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The map label for this gene is ycgF [H]

Identifier: 222095323

GI number: 222095323

Start: 1642635

End: 1643336

Strand: Direct

Name: ycgF [H]

Synonym: BCQ_1663

Alternate gene names: 222095323

Gene position: 1642635-1643336 (Clockwise)

Preceding gene: 222095322

Following gene: 222095324

Centisome position: 31.5

GC content: 32.19

Gene sequence:

>702_bases
ATGAAAGCTAGTCTATTTTTAATGATTACATCATTACTTAATAGTAAAGGAAGTAGAAAGGATAGAGTGATGTTTGGAGC
GATTATACAACAAATTGTATTAGGTATTTCATTAGCTGCGCCAGTAGGTCCAATTAATATTGAAATGTTAAAACGAGGAA
TTGAACGAGGTTTTTGGCATGCGTGGGTTGTTGGAATTGGTGGAATGACAGCAGATATTTTGTTTATGCTTCTCATCTAT
TTCGGTTTATCTTCTCTGTTTATGTATACATATGTACAAGCTTTTATGTATTGCACAGGGTTTTTCTTATTATTTTATTT
AGGATTTCAAAGTGTAAAACAAGGAATTTCTCAATCGAATATGGAATATAAAAAAGAAGAGGTAGGCGGCCTTAAACAAT
CGTTTATGGCAGGTTTTTTAATTGCGATATCCAATCCATTAAATCTTGTTTTTTGGTTTGGTATATACGGAAGTACACTT
AGCTCATTGCTTACGAAGGTAACGAAACAAGAAGCCTTTTTGTATAGTCTTTGTATTATCGTTGGTATTATTTTATGGAA
TGTAAATATTGCTTTTTCTGTCCATTTTGGCAGAACTTTATTAAAGCAAAAAGCACTTGGCTATATAACAGCCGGAGCAG
GTATTATTTTAGTAGGATATTCTATCCATTTTGCATACAAAGCTTTACAGTTGTTCACATAA

Upstream 100 bases:

>100_bases
ATGTCCTTTTCTTTATAAGATAGAAAAGTAAGAGCCATCATCTGGAGGGCTCTTTTGCATATTTTGGATAAAAAAGGGTA
TTTTAGTAGTACATATTTTC

Downstream 100 bases:

>100_bases
GATTGAAGGGGAGATTTTTATGTATCGAACCACTATTGACGGAAAAGAAATCATTATTACGTTAGCACCAAAAATCAGAA
AAGAAATTACTGATAGAAAT

Product: transporter, lyse family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 233; Mature: 233

Protein sequence:

>233_residues
MKASLFLMITSLLNSKGSRKDRVMFGAIIQQIVLGISLAAPVGPINIEMLKRGIERGFWHAWVVGIGGMTADILFMLLIY
FGLSSLFMYTYVQAFMYCTGFFLLFYLGFQSVKQGISQSNMEYKKEEVGGLKQSFMAGFLIAISNPLNLVFWFGIYGSTL
SSLLTKVTKQEAFLYSLCIIVGIILWNVNIAFSVHFGRTLLKQKALGYITAGAGIILVGYSIHFAYKALQLFT

Sequences:

>Translated_233_residues
MKASLFLMITSLLNSKGSRKDRVMFGAIIQQIVLGISLAAPVGPINIEMLKRGIERGFWHAWVVGIGGMTADILFMLLIY
FGLSSLFMYTYVQAFMYCTGFFLLFYLGFQSVKQGISQSNMEYKKEEVGGLKQSFMAGFLIAISNPLNLVFWFGIYGSTL
SSLLTKVTKQEAFLYSLCIIVGIILWNVNIAFSVHFGRTLLKQKALGYITAGAGIILVGYSIHFAYKALQLFT
>Mature_233_residues
MKASLFLMITSLLNSKGSRKDRVMFGAIIQQIVLGISLAAPVGPINIEMLKRGIERGFWHAWVVGIGGMTADILFMLLIY
FGLSSLFMYTYVQAFMYCTGFFLLFYLGFQSVKQGISQSNMEYKKEEVGGLKQSFMAGFLIAISNPLNLVFWFGIYGSTL
SSLLTKVTKQEAFLYSLCIIVGIILWNVNIAFSVHFGRTLLKQKALGYITAGAGIILVGYSIHFAYKALQLFT

Specific function: Unknown

COG id: COG1280

COG function: function code E; Putative threonine efflux protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rht family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001123 [H]

Pfam domain/function: PF01810 LysE [H]

EC number: NA

Molecular weight: Translated: 25951; Mature: 25951

Theoretical pI: Translated: 10.04; Mature: 10.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKASLFLMITSLLNSKGSRKDRVMFGAIIQQIVLGISLAAPVGPINIEMLKRGIERGFWH
CCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
AWVVGIGGMTADILFMLLIYFGLSSLFMYTYVQAFMYCTGFFLLFYLGFQSVKQGISQSN
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
MEYKKEEVGGLKQSFMAGFLIAISNPLNLVFWFGIYGSTLSSLLTKVTKQEAFLYSLCII
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VGIILWNVNIAFSVHFGRTLLKQKALGYITAGAGIILVGYSIHFAYKALQLFT
HHHHHHHCHHEEEEHHHHHHHHHHHHHHEECCCCEEEEHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKASLFLMITSLLNSKGSRKDRVMFGAIIQQIVLGISLAAPVGPINIEMLKRGIERGFWH
CCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
AWVVGIGGMTADILFMLLIYFGLSSLFMYTYVQAFMYCTGFFLLFYLGFQSVKQGISQSN
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
MEYKKEEVGGLKQSFMAGFLIAISNPLNLVFWFGIYGSTLSSLLTKVTKQEAFLYSLCII
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VGIILWNVNIAFSVHFGRTLLKQKALGYITAGAGIILVGYSIHFAYKALQLFT
HHHHHHHCHHEEEEHHHHHHHHHHHHHHEECCCCEEEEHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969502; 9384377 [H]