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The map label for this gene is yfiK [H]

Identifier: 222095459

GI number: 222095459

Start: 1762560

End: 1763198

Strand: Direct

Name: yfiK [H]

Synonym: BCQ_1799

Alternate gene names: 222095459

Gene position: 1762560-1763198 (Clockwise)

Preceding gene: 222095454

Following gene: 222095460

Centisome position: 33.8

GC content: 33.18

Gene sequence:

>639_bases
ATGAAAATTAAAATATTAATAGCAGATGATAACTCTTTTATAAGAGAAGGTATGAAAATTATTTTAAATACATATGAAGA
GTTCGAAGTAGTAGATACAGTAAATGATGGGAAAGAAGCAGTGGAATATTGCAAAAAGAACGACGTTGATATCGCTCTTT
TAGATGTTCGTATGCCGAACATGAATGGGGTAGAGGCGACGAAATTCATTTGTGAAGAGACGAAAACGAAGCCGCTTATT
TTAACGACGTTCGATGATGATGAATATATTTTGGACGCAGTGAAGAATGGGGCGAAAGGTTATTTATTGAAAAATAATGA
TCCAGAGCGTATTCGTGATGCGATAAAAGGAGTATATAACGGCCAAACCGTTATGCAAGATGTAGTTCTCGATAAAATTA
AGTCTAATTTAATGGAAAGTAAAGAGGAAGAATGTAAAATAGATAAAAGTCTTTTTACTGAAAGAGAGCTGAGTATTATC
GCATTAATTGCAAAAGGCTTTTCGAATAAAGAAATCTCGAAGCAACTTTTCATATCAGAAGGAACAATTGCAAATTATAT
TACGTCAGTTTTAGGGAAAACTGGACTGGAACATCGTACACAAATCGCGATTTATTATTTAACAGGGAAAGTAGATTAA

Upstream 100 bases:

>100_bases
TGTGAAAAAATGGTAAAGAGAAGTATATAATGAGCAAGTAAGAAATGTTACGGGAAGAAAGGATGTGAATGTTAGTAGGG
GAAGATCCATACTAACAAAC

Downstream 100 bases:

>100_bases
AGATATGGAATTTTGGTTAATTGTAAGTAAATTAATTGTCTTTATATATATTGTGTTTAGTTACATGTATTTAAATGTTG
CGAACTTACCATGGATTATA

Product: DNA-binding response regulator, luxr family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 212; Mature: 212

Protein sequence:

>212_residues
MKIKILIADDNSFIREGMKIILNTYEEFEVVDTVNDGKEAVEYCKKNDVDIALLDVRMPNMNGVEATKFICEETKTKPLI
LTTFDDDEYILDAVKNGAKGYLLKNNDPERIRDAIKGVYNGQTVMQDVVLDKIKSNLMESKEEECKIDKSLFTERELSII
ALIAKGFSNKEISKQLFISEGTIANYITSVLGKTGLEHRTQIAIYYLTGKVD

Sequences:

>Translated_212_residues
MKIKILIADDNSFIREGMKIILNTYEEFEVVDTVNDGKEAVEYCKKNDVDIALLDVRMPNMNGVEATKFICEETKTKPLI
LTTFDDDEYILDAVKNGAKGYLLKNNDPERIRDAIKGVYNGQTVMQDVVLDKIKSNLMESKEEECKIDKSLFTERELSII
ALIAKGFSNKEISKQLFISEGTIANYITSVLGKTGLEHRTQIAIYYLTGKVD
>Mature_212_residues
MKIKILIADDNSFIREGMKIILNTYEEFEVVDTVNDGKEAVEYCKKNDVDIALLDVRMPNMNGVEATKFICEETKTKPLI
LTTFDDDEYILDAVKNGAKGYLLKNNDPERIRDAIKGVYNGQTVMQDVVLDKIKSNLMESKEEECKIDKSLFTERELSII
ALIAKGFSNKEISKQLFISEGTIANYITSVLGKTGLEHRTQIAIYYLTGKVD

Specific function: Member of the two-component regulatory system yfiJ/yfiK [H]

COG id: COG2197

COG function: function code TK; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788222, Length=185, Percent_Identity=32.972972972973, Blast_Score=113, Evalue=1e-26,
Organism=Escherichia coli, GI1788521, Length=208, Percent_Identity=31.7307692307692, Blast_Score=108, Evalue=3e-25,
Organism=Escherichia coli, GI1787473, Length=202, Percent_Identity=29.7029702970297, Blast_Score=91, Evalue=6e-20,
Organism=Escherichia coli, GI1786747, Length=197, Percent_Identity=27.4111675126904, Blast_Score=90, Evalue=9e-20,
Organism=Escherichia coli, GI1790102, Length=201, Percent_Identity=22.8855721393035, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI87082052, Length=197, Percent_Identity=26.3959390862944, Blast_Score=69, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001789
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 23992; Mature: 23992

Theoretical pI: Translated: 4.65; Mature: 4.65

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIKILIADDNSFIREGMKIILNTYEEFEVVDTVNDGKEAVEYCKKNDVDIALLDVRMPN
CEEEEEEECCCHHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHCCCCCEEEEEEECCC
MNGVEATKFICEETKTKPLILTTFDDDEYILDAVKNGAKGYLLKNNDPERIRDAIKGVYN
CCCHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCC
GQTVMQDVVLDKIKSNLMESKEEECKIDKSLFTERELSIIALIAKGFSNKEISKQLFISE
CHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHEECC
GTIANYITSVLGKTGLEHRTQIAIYYLTGKVD
CHHHHHHHHHHHCCCCCCCEEEEEEEEEECCC
>Mature Secondary Structure
MKIKILIADDNSFIREGMKIILNTYEEFEVVDTVNDGKEAVEYCKKNDVDIALLDVRMPN
CEEEEEEECCCHHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHCCCCCEEEEEEECCC
MNGVEATKFICEETKTKPLILTTFDDDEYILDAVKNGAKGYLLKNNDPERIRDAIKGVYN
CCCHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCC
GQTVMQDVVLDKIKSNLMESKEEECKIDKSLFTERELSIIALIAKGFSNKEISKQLFISE
CHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHEECC
GTIANYITSVLGKTGLEHRTQIAIYYLTGKVD
CHHHHHHHHHHHCCCCCCCEEEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8973323; 9384377 [H]