Click here to switch to the map view.

The map label for this gene is ccdC [H]

Identifier: 222096398

GI number: 222096398

Start: 2672453

End: 2672932

Strand: Reverse

Name: ccdC [H]

Synonym: BCQ_2738

Alternate gene names: 222096398

Gene position: 2672932-2672453 (Counterclockwise)

Preceding gene: 222096399

Following gene: 222096397

Centisome position: 51.26

GC content: 34.17

Gene sequence:

>480_bases
ATGGGAGACACATCTTCACTCATTACAGTCTTTTTAGGCATTGCACTATTAATATTCTGGCGTCGTTATCGCTCCATGCA
TAAGCCAATAAAGGGATCAGGAAAACGTATTTTATGGCCGTTATTATTTTTAACACCAGGTGTTGTATGGTTTTTTGGTC
CAGTACATCCAGCTATATTACAAGTAGTTATAGCGGTATTCATTGGGGTACTTTTCTCTATGCCGCTTATAGTATTAACA
AATTATGAACGAAGAGATGATGGGAATATTTATACGAAAAAAAGTGCTGTCTTTTTAATTACTTTTATTGCACTTGTCGT
TTTAAGGTATGGATCAAGACAATTTATTGTGGATTTAGATCAACAAACGGTTGGTTTATTATTTTACGTAGTTGCGGTAT
CGTATATCATTCCGTGGAGAATTGCTTGTTATATAAAGTTTAGGAAAGTTTGGCGGGAAAATAGTAATCATACTATATGA

Upstream 100 bases:

>100_bases
TGTCCTTTATATCATAACTAGTAGTATATTTATTCGTAAAGTATCATTCGAAAAAACGATTTGAAATATTATTAGATTAC
TATAGAGAGAAGGGTAGCAA

Downstream 100 bases:

>100_bases
AAACTTCTCATTTGAGAAGTTTTTTATTTTTATAGGTAAGTAAAATAATTTGTTGAAGTGCAAGATTGTTATAGAATATG
ATACATATTAAAATAAGGGA

Product: ccdc protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 159; Mature: 158

Protein sequence:

>159_residues
MGDTSSLITVFLGIALLIFWRRYRSMHKPIKGSGKRILWPLLFLTPGVVWFFGPVHPAILQVVIAVFIGVLFSMPLIVLT
NYERRDDGNIYTKKSAVFLITFIALVVLRYGSRQFIVDLDQQTVGLLFYVVAVSYIIPWRIACYIKFRKVWRENSNHTI

Sequences:

>Translated_159_residues
MGDTSSLITVFLGIALLIFWRRYRSMHKPIKGSGKRILWPLLFLTPGVVWFFGPVHPAILQVVIAVFIGVLFSMPLIVLT
NYERRDDGNIYTKKSAVFLITFIALVVLRYGSRQFIVDLDQQTVGLLFYVVAVSYIIPWRIACYIKFRKVWRENSNHTI
>Mature_158_residues
GDTSSLITVFLGIALLIFWRRYRSMHKPIKGSGKRILWPLLFLTPGVVWFFGPVHPAILQVVIAVFIGVLFSMPLIVLTN
YERRDDGNIYTKKSAVFLITFIALVVLRYGSRQFIVDLDQQTVGLLFYVVAVSYIIPWRIACYIKFRKVWRENSNHTI

Specific function: Unknown

COG id: COG4846

COG function: function code O; Membrane protein involved in cytochrome C biogenesis

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009916 [H]

Pfam domain/function: PF07301 DUF1453 [H]

EC number: NA

Molecular weight: Translated: 18382; Mature: 18251

Theoretical pI: Translated: 10.72; Mature: 10.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGDTSSLITVFLGIALLIFWRRYRSMHKPIKGSGKRILWPLLFLTPGVVWFFGPVHPAIL
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCHHHHHHCCCCHHHH
QVVIAVFIGVLFSMPLIVLTNYERRDDGNIYTKKSAVFLITFIALVVLRYGSRQFIVDLD
HHHHHHHHHHHHHCHHHHHCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHCCCCEEEEECC
QQTVGLLFYVVAVSYIIPWRIACYIKFRKVWRENSNHTI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
GDTSSLITVFLGIALLIFWRRYRSMHKPIKGSGKRILWPLLFLTPGVVWFFGPVHPAIL
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCHHHHHHCCCCHHHH
QVVIAVFIGVLFSMPLIVLTNYERRDDGNIYTKKSAVFLITFIALVVLRYGSRQFIVDLD
HHHHHHHHHHHHHCHHHHHCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHCCCCEEEEECC
QQTVGLLFYVVAVSYIIPWRIACYIKFRKVWRENSNHTI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9068642; 8969507; 9384377 [H]