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The map label for this gene is ydiP [H]

Identifier: 222095645

GI number: 222095645

Start: 1963500

End: 1964360

Strand: Reverse

Name: ydiP [H]

Synonym: BCQ_1986

Alternate gene names: 222095645

Gene position: 1964360-1963500 (Counterclockwise)

Preceding gene: 222095658

Following gene: 222095644

Centisome position: 37.67

GC content: 30.31

Gene sequence:

>861_bases
TTGTCCAATGAAGTATATGAGATTCCACAATTTCAACGAAACCATCTTCCAGTAAAACTTCTTTATATTACAAAATCAAA
ATACGATAAAGATTGGCATAGTACCATTCATGCTCATCACTTTACAGAGCTATTGTATATTACTAAGGGCAAAGGCACTT
TTATCTTTTACAAAGAAGAAATCCCTGTTCAAGAACACAATTTGATTATCGTCAATCCAAATATCGAGCACACGGAAAAG
TCTGATACAAATCATCCACTCGAATATATTGCACTTGGTATTCAAGGCCTGTCCTTTTCATCCATAGAAAATCCCAGTCC
TGTCACTATTCATAACTATAAACAGGATCAAAAAAACTTCCTCTTCTACCTTCAGCAATTGGTCGAAGAAGTGGAAAACC
ATCAAGAAGATTATGATTTGATTATACAAAATATTCTGGAAATTTTATTACTTAAGATGATGCGAAAAAAATCTTTTAAT
GTAGAGAAAACATCTACTCAAAAAATTAATAAAGATATTGAATTTATTAAAAACTATATTAAGCAGCATTTTCACGAAAA
TATCAGCCTAGATACATTAGCAAGCATTAGTCATATTAATAAATATTATCTATCCCATTCCTTTAGAAAATTCGTCGGTG
TGTCGCCTATTGAATATTTAATTCAAACTCGTATTAGAGAAAGTAAAATTTTGTTAGAAACTACTAACTATTCGATTTCT
AATATTTCAACCATTACCGGTTTTTCTTCACAATCATTCTTTGCACAATCATTTAAACGAGAAACGAATCTATCTCCTTC
ACAATACAGAAACGCTATAAATTCTAGCAAAAACAAACTAGATTCTAGTGCAAAAATTTAA

Upstream 100 bases:

>100_bases
ATAAACATCTTGTTCTGTTTTTTAGATATCTTGCTTTTTACTGAATATCCCACTAAAATCTTTATAAAATAGATAAAAAT
TCTAAGAAGGAGGGATTCAT

Downstream 100 bases:

>100_bases
AGATAAATGCAATGAATCTATACTTCTTTAATATATTGTTACTACTATTTTGGAAAGAGAGTGTTCCTATGATTCAACAA
TTAAAAACATATTATGGTGA

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 286; Mature: 285

Protein sequence:

>286_residues
MSNEVYEIPQFQRNHLPVKLLYITKSKYDKDWHSTIHAHHFTELLYITKGKGTFIFYKEEIPVQEHNLIIVNPNIEHTEK
SDTNHPLEYIALGIQGLSFSSIENPSPVTIHNYKQDQKNFLFYLQQLVEEVENHQEDYDLIIQNILEILLLKMMRKKSFN
VEKTSTQKINKDIEFIKNYIKQHFHENISLDTLASISHINKYYLSHSFRKFVGVSPIEYLIQTRIRESKILLETTNYSIS
NISTITGFSSQSFFAQSFKRETNLSPSQYRNAINSSKNKLDSSAKI

Sequences:

>Translated_286_residues
MSNEVYEIPQFQRNHLPVKLLYITKSKYDKDWHSTIHAHHFTELLYITKGKGTFIFYKEEIPVQEHNLIIVNPNIEHTEK
SDTNHPLEYIALGIQGLSFSSIENPSPVTIHNYKQDQKNFLFYLQQLVEEVENHQEDYDLIIQNILEILLLKMMRKKSFN
VEKTSTQKINKDIEFIKNYIKQHFHENISLDTLASISHINKYYLSHSFRKFVGVSPIEYLIQTRIRESKILLETTNYSIS
NISTITGFSSQSFFAQSFKRETNLSPSQYRNAINSSKNKLDSSAKI
>Mature_285_residues
SNEVYEIPQFQRNHLPVKLLYITKSKYDKDWHSTIHAHHFTELLYITKGKGTFIFYKEEIPVQEHNLIIVNPNIEHTEKS
DTNHPLEYIALGIQGLSFSSIENPSPVTIHNYKQDQKNFLFYLQQLVEEVENHQEDYDLIIQNILEILLLKMMRKKSFNV
EKTSTQKINKDIEFIKNYIKQHFHENISLDTLASISHINKYYLSHSFRKFVGVSPIEYLIQTRIRESKILLETTNYSISN
ISTITGFSSQSFFAQSFKRETNLSPSQYRNAINSSKNKLDSSAKI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787987, Length=256, Percent_Identity=27.34375, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1786251, Length=164, Percent_Identity=25, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI171474011, Length=255, Percent_Identity=23.5294117647059, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1790339, Length=252, Percent_Identity=21.8253968253968, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1790391, Length=102, Percent_Identity=30.3921568627451, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 33584; Mature: 33452

Theoretical pI: Translated: 8.60; Mature: 8.60

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNEVYEIPQFQRNHLPVKLLYITKSKYDKDWHSTIHAHHFTELLYITKGKGTFIFYKEE
CCCCCCCCCCHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHEEEEEEECCCCEEEEEECC
IPVQEHNLIIVNPNIEHTEKSDTNHPLEYIALGIQGLSFSSIENPSPVTIHNYKQDQKNF
CCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCEEEECCCCHHHHH
LFYLQQLVEEVENHQEDYDLIIQNILEILLLKMMRKKSFNVEKTSTQKINKDIEFIKNYI
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
KQHFHENISLDTLASISHINKYYLSHSFRKFVGVSPIEYLIQTRIRESKILLETTNYSIS
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCEEEEEECCCCCC
NISTITGFSSQSFFAQSFKRETNLSPSQYRNAINSSKNKLDSSAKI
CCCEECCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
SNEVYEIPQFQRNHLPVKLLYITKSKYDKDWHSTIHAHHFTELLYITKGKGTFIFYKEE
CCCCCCCCCHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHEEEEEEECCCCEEEEEECC
IPVQEHNLIIVNPNIEHTEKSDTNHPLEYIALGIQGLSFSSIENPSPVTIHNYKQDQKNF
CCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCEEEECCCCHHHHH
LFYLQQLVEEVENHQEDYDLIIQNILEILLLKMMRKKSFNVEKTSTQKINKDIEFIKNYI
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
KQHFHENISLDTLASISHINKYYLSHSFRKFVGVSPIEYLIQTRIRESKILLETTNYSIS
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCEEEEEECCCCCC
NISTITGFSSQSFFAQSFKRETNLSPSQYRNAINSSKNKLDSSAKI
CCCEECCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]