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The map label for this gene is yodJ [H]

Identifier: 222095712

GI number: 222095712

Start: 2030182

End: 2030922

Strand: Direct

Name: yodJ [H]

Synonym: BCQ_2052

Alternate gene names: 222095712

Gene position: 2030182-2030922 (Clockwise)

Preceding gene: 222095711

Following gene: 222095713

Centisome position: 38.94

GC content: 39.68

Gene sequence:

>741_bases
ATGAAAAAAAGATGGATACTACTTGGTATCGTAGCGGCGATACTCATTGTTGGAGTAGCGGGAATCAATTATAAAATGTA
TAAGGATAAGCAAGCGCGCGAGGTGAATGTAAATAACATATTTCCGAAAGCGAAAGAAACGATTGCGAATATGGATGGAG
ATATTGCGGTAATTAGTAATCCGAATTCACTGCTTGTGCTTGTGAATAAAAGTAGGCGTTTACCAGACGGGTATAGACCG
CCAGATTTAGTTATTCCGAAAGTGCGCTATTCTAGTGAAGGTGATCAAGAAAAGAAAAAAATGAGGAAAGAGGCGGCCGG
TGCGCTTGAGGAAATGTTTCAGCAAGCGGATAAGGAGCGTGTTTTCTTATTTGCAGTCTCTGGATTTAGATCTTTTGATC
GGCAAAAAGCGTTAAATACAATGTATAAAAAACAAGATGGAGAAGCCAAAACGGCAATGTCGAGTGCAGTTCCTGGAACG
AGTGAACATCAAACAGGACTAGCTATGGATATCACATCACAATCTGCTAAGTTTCAGTTAGAGACAATTTTTGGTGAAAC
GAAAGAAGGGCAGTGGCTTTCTGAAAATGCCCATAAATTTGGTTTTGTCATTCGATATACAAAAGAGAAAGAATCGATTA
CGGGCTATCGATTTGAACCATGGCACGTGAGGTATGTGGGAAATCCACAAGCTACATATTTATATGAAAATCAACTAACA
CTTGAAGAAGTAGCGCAGTGA

Upstream 100 bases:

>100_bases
GATTTGAGAAAGAAGGTGTCAAAAGAGCTGCTCTTATTATCGATGGAGAGAACATCGATGAGTATGAAATGGCCAAATTA
TTAAAATAAGAGGTCGTTAT

Downstream 100 bases:

>100_bases
ACAATTGAGGGGAGAGAAGGATTATGACGGTGTTATATAAGAAGAAAGTACACGCATATGTGACAAGAGAAAAAGAAGGA
GCTATGCAACTGCTTGTTTT

Product: D-alanyl-D-alanine carboxypeptidase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 246; Mature: 246

Protein sequence:

>246_residues
MKKRWILLGIVAAILIVGVAGINYKMYKDKQAREVNVNNIFPKAKETIANMDGDIAVISNPNSLLVLVNKSRRLPDGYRP
PDLVIPKVRYSSEGDQEKKKMRKEAAGALEEMFQQADKERVFLFAVSGFRSFDRQKALNTMYKKQDGEAKTAMSSAVPGT
SEHQTGLAMDITSQSAKFQLETIFGETKEGQWLSENAHKFGFVIRYTKEKESITGYRFEPWHVRYVGNPQATYLYENQLT
LEEVAQ

Sequences:

>Translated_246_residues
MKKRWILLGIVAAILIVGVAGINYKMYKDKQAREVNVNNIFPKAKETIANMDGDIAVISNPNSLLVLVNKSRRLPDGYRP
PDLVIPKVRYSSEGDQEKKKMRKEAAGALEEMFQQADKERVFLFAVSGFRSFDRQKALNTMYKKQDGEAKTAMSSAVPGT
SEHQTGLAMDITSQSAKFQLETIFGETKEGQWLSENAHKFGFVIRYTKEKESITGYRFEPWHVRYVGNPQATYLYENQLT
LEEVAQ
>Mature_246_residues
MKKRWILLGIVAAILIVGVAGINYKMYKDKQAREVNVNNIFPKAKETIANMDGDIAVISNPNSLLVLVNKSRRLPDGYRP
PDLVIPKVRYSSEGDQEKKKMRKEAAGALEEMFQQADKERVFLFAVSGFRSFDRQKALNTMYKKQDGEAKTAMSSAVPGT
SEHQTGLAMDITSQSAKFQLETIFGETKEGQWLSENAHKFGFVIRYTKEKESITGYRFEPWHVRYVGNPQATYLYENQLT
LEEVAQ

Specific function: Unknown

COG id: COG1876

COG function: function code M; D-alanyl-D-alanine carboxypeptidase

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M15B family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009045
- InterPro:   IPR003709 [H]

Pfam domain/function: PF02557 VanY [H]

EC number: NA

Molecular weight: Translated: 27940; Mature: 27940

Theoretical pI: Translated: 9.76; Mature: 9.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKRWILLGIVAAILIVGVAGINYKMYKDKQAREVNVNNIFPKAKETIANMDGDIAVISN
CCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCEECCHHCCCHHHHHHHCCCCCEEEEEC
PNSLLVLVNKSRRLPDGYRPPDLVIPKVRYSSEGDQEKKKMRKEAAGALEEMFQQADKER
CCEEEEEEECCCCCCCCCCCCCEEECCEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCE
VFLFAVSGFRSFDRQKALNTMYKKQDGEAKTAMSSAVPGTSEHQTGLAMDITSQSAKFQL
EEEEEECCHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCEEEEECCCCCEEEE
ETIFGETKEGQWLSENAHKFGFVIRYTKEKESITGYRFEPWHVRYVGNPQATYLYENQLT
EEECCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEECCCCC
LEEVAQ
HHHHCC
>Mature Secondary Structure
MKKRWILLGIVAAILIVGVAGINYKMYKDKQAREVNVNNIFPKAKETIANMDGDIAVISN
CCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCEECCHHCCCHHHHHHHCCCCCEEEEEC
PNSLLVLVNKSRRLPDGYRPPDLVIPKVRYSSEGDQEKKKMRKEAAGALEEMFQQADKER
CCEEEEEEECCCCCCCCCCCCCEEECCEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCE
VFLFAVSGFRSFDRQKALNTMYKKQDGEAKTAMSSAVPGTSEHQTGLAMDITSQSAKFQL
EEEEEECCHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCEEEEECCCCCEEEE
ETIFGETKEGQWLSENAHKFGFVIRYTKEKESITGYRFEPWHVRYVGNPQATYLYENQLT
EEECCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCEEEEEECCCCEEEEECCCCC
LEEVAQ
HHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9734814; 9384377 [H]