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The map label for this gene is deoC [H]

Identifier: 222095547

GI number: 222095547

Start: 1866534

End: 1867205

Strand: Direct

Name: deoC [H]

Synonym: BCQ_1887

Alternate gene names: 222095547

Gene position: 1866534-1867205 (Clockwise)

Preceding gene: 222095546

Following gene: 222095548

Centisome position: 35.8

GC content: 37.95

Gene sequence:

>672_bases
ATGAATATTGCAAAGTTAATTGACCATACAATTTTAAAAGCTAATGCTACAAAAGAAGATGTTATGAAAGTAATCGAAGA
AGCAAAGGAATATAAATTCGCTTCTGTTTGTATTAACCCAACATGGGTAAAGCTAGCTGCTGAAGAACTAGCTGGACATG
ATGTAGATGTTTGTACTGTAATTGGTTTCCCATTAGGAGCAAGTACGACTGAAACAAAAGCATTTGAAACAAAAGATGCT
ATCGCAAAAGGTGCAACTGAAGTTGACATGGTAATCAACGTAGGCGCTTTAAAAGATGGCGACGACGAACTTGTTGAAAA
AGACATTTATGAAGTAGTACAAGCAGCAAAAGGAAAAGCTCTTGTAAAAGTAATCATTGAAACTTGTCTATTAACAGATG
AAGAGAAAGTACGCGCTTGTGAATTATCAGTAAAAGCTGGTGCTGACTTCGTAAAAACTTCAACTGGATTCTCAACTGGC
GGAGCAACTGCTGAAGATATCGCATTAATGCGTAAAACAGTAGGACCAAACGTTGGTGTAAAAGCATCTGGTGGTGTTCG
TACACGTGAAGATGCAGACAAAATGGTAGCTGCTGGAGCTTCTCGTATTGGAGCAAGTGCTAGTGTTGCAATCGTATTAA
ATGATGCAAAAGGTGCTACAGATAACTACTAA

Upstream 100 bases:

>100_bases
TTCCTTTTTAAAAAGAATGAACAAAATTTCAAAAGTATATTTACATTTGTTCAACTAAGAGTTAGAATGAAGTTGTTAAA
AGATATGAGGAGTGAAGATA

Downstream 100 bases:

>100_bases
TCATTAGTGAAGTCAAGGGCAATAGATACACAAAGTAAAGTGTATCTATTGCTTTAACAATTGAAAGAAATGTAAGCGGA
TACGAACACGGGAGGAGACG

Product: deoxyribose-phosphate aldolase

Products: NA

Alternate protein names: Phosphodeoxyriboaldolase; DERA; Deoxyriboaldolase [H]

Number of amino acids: Translated: 223; Mature: 223

Protein sequence:

>223_residues
MNIAKLIDHTILKANATKEDVMKVIEEAKEYKFASVCINPTWVKLAAEELAGHDVDVCTVIGFPLGASTTETKAFETKDA
IAKGATEVDMVINVGALKDGDDELVEKDIYEVVQAAKGKALVKVIIETCLLTDEEKVRACELSVKAGADFVKTSTGFSTG
GATAEDIALMRKTVGPNVGVKASGGVRTREDADKMVAAGASRIGASASVAIVLNDAKGATDNY

Sequences:

>Translated_223_residues
MNIAKLIDHTILKANATKEDVMKVIEEAKEYKFASVCINPTWVKLAAEELAGHDVDVCTVIGFPLGASTTETKAFETKDA
IAKGATEVDMVINVGALKDGDDELVEKDIYEVVQAAKGKALVKVIIETCLLTDEEKVRACELSVKAGADFVKTSTGFSTG
GATAEDIALMRKTVGPNVGVKASGGVRTREDADKMVAAGASRIGASASVAIVLNDAKGATDNY
>Mature_223_residues
MNIAKLIDHTILKANATKEDVMKVIEEAKEYKFASVCINPTWVKLAAEELAGHDVDVCTVIGFPLGASTTETKAFETKDA
IAKGATEVDMVINVGALKDGDDELVEKDIYEVVQAAKGKALVKVIIETCLLTDEEKVRACELSVKAGADFVKTSTGFSTG
GATAEDIALMRKTVGPNVGVKASGGVRTREDADKMVAAGASRIGASASVAIVLNDAKGATDNY

Specific function: Nucleotide and deoxyribonucleotide catabolism. [C]

COG id: COG0274

COG function: function code F; Deoxyribose-phosphate aldolase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the deoC/fbaB aldolase family. DeoC type 1 subfamily [H]

Homologues:

Organism=Homo sapiens, GI116063554, Length=213, Percent_Identity=31.924882629108, Blast_Score=76, Evalue=2e-14,
Organism=Escherichia coli, GI1790841, Length=213, Percent_Identity=38.0281690140845, Blast_Score=103, Evalue=7e-24,
Organism=Caenorhabditis elegans, GI17533015, Length=198, Percent_Identity=31.8181818181818, Blast_Score=70, Evalue=7e-13,
Organism=Drosophila melanogaster, GI19922098, Length=176, Percent_Identity=34.0909090909091, Blast_Score=69, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR011343
- InterPro:   IPR002915
- InterPro:   IPR022979 [H]

Pfam domain/function: PF01791 DeoC [H]

EC number: =4.1.2.4 [H]

Molecular weight: Translated: 23382; Mature: 23382

Theoretical pI: Translated: 4.70; Mature: 4.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIAKLIDHTILKANATKEDVMKVIEEAKEYKFASVCINPTWVKLAAEELAGHDVDVCTV
CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCEEEEEEECCHHHHHHHHHHCCCCCCEEEE
IGFPLGASTTETKAFETKDAIAKGATEVDMVINVGALKDGDDELVEKDIYEVVQAAKGKA
ECCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCHH
LVKVIIETCLLTDEEKVRACELSVKAGADFVKTSTGFSTGGATAEDIALMRKTVGPNVGV
HHHHHHHHHHCCCHHHHHHEEEEHHCCCCHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCE
KASGGVRTREDADKMVAAGASRIGASASVAIVLNDAKGATDNY
ECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCC
>Mature Secondary Structure
MNIAKLIDHTILKANATKEDVMKVIEEAKEYKFASVCINPTWVKLAAEELAGHDVDVCTV
CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCEEEEEEECCHHHHHHHHHHCCCCCCEEEE
IGFPLGASTTETKAFETKDAIAKGATEVDMVINVGALKDGDDELVEKDIYEVVQAAKGKA
ECCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCHH
LVKVIIETCLLTDEEKVRACELSVKAGADFVKTSTGFSTGGATAEDIALMRKTVGPNVGV
HHHHHHHHHHCCCHHHHHHEEEEHHCCCCHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCE
KASGGVRTREDADKMVAAGASRIGASASVAIVLNDAKGATDNY
ECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA