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The map label for this gene is ywqM [H]

Identifier: 222096014

GI number: 222096014

Start: 2317821

End: 2318693

Strand: Reverse

Name: ywqM [H]

Synonym: BCQ_2354

Alternate gene names: 222096014

Gene position: 2318693-2317821 (Counterclockwise)

Preceding gene: 222096018

Following gene: 222096009

Centisome position: 44.47

GC content: 32.99

Gene sequence:

>873_bases
ATGGAAATGAGACATGTTAAAACATTTTGTGCGATTGTTAAGTATGGTAGTTTTTCTAAAGCTGCTCATGCATTAGGTTA
TGCGCAATCTACAGTTACAGCGCATATGAAAGCATTAGAGAACGATTTACATATTCCTCTTTTCGATCGGTTAGGAAAAA
AAGTACTTCTTACAAAAGCAGGTCATCAATTTCATCCTTATGCTTTAGAGTTACTTGCAATTTATGAAAAGGCGCAAGAA
ATCCCTCAAAATACCGATCAATTAGAAGGTACATTGAGTATTACATCAAACGAATCATTAGCAGTATATCGTTTACCACA
ATTATTACGTACTTACAAACAGAAAAATCCGAAAGTAAATATCGTACTTGAAACAAACACAAATGAACAAGCATTACAAA
AATTACGTGAAGGAGAAACAGACGTTGTCTTCATAATTGGAGAAAGTATAGAACATAATGATTTTATTACACGTACTTTT
AGTAATGAAACATTTGGATGGATTTTACCTCCCCATTACTGTATACACTCTAACCCATTTTATTTATTAAAGGATACTCA
GTTTATTTTTACCGAACAAAGCTGCGGTTATAGACCAATGGTAGATCGTTTTTTACGTCAAAGCGGGAATATTCCAGCTA
AAACATTTGAAACGTCCAACGTTGAAGTTATTAAACAATCTGTTATGTGTGAGTTAGGAATTTCAATTCTTCCTTACATC
GTTGTACAAGAAAGTTGTCAAAAAGAGCAACTCTGTTTTCAGCCTATTGAAACTCCAACAGTTATTCAAAGCCATGTAAT
CTATCATAAATCTAGATGGATTTCCCCTGTAGTACAGTCGTTTCTTTCACTATTAAAGGTTATGAAAGTATAA

Upstream 100 bases:

>100_bases
TATTTCTACAATTTCATTTTATAAGGAATTTAATCATTTGGAAAATTGAAATACGTGATATAATCATTCACAAATCATGA
TAATAAAAGAGGGATTGCTT

Downstream 100 bases:

>100_bases
AATAATATGAAAGAAAACATGAGTTGAAATCCTTTAAAGAATATCAACCCACGTTTTCTTTACTACCACTTATATAGTCA
TCTTCTTTTTATTAGGTGAT

Product: transcriptional regulator, lysr family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 290; Mature: 290

Protein sequence:

>290_residues
MEMRHVKTFCAIVKYGSFSKAAHALGYAQSTVTAHMKALENDLHIPLFDRLGKKVLLTKAGHQFHPYALELLAIYEKAQE
IPQNTDQLEGTLSITSNESLAVYRLPQLLRTYKQKNPKVNIVLETNTNEQALQKLREGETDVVFIIGESIEHNDFITRTF
SNETFGWILPPHYCIHSNPFYLLKDTQFIFTEQSCGYRPMVDRFLRQSGNIPAKTFETSNVEVIKQSVMCELGISILPYI
VVQESCQKEQLCFQPIETPTVIQSHVIYHKSRWISPVVQSFLSLLKVMKV

Sequences:

>Translated_290_residues
MEMRHVKTFCAIVKYGSFSKAAHALGYAQSTVTAHMKALENDLHIPLFDRLGKKVLLTKAGHQFHPYALELLAIYEKAQE
IPQNTDQLEGTLSITSNESLAVYRLPQLLRTYKQKNPKVNIVLETNTNEQALQKLREGETDVVFIIGESIEHNDFITRTF
SNETFGWILPPHYCIHSNPFYLLKDTQFIFTEQSCGYRPMVDRFLRQSGNIPAKTFETSNVEVIKQSVMCELGISILPYI
VVQESCQKEQLCFQPIETPTVIQSHVIYHKSRWISPVVQSFLSLLKVMKV
>Mature_290_residues
MEMRHVKTFCAIVKYGSFSKAAHALGYAQSTVTAHMKALENDLHIPLFDRLGKKVLLTKAGHQFHPYALELLAIYEKAQE
IPQNTDQLEGTLSITSNESLAVYRLPQLLRTYKQKNPKVNIVLETNTNEQALQKLREGETDVVFIIGESIEHNDFITRTF
SNETFGWILPPHYCIHSNPFYLLKDTQFIFTEQSCGYRPMVDRFLRQSGNIPAKTFETSNVEVIKQSVMCELGISILPYI
VVQESCQKEQLCFQPIETPTVIQSHVIYHKSRWISPVVQSFLSLLKVMKV

Specific function: Unknown

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082132, Length=294, Percent_Identity=28.2312925170068, Blast_Score=122, Evalue=3e-29,
Organism=Escherichia coli, GI1788481, Length=284, Percent_Identity=27.112676056338, Blast_Score=108, Evalue=3e-25,
Organism=Escherichia coli, GI1787806, Length=288, Percent_Identity=23.6111111111111, Blast_Score=95, Evalue=4e-21,
Organism=Escherichia coli, GI1788748, Length=244, Percent_Identity=22.9508196721311, Blast_Score=84, Evalue=8e-18,
Organism=Escherichia coli, GI1788887, Length=291, Percent_Identity=25.085910652921, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI157672245, Length=291, Percent_Identity=22.3367697594502, Blast_Score=81, Evalue=6e-17,
Organism=Escherichia coli, GI1790208, Length=293, Percent_Identity=24.9146757679181, Blast_Score=81, Evalue=7e-17,
Organism=Escherichia coli, GI1787879, Length=303, Percent_Identity=26.4026402640264, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1790399, Length=263, Percent_Identity=23.574144486692, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI145693105, Length=299, Percent_Identity=26.0869565217391, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787601, Length=181, Percent_Identity=27.0718232044199, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1790783, Length=300, Percent_Identity=24.3333333333333, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1787530, Length=281, Percent_Identity=20.2846975088968, Blast_Score=61, Evalue=1e-10,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33225; Mature: 33225

Theoretical pI: Translated: 7.89; Mature: 7.89

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEMRHVKTFCAIVKYGSFSKAAHALGYAQSTVTAHMKALENDLHIPLFDRLGKKVLLTKA
CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCEEEEECC
GHQFHPYALELLAIYEKAQEIPQNTDQLEGTLSITSNESLAVYRLPQLLRTYKQKNPKVN
CCCCCHHHHHHHHHHHHHHHCCCCHHHCCEEEEEECCCCEEEHHHHHHHHHHHHCCCCEE
IVLETNTNEQALQKLREGETDVVFIIGESIEHNDFITRTFSNETFGWILPPHYCIHSNPF
EEEECCCCHHHHHHHHCCCCCEEEEEECCCCCCCCEEEEECCCCCEEECCCCEEECCCCE
YLLKDTQFIFTEQSCGYRPMVDRFLRQSGNIPAKTFETSNVEVIKQSVMCELGISILPYI
EEEECCEEEEECCCCCCCHHHHHHHHHCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHH
VVQESCQKEQLCFQPIETPTVIQSHVIYHKSRWISPVVQSFLSLLKVMKV
HHHHHCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MEMRHVKTFCAIVKYGSFSKAAHALGYAQSTVTAHMKALENDLHIPLFDRLGKKVLLTKA
CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCEEEEECC
GHQFHPYALELLAIYEKAQEIPQNTDQLEGTLSITSNESLAVYRLPQLLRTYKQKNPKVN
CCCCCHHHHHHHHHHHHHHHCCCCHHHCCEEEEEECCCCEEEHHHHHHHHHHHHCCCCEE
IVLETNTNEQALQKLREGETDVVFIIGESIEHNDFITRTFSNETFGWILPPHYCIHSNPF
EEEECCCCHHHHHHHHCCCCCEEEEEECCCCCCCCEEEEECCCCCEEECCCCEEECCCCE
YLLKDTQFIFTEQSCGYRPMVDRFLRQSGNIPAKTFETSNVEVIKQSVMCELGISILPYI
EEEECCEEEEECCCCCCCHHHHHHHHHCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHH
VVQESCQKEQLCFQPIETPTVIQSHVIYHKSRWISPVVQSFLSLLKVMKV
HHHHHCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9353933; 9384377 [H]