Click here to switch to the map view.

The map label for this gene is oppC [C]

Identifier: 222095864

GI number: 222095864

Start: 2176605

End: 2177624

Strand: Reverse

Name: oppC [C]

Synonym: BCQ_2204

Alternate gene names: 222095864

Gene position: 2177624-2176605 (Counterclockwise)

Preceding gene: 222095865

Following gene: 222095856

Centisome position: 41.76

GC content: 33.04

Gene sequence:

>1020_bases
ATGAAATCTATTTGGAAATCAAAACGCTTTTTAATCGGCTTTACTTATTTATTTATACTTATTTCAGCCAGTTTTATTTA
TAGTTGGTTCTTTAAAGATAACATCCCAAAACCTCCTCAGTTACTTTACAATGACAATAACGAATTACTTGGAAAGGCCC
CCTTTCCGCCATCGTTAATTCCGCCTTTTGGATCTGATCGTTTTGGAGAGTCTGTTTTCTTACAAATTATAGAAGGAGCA
AAATTTACTATTTTATTAGCCGTGGCAATTAGCTTCTTTCGAATTTTATGCGGAACATGTATAGGAATTCTCTTAAGTTT
ATATGCTCCAAAATTCAAGAGATTTTTCCAAGCATGCTCAGAAGTTTTTTATTATATTCCAACTCTATTTATCGCATTCA
TACTCATCACGCCCGTTAATATTGTAATCACATCAAATGCTGATGGGTTAGATCCAAATATTTCATTTACGTTTTATCAA
GTACTCGTACTTATTTTCGTTGCTCTGCCTACACTTTCTTTATATATATCCTCAGAGGTTGATGAATTTATGAAACGAGA
TTACATTTTAAGTGCACAATTATTAGGTGCTAGCCGTTTTCATATTATGAAAAAACACTTACGAGTCTTATTACTTGACC
GCTTATTTGTATTATTTATGGAACATATCGTCCAAACACTCATACTCGTTATCCATTTAGCGTTGCTTAACATTGTAATT
GGTGGGATACAAATGCGTGAACTGTATGACGGAGTGCTCAAACCTGTTTCTCTATCTAATGATTGGGCAGGCCTTATTGG
CTTAAATCGTAATGAAATGAATCTTTCATGGTGGATCATTTTTTATACTCTCGCTTCATTCTTTATTACGATTCTATTTA
TTAAGCTTATGACACTCGGGATTCAAGATGCACTGAAAGCAAGAGATTCGCAAACTGTAGCAATTCAAACCGTTCCTGAT
CATAAAAAATTTGTTAAACATAAAGATTCTTTTTCTTTTGCAAATAAAGTGAACCTTTAA

Upstream 100 bases:

>100_bases
TTATCATACTGGTTATGATTATCTTACCGTTTTATACTATTTTTCAAATAATCTCATTCATGATGAATAGATGGCAAAAG
CACTTGAAAGGAGTAGCATT

Downstream 100 bases:

>100_bases
TCCTGTCTCATTAATCAAGTATGGATTGGCATTGATATTAGTAGAATATAAAAAAGATGATCCCTATTGCATACAGGGAT
CATCTTTTTATGCAGTCTAA

Product: oligopeptide transporter, permease

Products: NA

Alternate protein names: Peptide ABC Transporter Permease; Oligopeptide Transport System Permease Protein AppC; Oligopeptide Transport System Permease; Oligopeptide Permease OppC; Dipeptide Transport System Permease; Oligopeptide Transport System Permease Protein OppC; ABC-Type Transport System Permease Protein; Oligopeptide Transport System Permease Protein-Like Protein

Number of amino acids: Translated: 339; Mature: 339

Protein sequence:

>339_residues
MKSIWKSKRFLIGFTYLFILISASFIYSWFFKDNIPKPPQLLYNDNNELLGKAPFPPSLIPPFGSDRFGESVFLQIIEGA
KFTILLAVAISFFRILCGTCIGILLSLYAPKFKRFFQACSEVFYYIPTLFIAFILITPVNIVITSNADGLDPNISFTFYQ
VLVLIFVALPTLSLYISSEVDEFMKRDYILSAQLLGASRFHIMKKHLRVLLLDRLFVLFMEHIVQTLILVIHLALLNIVI
GGIQMRELYDGVLKPVSLSNDWAGLIGLNRNEMNLSWWIIFYTLASFFITILFIKLMTLGIQDALKARDSQTVAIQTVPD
HKKFVKHKDSFSFANKVNL

Sequences:

>Translated_339_residues
MKSIWKSKRFLIGFTYLFILISASFIYSWFFKDNIPKPPQLLYNDNNELLGKAPFPPSLIPPFGSDRFGESVFLQIIEGA
KFTILLAVAISFFRILCGTCIGILLSLYAPKFKRFFQACSEVFYYIPTLFIAFILITPVNIVITSNADGLDPNISFTFYQ
VLVLIFVALPTLSLYISSEVDEFMKRDYILSAQLLGASRFHIMKKHLRVLLLDRLFVLFMEHIVQTLILVIHLALLNIVI
GGIQMRELYDGVLKPVSLSNDWAGLIGLNRNEMNLSWWIIFYTLASFFITILFIKLMTLGIQDALKARDSQTVAIQTVPD
HKKFVKHKDSFSFANKVNL
>Mature_339_residues
MKSIWKSKRFLIGFTYLFILISASFIYSWFFKDNIPKPPQLLYNDNNELLGKAPFPPSLIPPFGSDRFGESVFLQIIEGA
KFTILLAVAISFFRILCGTCIGILLSLYAPKFKRFFQACSEVFYYIPTLFIAFILITPVNIVITSNADGLDPNISFTFYQ
VLVLIFVALPTLSLYISSEVDEFMKRDYILSAQLLGASRFHIMKKHLRVLLLDRLFVLFMEHIVQTLILVIHLALLNIVI
GGIQMRELYDGVLKPVSLSNDWAGLIGLNRNEMNLSWWIIFYTLASFFITILFIKLMTLGIQDALKARDSQTVAIQTVPD
HKKFVKHKDSFSFANKVNL

Specific function: Probably Part Of The Binding-Protein-Dependent Transport System Yddopqrs. Probably Responsible For The Translocation Of The Substrate Across The Membrane. [C]

COG id: COG1173

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787760, Length=277, Percent_Identity=22.0216606498195, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 38782; Mature: 38782

Theoretical pI: Translated: 9.66; Mature: 9.66

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSIWKSKRFLIGFTYLFILISASFIYSWFFKDNIPKPPQLLYNDNNELLGKAPFPPSLI
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCEEECCCCCCCCC
PPFGSDRFGESVFLQIIEGAKFTILLAVAISFFRILCGTCIGILLSLYAPKFKRFFQACS
CCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EVFYYIPTLFIAFILITPVNIVITSNADGLDPNISFTFYQVLVLIFVALPTLSLYISSEV
HHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
DEFMKRDYILSAQLLGASRFHIMKKHLRVLLLDRLFVLFMEHIVQTLILVIHLALLNIVI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GGIQMRELYDGVLKPVSLSNDWAGLIGLNRNEMNLSWWIIFYTLASFFITILFIKLMTLG
CCHHHHHHHHHHHCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
IQDALKARDSQTVAIQTVPDHKKFVKHKDSFSFANKVNL
HHHHHHCCCCCEEEEEECCCHHHHHHCCCCCCCHHCCCC
>Mature Secondary Structure
MKSIWKSKRFLIGFTYLFILISASFIYSWFFKDNIPKPPQLLYNDNNELLGKAPFPPSLI
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCEEECCCCCCCCC
PPFGSDRFGESVFLQIIEGAKFTILLAVAISFFRILCGTCIGILLSLYAPKFKRFFQACS
CCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EVFYYIPTLFIAFILITPVNIVITSNADGLDPNISFTFYQVLVLIFVALPTLSLYISSEV
HHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
DEFMKRDYILSAQLLGASRFHIMKKHLRVLLLDRLFVLFMEHIVQTLILVIHLALLNIVI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GGIQMRELYDGVLKPVSLSNDWAGLIGLNRNEMNLSWWIIFYTLASFFITILFIKLMTLG
CCHHHHHHHHHHHCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
IQDALKARDSQTVAIQTVPDHKKFVKHKDSFSFANKVNL
HHHHHHCCCCCEEEEEECCCHHHHHHCCCCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA