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The map label for this gene is pdaA [H]

Identifier: 222095612

GI number: 222095612

Start: 1933179

End: 1934006

Strand: Direct

Name: pdaA [H]

Synonym: BCQ_1952

Alternate gene names: 222095612

Gene position: 1933179-1934006 (Clockwise)

Preceding gene: 222095611

Following gene: 222095613

Centisome position: 37.08

GC content: 37.32

Gene sequence:

>828_bases
ATGTATTATTTTTATTCGCCACAAATGTTTGCTCCATATCAATGGGGACTAGAACGAGATGTTTCGTATGCTTATATGCC
ATATAACTCATTTTACTATGGAGACTATATAAACTCATTGCCATACGCATATATCCCTCAAAATTATGAAGTACAAATGA
AAGCAGATGATCGTGGATCGTGGACGCCATTTTCTTGGGTTGAAAAATATGCGTACGCATTTTCAGGACCGTACAATAAA
GCGGAAGTTGCTCTTACATTTGATGATGGACCGGATTTAGAATTCACGCCAAAAATATTAGATAAGTTAAAACAACATAA
TGTAAAAGCGACTTTTTTCCTGCTTGGTGAAAATGCTGAAAAGTTTCCAAATGTAGTAAAGCGTATTGCGAATGAAGGGC
ATGTAATTGGTAATCATACGTATAGCCATCCTAATTTAGCGAAAGTAAATGAGGGTGAGTACCGTAATCAAATTATAAAA
ACGGAAGAAATATTAAAACGTATAGCCGGCTATGCTCCTAAATTTATACGCCCGCCGTATGGTGAAATACTTGAAAATCA
ATTGAAGTGGGCAACTGAGCAAAATTTTATGATTGTACAGTGGAGTGTTGATACGGTTGATTGGAAAGGGGTAAGTGCTG
ATACGATTACAAATAATGTGTTAGGGAACTCATTCCCTGGTAGTATCATACTTCAACATTCAACTCCAGGTGGACATTTG
CAAGGATCTGTAGAGGCGCTAGACAAAATGATTCCGCAGTTAAAAACGAAAGGAGCACGTTTTGTAACACTTCCAAGCAT
GTTTCAGACATCGAAAGAGCGAAAGTGA

Upstream 100 bases:

>100_bases
ACTGTCCAAATTACGGACAGTCTTATTTTTGTTTATGAATAACAATTTCTCTAACAAAGTGTAGAGGAATCACATATGAA
ATTTTAGGGAGGTTTTTATC

Downstream 100 bases:

>100_bases
ATGCGTTGTAGAATTGGAAAAAACAGGATTGCATCGTATAATGAAGCTGTTAGGAGGGGATATAATTGATGTATACACTA
ATAAACATAGGAATGAGTAT

Product: polysaccharide deacetylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 275; Mature: 275

Protein sequence:

>275_residues
MYYFYSPQMFAPYQWGLERDVSYAYMPYNSFYYGDYINSLPYAYIPQNYEVQMKADDRGSWTPFSWVEKYAYAFSGPYNK
AEVALTFDDGPDLEFTPKILDKLKQHNVKATFFLLGENAEKFPNVVKRIANEGHVIGNHTYSHPNLAKVNEGEYRNQIIK
TEEILKRIAGYAPKFIRPPYGEILENQLKWATEQNFMIVQWSVDTVDWKGVSADTITNNVLGNSFPGSIILQHSTPGGHL
QGSVEALDKMIPQLKTKGARFVTLPSMFQTSKERK

Sequences:

>Translated_275_residues
MYYFYSPQMFAPYQWGLERDVSYAYMPYNSFYYGDYINSLPYAYIPQNYEVQMKADDRGSWTPFSWVEKYAYAFSGPYNK
AEVALTFDDGPDLEFTPKILDKLKQHNVKATFFLLGENAEKFPNVVKRIANEGHVIGNHTYSHPNLAKVNEGEYRNQIIK
TEEILKRIAGYAPKFIRPPYGEILENQLKWATEQNFMIVQWSVDTVDWKGVSADTITNNVLGNSFPGSIILQHSTPGGHL
QGSVEALDKMIPQLKTKGARFVTLPSMFQTSKERK
>Mature_275_residues
MYYFYSPQMFAPYQWGLERDVSYAYMPYNSFYYGDYINSLPYAYIPQNYEVQMKADDRGSWTPFSWVEKYAYAFSGPYNK
AEVALTFDDGPDLEFTPKILDKLKQHNVKATFFLLGENAEKFPNVVKRIANEGHVIGNHTYSHPNLAKVNEGEYRNQIIK
TEEILKRIAGYAPKFIRPPYGEILENQLKWATEQNFMIVQWSVDTVDWKGVSADTITNNVLGNSFPGSIILQHSTPGGHL
QGSVEALDKMIPQLKTKGARFVTLPSMFQTSKERK

Specific function: Unknown

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide deacetylase family [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6323339, Length=207, Percent_Identity=31.8840579710145, Blast_Score=91, Evalue=2e-19,
Organism=Saccharomyces cerevisiae, GI6323338, Length=134, Percent_Identity=36.5671641791045, Blast_Score=87, Evalue=3e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR021729
- InterPro:   IPR011330
- InterPro:   IPR017219
- InterPro:   IPR002509 [H]

Pfam domain/function: PF11738 DUF3298; PF01522 Polysacc_deac_1 [H]

EC number: NA

Molecular weight: Translated: 31639; Mature: 31639

Theoretical pI: Translated: 7.18; Mature: 7.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYYFYSPQMFAPYQWGLERDVSYAYMPYNSFYYGDYINSLPYAYIPQNYEVQMKADDRGS
CEEEECCCCCCCHHCCCCCCCEEEEECCCCEEECHHHHCCCCEECCCCCEEEEEECCCCC
WTPFSWVEKYAYAFSGPYNKAEVALTFDDGPDLEFTPKILDKLKQHNVKATFFLLGENAE
CCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCEECHHHHHHHHHCCCEEEEEEECCCHH
KFPNVVKRIANEGHVIGNHTYSHPNLAKVNEGEYRNQIIKTEEILKRIAGYAPKFIRPPY
HHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCH
GEILENQLKWATEQNFMIVQWSVDTVDWKGVSADTITNNVLGNSFPGSIILQHSTPGGHL
HHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCHHHHHHCCCCCCCCCCEEEEECCCCCCC
QGSVEALDKMIPQLKTKGARFVTLPSMFQTSKERK
CCHHHHHHHHHHHHHHCCCEEEECHHHHHHHCCCC
>Mature Secondary Structure
MYYFYSPQMFAPYQWGLERDVSYAYMPYNSFYYGDYINSLPYAYIPQNYEVQMKADDRGS
CEEEECCCCCCCHHCCCCCCCEEEEECCCCEEECHHHHCCCCEECCCCCEEEEEECCCCC
WTPFSWVEKYAYAFSGPYNKAEVALTFDDGPDLEFTPKILDKLKQHNVKATFFLLGENAE
CCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCEECHHHHHHHHHCCCEEEEEEECCCHH
KFPNVVKRIANEGHVIGNHTYSHPNLAKVNEGEYRNQIIKTEEILKRIAGYAPKFIRPPY
HHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCH
GEILENQLKWATEQNFMIVQWSVDTVDWKGVSADTITNNVLGNSFPGSIILQHSTPGGHL
HHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCHHHHHHCCCCCCCCCCEEEEECCCCCCC
QGSVEALDKMIPQLKTKGARFVTLPSMFQTSKERK
CCHHHHHHHHHHHHHHCCCEEEECHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9579062; 9384377 [H]