTGQSPRLVELLMRLWDVYNQRGGISMFQTEMLFREALNEALLSVVNRENNYESHTLFERISSYVHKYYYKDITINTLT
EQNNVNRNRLSYVFRKHAGMGPAEYLLNYRIKMAQKMLCTSGVPVQQIAQAVGIADPFYFSRVFKKRVGISPTKYREKFI
NNPY

Specific function: Regulatory protein for the msm operon for multiple sugar metabolism. Activates the transcription of the msmEFGK, aga, dexB and gftA genes [H]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790391, Length=105, Percent_Identity=32.3809523809524, Blast_Score=67, Evalue=8e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 28411; Mature: 28280

Theoretical pI: Translated: 9.58; Mature: 9.58

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPCAESTDSFPGFVFPLTGKTQFQFNGTPYILSPGKVIHGGAKMTLAHKMLGEINWEYIL
CCCCCCCCCCCCEEEEECCCEEEEECCCCEEECCCCEEECCCHHHHHHHHHHHCCCEEEE
VLYRISNSEREDSGFTHQHFELLTGQSPRLVELLMRLWDVYNQRGGISMFQTEMLFREAL
EEEEECCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
NEALLSVVNRENNYESHTLFERISSYVHKYYYKDITINTLTEQNNVNRNRLSYVFRKHAG
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCEEEEEECCCCCCCHHHHHHHHHHHCC
MGPAEYLLNYRIKMAQKMLCTSGVPVQQIAQAVGIADPFYFSRVFKKRVGISPTKYREKF
CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHH
INNPY
CCCCC
>Mature Secondary Structure 
PCAESTDSFPGFVFPLTGKTQFQFNGTPYILSPGKVIHGGAKMTLAHKMLGEINWEYIL
CCCCCCCCCCCEEEEECCCEEEEECCCCEEECCCCEEECCCHHHHHHHHHHHCCCEEEE
VLYRISNSEREDSGFTHQHFELLTGQSPRLVELLMRLWDVYNQRGGISMFQTEMLFREAL
EEEEECCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
NEALLSVVNRENNYESHTLFERISSYVHKYYYKDITINTLTEQNNVNRNRLSYVFRKHAG
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCEEEEEECCCCCCCHHHHHHHHHHHCC
MGPAEYLLNYRIKMAQKMLCTSGVPVQQIAQAVGIADPFYFSRVFKKRVGISPTKYREKF
CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHH
INNPY
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1537846; 12397186 [H]