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The map label for this gene is sigW [H]

Identifier: 222095751

GI number: 222095751

Start: 2061273

End: 2061851

Strand: Direct

Name: sigW [H]

Synonym: BCQ_2091

Alternate gene names: 222095751

Gene position: 2061273-2061851 (Clockwise)

Preceding gene: 222095748

Following gene: 222095752

Centisome position: 39.53

GC content: 31.61

Gene sequence:

>579_bases
ATGAAGGATGAAACAGTGTATACAGATTTAATCCAATTAACTTTATCGGGAAATAAAGAAGCGTATAGCGAATTGTATGA
TGTAACGATTCAAGAAGTATATAAAACAGCACATTTTTTAATAGATGATAAAACGGATGTAGATGATGTCGTTCAAGAAA
TATACATACAGCTATATGAATCGCTTCGTAAGTATGATAGCGAGAAGCCATTTCGTCCTTGGCTAATTGGACTTGTAATT
AAACAAATTCACTCTTATAGAAGAAAGAGGTGGATGCGACTACGAATTATAAAAAAAGCAGAAGAGCAGAGAAAACCGGT
ACAAATTGATTTTTCTAACGATGTTGTAAGTAAAATATCAAATCAAAAGCTAATCGAACTTATTCATAAATTACCGTATA
AATTGAAACAAGTTATTATTTTAAGATACTTGCACGACTACTCACAAGAAGAAGTAGCAGAAATATTACATATTCCAATT
GGTACTGTGAAATCTAGAATTCATTCAGCCTTAAAGAAACTACGTCAAAAAGAGCAAGTAGAAGAAATCTTTTTAGGAGA
GGTAGGGAATGTGAAATGA

Upstream 100 bases:

>100_bases
GAATCATTATATTAATCTATATAAAAAATTTTTTTGAAAAAATCGAACGAAATATGGATTACTTGCCAATATATAGTGTA
AGACAAAGGAGGGATGGTAT

Downstream 100 bases:

>100_bases
GTTTAGATTGTAGAGTTCGAGAATCTATACAAGAAGAAGCGAAGGGGATTGTTGCGCCGCCGGAGTTGAAAGAAAAAGTA
ATCGTTCAAATAAAAATGAA

Product: RNA polymerase sigma factor

Products: NA

Alternate protein names: Sigma-W factor [H]

Number of amino acids: Translated: 192; Mature: 192

Protein sequence:

>192_residues
MKDETVYTDLIQLTLSGNKEAYSELYDVTIQEVYKTAHFLIDDKTDVDDVVQEIYIQLYESLRKYDSEKPFRPWLIGLVI
KQIHSYRRKRWMRLRIIKKAEEQRKPVQIDFSNDVVSKISNQKLIELIHKLPYKLKQVIILRYLHDYSQEEVAEILHIPI
GTVKSRIHSALKKLRQKEQVEEIFLGEVGNVK

Sequences:

>Translated_192_residues
MKDETVYTDLIQLTLSGNKEAYSELYDVTIQEVYKTAHFLIDDKTDVDDVVQEIYIQLYESLRKYDSEKPFRPWLIGLVI
KQIHSYRRKRWMRLRIIKKAEEQRKPVQIDFSNDVVSKISNQKLIELIHKLPYKLKQVIILRYLHDYSQEEVAEILHIPI
GTVKSRIHSALKKLRQKEQVEEIFLGEVGNVK
>Mature_192_residues
MKDETVYTDLIQLTLSGNKEAYSELYDVTIQEVYKTAHFLIDDKTDVDDVVQEIYIQLYESLRKYDSEKPFRPWLIGLVI
KQIHSYRRKRWMRLRIIKKAEEQRKPVQIDFSNDVVSKISNQKLIELIHKLPYKLKQVIILRYLHDYSQEEVAEILHIPI
GTVKSRIHSALKKLRQKEQVEEIFLGEVGNVK

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. Sigma-W controls genes involved in transport processes and detoxification [H]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788926, Length=142, Percent_Identity=30.9859154929577, Blast_Score=63, Evalue=1e-11,

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014294
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 22857; Mature: 22857

Theoretical pI: Translated: 9.31; Mature: 9.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKDETVYTDLIQLTLSGNKEAYSELYDVTIQEVYKTAHFLIDDKTDVDDVVQEIYIQLYE
CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
SLRKYDSEKPFRPWLIGLVIKQIHSYRRKRWMRLRIIKKAEEQRKPVQIDFSNDVVSKIS
HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHC
NQKLIELIHKLPYKLKQVIILRYLHDYSQEEVAEILHIPIGTVKSRIHSALKKLRQKEQV
CHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
EEIFLGEVGNVK
HHHHHCCCCCCC
>Mature Secondary Structure
MKDETVYTDLIQLTLSGNKEAYSELYDVTIQEVYKTAHFLIDDKTDVDDVVQEIYIQLYE
CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
SLRKYDSEKPFRPWLIGLVIKQIHSYRRKRWMRLRIIKKAEEQRKPVQIDFSNDVVSKIS
HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHC
NQKLIELIHKLPYKLKQVIILRYLHDYSQEEVAEILHIPIGTVKSRIHSALKKLRQKEQV
CHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
EEIFLGEVGNVK
HHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9274029; 9384377; 12207695 [H]