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The map label for this gene is yhcR [H]

Identifier: 222096624

GI number: 222096624

Start: 2903229

End: 2904818

Strand: Reverse

Name: yhcR [H]

Synonym: BCQ_2964

Alternate gene names: 222096624

Gene position: 2904818-2903229 (Counterclockwise)

Preceding gene: 222096625

Following gene: 222096623

Centisome position: 55.71

GC content: 35.66

Gene sequence:

>1590_bases
ATGTTGAAAAAAATCATTCCAGTTGCTTTAGCATTAAGTACAGTTACTTTTACTAGTGTATTCGCTGTGCCTTCAGCCCA
AGCAAGTACAGAACCAAACCGCTACATAGATGTGCAAATGCTCGGGATTAACGATTTTCATGGGCAACTAGACACAGTAA
AAAAAATTAACAATAAAGATGCAGGGGGAATCGAGTACTTAGGGGCTTATTTACGCGATCGTGAAAAACAAAATCCGAAT
ACATTAAAAGTACATGCTGGCGATGTTGTTGGAGCAAGTACTCCTGTTTCAGCATTATTACAAGACGAACCTACCATTGA
ATTTCTAAATGATTTAAAATTCGATGTTGGAACTATAGGAAATCATGAATTTGATGAAGGTGTTGAAGAAATGAAACGCC
TTATTTATGGAGGATACCATGAGAAAACAGGGAAATTTAAAGGTGCAAAATTCCCATATGTTGCCGCAAATTTCTATAAT
AAATCCACTGGTCGTTTATTTTTACCACCATTCACTATAAAAAAGGTACAAGGAGTTCCTGTTGGATTTATCGGAGTCGT
AACAACGGATGTGCCTAACCTTGTTATGCCTACTATGCTAAAGAATGTAGAAATTACAGATGAAGTTGAAGCTATTAACA
AATCCGTAAAGCAATTAAAAAAACTAGGCGTTAAATCTATCGTTGTTCTTGCACATAACGGGGGGACAACAGATGGGAAC
GGCGTAACAAATGGTGATATCGTCCGATTAGCAAATGAGACTGATCCAGAAGTCGATGTTATTTTTGGTGGGCATAGCCA
CACTTATGTAAATGGAACTGTTAATAATAAACTTGTCGTACAAGCAAATTCTTACGGTATGGCTTTTGCTGATGTTGATG
TAAAGATTGATCGTAAAACACAAGATATTGTTGAGAAAAAAGCAGAAATTGTTACAACTTACCATGAAGGCATGGAGCCT
GATAAAAAAATAAAGAAGAAGATGGAGAAATATCAAGCAAAAATCGCACCTCTTGTTAATGAAGTTGTAGGTAAGTCTAT
TGCTCCACTAGATCGCAAACTAAATACGGCTGGTGAATCTACTCTTGGAAATTTAGTTGCTGATGCCCAGCGTGCAACAA
TGCAATCTCAAATTGCACTTATGAATCCTGGTGGTATTCGTAATGACTTAGATGCTGGTGATATTACATGGGGAGAGATA
TATGGTATTCAACCATTCGGAAATCAATTAATAAAAGTAAATTTAACGGGTCAAGATATTCGTGATATTTTAAATCAACA
ATGGCAAAAAGACATAACAAGAATGCTTCAAATTTCAGGGATCCAATACACTTGGGATGCAAACAAACCTAATGGAGAAA
AAGTAACAAGTATTCACCTAACAAATGGAGAAGAAATTATTCCTTCTAAAACTTACAGCGTCGTTGCGAACGCATTTTTA
GCTTCAGGTGGAGATGGATTTGTATCCTTTAAAAACGGTAAAGATGCTGAAACAGGACCAACTGATTTTGAAGCATTAGT
AGATTACATAAAAAAATCAAAAGAACCAATTCAGTCTATTATTGATGGAAGAATTCAAAAAAAAAATTAG

Upstream 100 bases:

>100_bases
ATTTTTATAATTAGTAGAATTTTTATAGAAATAATCCTCTTAATATATTAAAATAACATCGTATTATGTAAGATTTTAAT
TATTAGGGGAGAGAAATTTT

Downstream 100 bases:

>100_bases
GTTTTTATTAATCTCAAAAAAATAGATTACCTATGCACTATACTTTTTCGTGTGCAGGTAATCTATTTTTTTGATTTGAA
ATAGAGTTTTACCGTGGCTA

Product: 5'-nucleotidase

Products: ribonucleoside; phosphate

Alternate protein names: NA

Number of amino acids: Translated: 529; Mature: 529

Protein sequence:

>529_residues
MLKKIIPVALALSTVTFTSVFAVPSAQASTEPNRYIDVQMLGINDFHGQLDTVKKINNKDAGGIEYLGAYLRDREKQNPN
TLKVHAGDVVGASTPVSALLQDEPTIEFLNDLKFDVGTIGNHEFDEGVEEMKRLIYGGYHEKTGKFKGAKFPYVAANFYN
KSTGRLFLPPFTIKKVQGVPVGFIGVVTTDVPNLVMPTMLKNVEITDEVEAINKSVKQLKKLGVKSIVVLAHNGGTTDGN
GVTNGDIVRLANETDPEVDVIFGGHSHTYVNGTVNNKLVVQANSYGMAFADVDVKIDRKTQDIVEKKAEIVTTYHEGMEP
DKKIKKKMEKYQAKIAPLVNEVVGKSIAPLDRKLNTAGESTLGNLVADAQRATMQSQIALMNPGGIRNDLDAGDITWGEI
YGIQPFGNQLIKVNLTGQDIRDILNQQWQKDITRMLQISGIQYTWDANKPNGEKVTSIHLTNGEEIIPSKTYSVVANAFL
ASGGDGFVSFKNGKDAETGPTDFEALVDYIKKSKEPIQSIIDGRIQKKN

Sequences:

>Translated_529_residues
MLKKIIPVALALSTVTFTSVFAVPSAQASTEPNRYIDVQMLGINDFHGQLDTVKKINNKDAGGIEYLGAYLRDREKQNPN
TLKVHAGDVVGASTPVSALLQDEPTIEFLNDLKFDVGTIGNHEFDEGVEEMKRLIYGGYHEKTGKFKGAKFPYVAANFYN
KSTGRLFLPPFTIKKVQGVPVGFIGVVTTDVPNLVMPTMLKNVEITDEVEAINKSVKQLKKLGVKSIVVLAHNGGTTDGN
GVTNGDIVRLANETDPEVDVIFGGHSHTYVNGTVNNKLVVQANSYGMAFADVDVKIDRKTQDIVEKKAEIVTTYHEGMEP
DKKIKKKMEKYQAKIAPLVNEVVGKSIAPLDRKLNTAGESTLGNLVADAQRATMQSQIALMNPGGIRNDLDAGDITWGEI
YGIQPFGNQLIKVNLTGQDIRDILNQQWQKDITRMLQISGIQYTWDANKPNGEKVTSIHLTNGEEIIPSKTYSVVANAFL
ASGGDGFVSFKNGKDAETGPTDFEALVDYIKKSKEPIQSIIDGRIQKKN
>Mature_529_residues
MLKKIIPVALALSTVTFTSVFAVPSAQASTEPNRYIDVQMLGINDFHGQLDTVKKINNKDAGGIEYLGAYLRDREKQNPN
TLKVHAGDVVGASTPVSALLQDEPTIEFLNDLKFDVGTIGNHEFDEGVEEMKRLIYGGYHEKTGKFKGAKFPYVAANFYN
KSTGRLFLPPFTIKKVQGVPVGFIGVVTTDVPNLVMPTMLKNVEITDEVEAINKSVKQLKKLGVKSIVVLAHNGGTTDGN
GVTNGDIVRLANETDPEVDVIFGGHSHTYVNGTVNNKLVVQANSYGMAFADVDVKIDRKTQDIVEKKAEIVTTYHEGMEP
DKKIKKKMEKYQAKIAPLVNEVVGKSIAPLDRKLNTAGESTLGNLVADAQRATMQSQIALMNPGGIRNDLDAGDITWGEI
YGIQPFGNQLIKVNLTGQDIRDILNQQWQKDITRMLQISGIQYTWDANKPNGEKVTSIHLTNGEEIIPSKTYSVVANAFL
ASGGDGFVSFKNGKDAETGPTDFEALVDYIKKSKEPIQSIIDGRIQKKN

Specific function: Sugar-nonspecific endonuclease that yields nucleotide 3'-monophosphate products. No 5'-nucleotidase activity was detected, using 5'-AMP as the substrate, in the presence of diverse divalent metals and with various pH values [H]

COG id: COG0737

COG function: function code F; 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases

Gene ontology:

Cell location: Periplasmic Protein [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 TNase-like domain [H]

Homologues:

Organism=Homo sapiens, GI4505467, Length=537, Percent_Identity=26.0707635009311, Blast_Score=144, Evalue=2e-34,
Organism=Escherichia coli, GI1786687, Length=551, Percent_Identity=26.3157894736842, Blast_Score=142, Evalue=7e-35,
Organism=Escherichia coli, GI1790658, Length=565, Percent_Identity=23.0088495575221, Blast_Score=106, Evalue=3e-24,
Organism=Drosophila melanogaster, GI19922446, Length=567, Percent_Identity=27.8659611992945, Blast_Score=154, Evalue=2e-37,
Organism=Drosophila melanogaster, GI24654424, Length=567, Percent_Identity=27.8659611992945, Blast_Score=154, Evalue=2e-37,
Organism=Drosophila melanogaster, GI221329836, Length=550, Percent_Identity=25.8181818181818, Blast_Score=145, Evalue=9e-35,
Organism=Drosophila melanogaster, GI24641187, Length=553, Percent_Identity=26.0397830018083, Blast_Score=143, Evalue=2e-34,
Organism=Drosophila melanogaster, GI19921980, Length=449, Percent_Identity=24.9443207126949, Blast_Score=120, Evalue=2e-27,
Organism=Drosophila melanogaster, GI24652512, Length=449, Percent_Identity=24.9443207126949, Blast_Score=120, Evalue=3e-27,
Organism=Drosophila melanogaster, GI161076508, Length=449, Percent_Identity=24.7216035634744, Blast_Score=119, Evalue=4e-27,
Organism=Drosophila melanogaster, GI19922444, Length=506, Percent_Identity=25.296442687747, Blast_Score=119, Evalue=4e-27,
Organism=Drosophila melanogaster, GI28573524, Length=542, Percent_Identity=24.5387453874539, Blast_Score=117, Evalue=2e-26,

Paralogues:

None

Copy number: 60 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008334
- InterPro:   IPR006146
- InterPro:   IPR006179
- InterPro:   IPR019948
- InterPro:   IPR019931
- InterPro:   IPR004843
- InterPro:   IPR016027
- InterPro:   IPR004365
- InterPro:   IPR016071
- InterPro:   IPR006021 [H]

Pfam domain/function: PF02872 5_nucleotid_C; PF00746 Gram_pos_anchor; PF00149 Metallophos; PF00565 SNase; PF01336 tRNA_anti [H]

EC number: 3.1.3.5

Molecular weight: Translated: 57886; Mature: 57886

Theoretical pI: Translated: 6.82; Mature: 6.82

Prosite motif: PS00786 5_NUCLEOTIDASE_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKKIIPVALALSTVTFTSVFAVPSAQASTEPNRYIDVQMLGINDFHGQLDTVKKINNKD
CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCC
AGGIEYLGAYLRDREKQNPNTLKVHAGDVVGASTPVSALLQDEPTIEFLNDLKFDVGTIG
CCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHHCCCCHHHHHHHCCCCCCCCC
NHEFDEGVEEMKRLIYGGYHEKTGKFKGAKFPYVAANFYNKSTGRLFLPPFTIKKVQGVP
CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEECCCHHHHCCCCC
VGFIGVVTTDVPNLVMPTMLKNVEITDEVEAINKSVKQLKKLGVKSIVVLAHNGGTTDGN
EEEEEEEECCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCC
GVTNGDIVRLANETDPEVDVIFGGHSHTYVNGTVNNKLVVQANSYGMAFADVDVKIDRKT
CCCCCCEEEECCCCCCCEEEEECCCCEEEEECCCCCEEEEEECCCCEEEEEEEEEECCCH
QDIVEKKAEIVTTYHEGMEPDKKIKKKMEKYQAKIAPLVNEVVGKSIAPLDRKLNTAGES
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCHH
TLGNLVADAQRATMQSQIALMNPGGIRNDLDAGDITWGEIYGIQPFGNQLIKVNLTGQDI
HHHHHHHHHHHHHHHHCEEEECCCCCCCCCCCCCCCHHHEEECCCCCCEEEEEEECCHHH
RDILNQQWQKDITRMLQISGIQYTWDANKPNGEKVTSIHLTNGEEIIPSKTYSVVANAFL
HHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCEEEEEEECCCCEECCCHHHHHHHHHHH
ASGGDGFVSFKNGKDAETGPTDFEALVDYIKKSKEPIQSIIDGRIQKKN
HCCCCCEEEECCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MLKKIIPVALALSTVTFTSVFAVPSAQASTEPNRYIDVQMLGINDFHGQLDTVKKINNKD
CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCC
AGGIEYLGAYLRDREKQNPNTLKVHAGDVVGASTPVSALLQDEPTIEFLNDLKFDVGTIG
CCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHHCCCCHHHHHHHCCCCCCCCC
NHEFDEGVEEMKRLIYGGYHEKTGKFKGAKFPYVAANFYNKSTGRLFLPPFTIKKVQGVP
CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEECCCHHHHCCCCC
VGFIGVVTTDVPNLVMPTMLKNVEITDEVEAINKSVKQLKKLGVKSIVVLAHNGGTTDGN
EEEEEEEECCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCC
GVTNGDIVRLANETDPEVDVIFGGHSHTYVNGTVNNKLVVQANSYGMAFADVDVKIDRKT
CCCCCCEEEECCCCCCCEEEEECCCCEEEEECCCCCEEEEEECCCCEEEEEEEEEECCCH
QDIVEKKAEIVTTYHEGMEPDKKIKKKMEKYQAKIAPLVNEVVGKSIAPLDRKLNTAGES
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCHH
TLGNLVADAQRATMQSQIALMNPGGIRNDLDAGDITWGEIYGIQPFGNQLIKVNLTGQDI
HHHHHHHHHHHHHHHHCEEEECCCCCCCCCCCCCCCHHHEEECCCCCCEEEEEEECCHHH
RDILNQQWQKDITRMLQISGIQYTWDANKPNGEKVTSIHLTNGEEIIPSKTYSVVANAFL
HHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCEEEEEEECCCCEECCCHHHHHHHHHHH
ASGGDGFVSFKNGKDAETGPTDFEALVDYIKKSKEPIQSIIDGRIQKKN
HCCCCCEEEECCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: 5'-ribonucleotide; H2O

Specific reaction: A 5'-ribonucleotide + H2O = a ribonucleoside + phosphate

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8969498; 9384377 [H]