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The map label for this gene is ytbD [H]

Identifier: 222096682

GI number: 222096682

Start: 2974175

End: 2975317

Strand: Reverse

Name: ytbD [H]

Synonym: BCQ_3022

Alternate gene names: 222096682

Gene position: 2975317-2974175 (Counterclockwise)

Preceding gene: 222096683

Following gene: 222096681

Centisome position: 57.06

GC content: 35.7

Gene sequence:

>1143_bases
ATGCCATCGATTATTTATTTATTAGCTTTAGCAATCTTTTGTATGACTACATCAGAATTTATGGTTGCAGGTATGATGAA
TGAACTTGCTCTTGCATTCCATGTTTCTGTATCATCTATTGGGTATTTAATTTCAGCTTATGCAGGAGCAATGGTAATAG
GAGGTCCCATTTTAACTGCAATTCTTTTACGAATGCGCAGCAAACAAGCATTATTGTTTTTAATGTTCGTATTTTTAATT
GGTCAATCGCTCGGAGCTATTGCTTGGAACTATGATATTATGATGATTTCACGTATTATAACTGGTATTGCTTCAGCTTC
AGCTTTTGGAGTTGCGATTTCCTTTTCTGCGACATTGGTTCACTCTGATTCAAGGGGAAAAGCCGCATCAATTGTACTTG
CAGGTTTAATGTTCGCAACTGTATTAGGTTTACCTATAACAACCGTTATTTCCCAATCTTTTGGCTGGCGTATTAGTTTT
GGGGCTGTTTCTGTTCTTGTGCTAGTATCAGGGCTTATGATTCAATGGTTGTTACCATCATCTTCAAATAAAGAGCAATT
AAATTGGAAAGACGAACTTCTGCGATTTAAGAATATTCATCTTTGGGCAGCGTACGTAACAAGTATGTTCATTATTGGTG
GTACGTTTGCAGCATTTAGTTATTTCACTCCGATCTTTACAAATGTCACAGGCTTTTCAAGTGCAAGTATTCCATATTTA
CTTGCTCTCTATGGTAGTGCGACGGTAATTGGAAATATAATAATCGGCAAGTTTGCTGATAAATTTACAATGAAAATACT
TATGGGTGGATTAATTATATTAATCATAGCGTTGTCTTTATTTGCTTTAAGTGCAGAGAATAAATACATTGCAGTGATTT
CTACAATTTTTATTGGTTTAACTGGTGTAGCATTGAATCCAGCTATGGTTGCGAGGGTGATGAAAACAGCTAGTAATGGA
ATAATGATAAATACCGTTCATAGTTCTTTTATTACGCTAGGTATTGTTATTGGTTCGTCACTAGGTGGTCTTGGGATCAG
TAAAGGATATGGTTTTGTATCTCCGCTATGGATTGGAGCTTGTTTAGCTATCCTTGGGGTAATTTCGTTATTCCCATATT
TACATAAAGGAAAGGCAGATTAA

Upstream 100 bases:

>100_bases
TTATCAAAGGAACAGTGGAGTCTATTTGTGGCGCTTAGTGCGCTCTTTTTTCGCACTATTTTTGTACCGATCATTACAAT
AATGAATAAGGAGTGTTTTT

Downstream 100 bases:

>100_bases
GATGTTTAAAATTTCTTTTTATGGAGGAGCACCCCATCACCATCAAGCTAATATTTTCATATCCCCCTAAATTAAAATTT
TCTTTCTCTACAGATAGTTA

Product: major facilitator family transporter; chloramphenicol resistance protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 380; Mature: 379

Protein sequence:

>380_residues
MPSIIYLLALAIFCMTTSEFMVAGMMNELALAFHVSVSSIGYLISAYAGAMVIGGPILTAILLRMRSKQALLFLMFVFLI
GQSLGAIAWNYDIMMISRIITGIASASAFGVAISFSATLVHSDSRGKAASIVLAGLMFATVLGLPITTVISQSFGWRISF
GAVSVLVLVSGLMIQWLLPSSSNKEQLNWKDELLRFKNIHLWAAYVTSMFIIGGTFAAFSYFTPIFTNVTGFSSASIPYL
LALYGSATVIGNIIIGKFADKFTMKILMGGLIILIIALSLFALSAENKYIAVISTIFIGLTGVALNPAMVARVMKTASNG
IMINTVHSSFITLGIVIGSSLGGLGISKGYGFVSPLWIGACLAILGVISLFPYLHKGKAD

Sequences:

>Translated_380_residues
MPSIIYLLALAIFCMTTSEFMVAGMMNELALAFHVSVSSIGYLISAYAGAMVIGGPILTAILLRMRSKQALLFLMFVFLI
GQSLGAIAWNYDIMMISRIITGIASASAFGVAISFSATLVHSDSRGKAASIVLAGLMFATVLGLPITTVISQSFGWRISF
GAVSVLVLVSGLMIQWLLPSSSNKEQLNWKDELLRFKNIHLWAAYVTSMFIIGGTFAAFSYFTPIFTNVTGFSSASIPYL
LALYGSATVIGNIIIGKFADKFTMKILMGGLIILIIALSLFALSAENKYIAVISTIFIGLTGVALNPAMVARVMKTASNG
IMINTVHSSFITLGIVIGSSLGGLGISKGYGFVSPLWIGACLAILGVISLFPYLHKGKAD
>Mature_379_residues
PSIIYLLALAIFCMTTSEFMVAGMMNELALAFHVSVSSIGYLISAYAGAMVIGGPILTAILLRMRSKQALLFLMFVFLIG
QSLGAIAWNYDIMMISRIITGIASASAFGVAISFSATLVHSDSRGKAASIVLAGLMFATVLGLPITTVISQSFGWRISFG
AVSVLVLVSGLMIQWLLPSSSNKEQLNWKDELLRFKNIHLWAAYVTSMFIIGGTFAAFSYFTPIFTNVTGFSSASIPYLL
ALYGSATVIGNIIIGKFADKFTMKILMGGLIILIIALSLFALSAENKYIAVISTIFIGLTGVALNPAMVARVMKTASNGI
MINTVHSSFITLGIVIGSSLGGLGISKGYGFVSPLWIGACLAILGVISLFPYLHKGKAD

Specific function: Unknown

COG id: COG2814

COG function: function code G; Arabinose efflux permease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily [H]

Homologues:

Organism=Escherichia coli, GI1787947, Length=315, Percent_Identity=31.7460317460317, Blast_Score=148, Evalue=5e-37,
Organism=Escherichia coli, GI1786595, Length=263, Percent_Identity=27.3764258555133, Blast_Score=123, Evalue=2e-29,
Organism=Escherichia coli, GI1787808, Length=255, Percent_Identity=28.2352941176471, Blast_Score=104, Evalue=1e-23,
Organism=Escherichia coli, GI145693198, Length=368, Percent_Identity=21.7391304347826, Blast_Score=70, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 40403; Mature: 40272

Theoretical pI: Translated: 10.04; Mature: 10.04

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPSIIYLLALAIFCMTTSEFMVAGMMNELALAFHVSVSSIGYLISAYAGAMVIGGPILTA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCCHHHHHH
ILLRMRSKQALLFLMFVFLIGQSLGAIAWNYDIMMISRIITGIASASAFGVAISFSATLV
HHHHHHCHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHCCHHHEEEEEEEEEEE
HSDSRGKAASIVLAGLMFATVLGLPITTVISQSFGWRISFGAVSVLVLVSGLMIQWLLPS
ECCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHCCCC
SSNKEQLNWKDELLRFKNIHLWAAYVTSMFIIGGTFAAFSYFTPIFTNVTGFSSASIPYL
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHH
LALYGSATVIGNIIIGKFADKFTMKILMGGLIILIIALSLFALSAENKYIAVISTIFIGL
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
TGVALNPAMVARVMKTASNGIMINTVHSSFITLGIVIGSSLGGLGISKGYGFVSPLWIGA
HHHHCCHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH
CLAILGVISLFPYLHKGKAD
HHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
PSIIYLLALAIFCMTTSEFMVAGMMNELALAFHVSVSSIGYLISAYAGAMVIGGPILTA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCCHHHHHH
ILLRMRSKQALLFLMFVFLIGQSLGAIAWNYDIMMISRIITGIASASAFGVAISFSATLV
HHHHHHCHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHCCHHHEEEEEEEEEEE
HSDSRGKAASIVLAGLMFATVLGLPITTVISQSFGWRISFGAVSVLVLVSGLMIQWLLPS
ECCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHCCCC
SSNKEQLNWKDELLRFKNIHLWAAYVTSMFIIGGTFAAFSYFTPIFTNVTGFSSASIPYL
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHH
LALYGSATVIGNIIIGKFADKFTMKILMGGLIILIIALSLFALSAENKYIAVISTIFIGL
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
TGVALNPAMVARVMKTASNGIMINTVHSSFITLGIVIGSSLGGLGISKGYGFVSPLWIGA
HHHHCCHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH
CLAILGVISLFPYLHKGKAD
HHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]