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The map label for this gene is kstR2 [H]

Identifier: 222096415

GI number: 222096415

Start: 2683428

End: 2684018

Strand: Reverse

Name: kstR2 [H]

Synonym: BCQ_2755

Alternate gene names: 222096415

Gene position: 2684018-2683428 (Counterclockwise)

Preceding gene: 222096416

Following gene: 222096414

Centisome position: 51.48

GC content: 31.3

Gene sequence:

>591_bases
ATGAAAAGAATATCGAAAGAACCAGATGTTAGAAGGCAAGAGTTGATGGATATTGGTTTTGAACTATATATGAAAAATGG
TATGAAAGGATTTGGCATAAAAGATGTTGTGAATCATGCTGGTGTAGCAACGGGCTTATTTTATTATTACTTCAAGTCTA
AAGAGAATTTTGTTGATGAAGTATTAAATGATTTTATTGTGAAAAATATGGAGTTAATTGAAGAAATACTTGTTTCTAAT
GAACGGTCTGTCATGCAAAAGCTGAAAGATTCTCTAAATATATTTTGGACATTTATCGAAAAATTAGCGCCTTATAAAAA
TGTGAGTTCGTTTCAGACGGAACAACATTTTCAACTGGAACAGAAATTATTTACGCGAATGCAGCCATTAATTCGACAAG
TAATCGAAGAAGGGGTGAAAACTGGGATTTTTAATATTGATAACTCATTATTAGCATCAGGATTTATTTTATACGGTCTT
AGCAGTATTGCTCATTCAGAGGTGAATTTGAATCTAGACATGAAGCGAGAAATGGTTAATTTAGTATTAAATACACTACG
ATATGATCAAAGAGAAGGAGAATGTATATGA

Upstream 100 bases:

>100_bases
TTACTCTTTTTTTGTGGAAACTAATATTGACTGAATATAGTTCAGTCGTTTATGATTGAATCAGATTCAGTCGAGGGTAA
AACATAGTAGGAGATGACCT

Downstream 100 bases:

>100_bases
AGATCATGATTGATGGAAACAATATTTCGAATGAACAACTTACAAAGTGGAAAAAAGAACGTATGAAAAAAGTTTTCAAT
ACATTAGGACATAAAGAGCC

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 196; Mature: 196

Protein sequence:

>196_residues
MKRISKEPDVRRQELMDIGFELYMKNGMKGFGIKDVVNHAGVATGLFYYYFKSKENFVDEVLNDFIVKNMELIEEILVSN
ERSVMQKLKDSLNIFWTFIEKLAPYKNVSSFQTEQHFQLEQKLFTRMQPLIRQVIEEGVKTGIFNIDNSLLASGFILYGL
SSIAHSEVNLNLDMKREMVNLVLNTLRYDQREGECI

Sequences:

>Translated_196_residues
MKRISKEPDVRRQELMDIGFELYMKNGMKGFGIKDVVNHAGVATGLFYYYFKSKENFVDEVLNDFIVKNMELIEEILVSN
ERSVMQKLKDSLNIFWTFIEKLAPYKNVSSFQTEQHFQLEQKLFTRMQPLIRQVIEEGVKTGIFNIDNSLLASGFILYGL
SSIAHSEVNLNLDMKREMVNLVLNTLRYDQREGECI
>Mature_196_residues
MKRISKEPDVRRQELMDIGFELYMKNGMKGFGIKDVVNHAGVATGLFYYYFKSKENFVDEVLNDFIVKNMELIEEILVSN
ERSVMQKLKDSLNIFWTFIEKLAPYKNVSSFQTEQHFQLEQKLFTRMQPLIRQVIEEGVKTGIFNIDNSLLASGFILYGL
SSIAHSEVNLNLDMKREMVNLVLNTLRYDQREGECI

Specific function: Controls the expression of a small regulon that may play a role in the utilization of cholesterol [H]

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 22881; Mature: 22881

Theoretical pI: Translated: 5.79; Mature: 5.79

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRISKEPDVRRQELMDIGFELYMKNGMKGFGIKDVVNHAGVATGLFYYYFKSKENFVDE
CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHH
VLNDFIVKNMELIEEILVSNERSVMQKLKDSLNIFWTFIEKLAPYKNVSSFQTEQHFQLE
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
QKLFTRMQPLIRQVIEEGVKTGIFNIDNSLLASGFILYGLSSIAHSEVNLNLDMKREMVN
HHHHHHHHHHHHHHHHHHHHHCHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
LVLNTLRYDQREGECI
HHHHHHHHHCCCCCCC
>Mature Secondary Structure
MKRISKEPDVRRQELMDIGFELYMKNGMKGFGIKDVVNHAGVATGLFYYYFKSKENFVDE
CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHH
VLNDFIVKNMELIEEILVSNERSVMQKLKDSLNIFWTFIEKLAPYKNVSSFQTEQHFQLE
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
QKLFTRMQPLIRQVIEEGVKTGIFNIDNSLLASGFILYGLSSIAHSEVNLNLDMKREMVN
HHHHHHHHHHHHHHHHHHHHHCHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
LVLNTLRYDQREGECI
HHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA