Click here to switch to the map view.

The map label for this gene is yofA [H]

Identifier: 222095582

GI number: 222095582

Start: 1902346

End: 1903134

Strand: Reverse

Name: yofA [H]

Synonym: BCQ_1922

Alternate gene names: 222095582

Gene position: 1903134-1902346 (Counterclockwise)

Preceding gene: 222095598

Following gene: 222095574

Centisome position: 36.5

GC content: 30.29

Gene sequence:

>789_bases
ATGGAAATAAATGATCTTATTATATTCAAAACTGTGGCTAGCGAAGGCTCTATTAGTAAAGCTGCGAAAGAGTTAGGGTA
TGTTCAACCGAACGTAACTGAGCGAATTAAAAAATTAGAACAAGAGTTAGAAACACCTTTACTACATAGAGATAACAAAG
GCGTTTCTTTATTACCTTCTGGTGACATTTTATTAGACTACACAAATCAAATATTAACGCTAGTAGAAGAAGCAAAAGAT
AAAATTAAAACGAGTGGGTCTTCTTATATAATCGCAACGTCACAATCTATTTTGACTAATTATGTAAGCAAGCGCATTAA
AGAAAATTTTAGGAGTTATCAAATATATGTAGAAAATAGTAGTCATTTGCAAAAATTACTGCAGCAACAAAAAGTTGATA
TGGTCATTACTTATGAGGATTACCCAGACATATCGTTTAAAAAAGTATTTTCCACTTCAATTTCTATCGGCTTATTAAAA
CCGAAAGAAAAGTGTACCATTGAATTTTCAAAGGAACTCTTCTTCGTTAGTAATGACAAAAAGTGCCCTTTTAGGAATAA
GACGATACAATTTCTAAAAGAAAATAATTTATCTCAGCGCCAACTTCAACAATTAGATTCTTATTCGCTTATAGAAGAGT
TTATTCAGGACGGAAAAGGAATAGCCTTTTTACCAATTAAAAATGATAAATTAGTACCAATTGAAGATGTTCCAATTGAG
AAATTAGATGTTCATTTCTTTACGAATCAAAATTCTTTCAAACAAATCCCTGATGAACTATTTAATTAA

Upstream 100 bases:

>100_bases
CTTATATACACAATGATAAACCGATGATTGACTAACGTAAAATAGGTATAAATTATGTTTGGTATCATTTATAATGATAT
CGTATAAGGGGCTGTGAGAA

Downstream 100 bases:

>100_bases
TATAATATTTATAAAAGAACTAAATTTACATACAGCAATAAAAATCCCTCCTTTCCGAATCTAAAAGAGGGATTTTCATA
TTCTATACAATTGATTTTTC

Product: transcriptional regulator, lysr family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 262

Protein sequence:

>262_residues
MEINDLIIFKTVASEGSISKAAKELGYVQPNVTERIKKLEQELETPLLHRDNKGVSLLPSGDILLDYTNQILTLVEEAKD
KIKTSGSSYIIATSQSILTNYVSKRIKENFRSYQIYVENSSHLQKLLQQQKVDMVITYEDYPDISFKKVFSTSISIGLLK
PKEKCTIEFSKELFFVSNDKKCPFRNKTIQFLKENNLSQRQLQQLDSYSLIEEFIQDGKGIAFLPIKNDKLVPIEDVPIE
KLDVHFFTNQNSFKQIPDELFN

Sequences:

>Translated_262_residues
MEINDLIIFKTVASEGSISKAAKELGYVQPNVTERIKKLEQELETPLLHRDNKGVSLLPSGDILLDYTNQILTLVEEAKD
KIKTSGSSYIIATSQSILTNYVSKRIKENFRSYQIYVENSSHLQKLLQQQKVDMVITYEDYPDISFKKVFSTSISIGLLK
PKEKCTIEFSKELFFVSNDKKCPFRNKTIQFLKENNLSQRQLQQLDSYSLIEEFIQDGKGIAFLPIKNDKLVPIEDVPIE
KLDVHFFTNQNSFKQIPDELFN
>Mature_262_residues
MEINDLIIFKTVASEGSISKAAKELGYVQPNVTERIKKLEQELETPLLHRDNKGVSLLPSGDILLDYTNQILTLVEEAKD
KIKTSGSSYIIATSQSILTNYVSKRIKENFRSYQIYVENSSHLQKLLQQQKVDMVITYEDYPDISFKKVFSTSISIGLLK
PKEKCTIEFSKELFFVSNDKKCPFRNKTIQFLKENNLSQRQLQQLDSYSLIEEFIQDGKGIAFLPIKNDKLVPIEDVPIE
KLDVHFFTNQNSFKQIPDELFN

Specific function: Regulates expression of the cell division protein ftsW, and is essential for cell viability during stationary phase [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787806, Length=83, Percent_Identity=39.7590361445783, Blast_Score=65, Evalue=5e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 30185; Mature: 30185

Theoretical pI: Translated: 6.30; Mature: 6.30

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEINDLIIFKTVASEGSISKAAKELGYVQPNVTERIKKLEQELETPLLHRDNKGVSLLPS
CCCCCEEEEEEECCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHCCCCCCEEEECC
GDILLDYTNQILTLVEEAKDKIKTSGSSYIIATSQSILTNYVSKRIKENFRSYQIYVENS
CCEEEEHHHHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHCCCEEEEEEECC
SHLQKLLQQQKVDMVITYEDYPDISFKKVFSTSISIGLLKPKEKCTIEFSKELFFVSNDK
HHHHHHHHHCCCCEEEEECCCCCCHHHHHHHCCEEEEEECCCCCEEEEECCEEEEEECCC
KCPFRNKTIQFLKENNLSQRQLQQLDSYSLIEEFIQDGKGIAFLPIKNDKLVPIEDVPIE
CCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCC
KLDVHFFTNQNSFKQIPDELFN
EEEEEEEECCCHHHHHHHHHCC
>Mature Secondary Structure
MEINDLIIFKTVASEGSISKAAKELGYVQPNVTERIKKLEQELETPLLHRDNKGVSLLPS
CCCCCEEEEEEECCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHCCCCCCEEEECC
GDILLDYTNQILTLVEEAKDKIKTSGSSYIIATSQSILTNYVSKRIKENFRSYQIYVENS
CCEEEEHHHHHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHCCCEEEEEEECC
SHLQKLLQQQKVDMVITYEDYPDISFKKVFSTSISIGLLKPKEKCTIEFSKELFFVSNDK
HHHHHHHHHCCCCEEEEECCCCCCHHHHHHHCCEEEEEECCCCCEEEEECCEEEEEECCC
KCPFRNKTIQFLKENNLSQRQLQQLDSYSLIEEFIQDGKGIAFLPIKNDKLVPIEDVPIE
CCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCC
KLDVHFFTNQNSFKQIPDELFN
EEEEEEEECCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]