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The map label for this gene is dapB [H]

Identifier: 222095262

GI number: 222095262

Start: 1569837

End: 1570637

Strand: Direct

Name: dapB [H]

Synonym: BCQ_1602

Alternate gene names: 222095262

Gene position: 1569837-1570637 (Clockwise)

Preceding gene: 222095261

Following gene: 222095263

Centisome position: 30.11

GC content: 38.33

Gene sequence:

>801_bases
ATGAAAGAAATTAAAGTAATTATCGCTGGACCAAGAGGACGTATGGGACATGAAGCAGTTCTTCTTATGGAAAGAACGGA
ACATTTTAATTTAGTAGCAGCAGTGGATTATAAGCATGGTGGAGAGAAAATCTCTGATTTACCGGGAATGCCAGCGCTAG
ATACACCTATTTATGGAGATTTACATACTTGTTTAGAGGAAGTAGAAGCAGATGTGTTGTTAGATTTAACAACGCCAGAA
GTTGGGAAACAACACGTTACACTAGCAGTTGAGCGTGGACTTCGTTCTGTTATTGGTACAACTGGATTTACAGAAGAAGA
GCTAAAACAATTAACCGAGACTGCGAAAGAAAAAGCAGTAGGAACAATTATCGCTCCAAACTTTGCAATTGGTGCAGTTC
TTATGATGAAATTCTCACAAATGGCAGCGAAATACTTCCAAGATGTTGAAGTAATTGAATTGCATCATGATCAAAAGTTA
GATGCACCATCTGGTACAGCGGTAAAAACAGTAGAATTAATTCGTCAAAATCGTGAATCAAAGCAGCAAGGTCATCCAAA
TGAAGTAGAGCAACTAGAAGGGGCTCGTGGTGCAAATGTAGACGGCATTCACATTCATAGTGTACGTTTACCAGGACTTA
TTGCACACCAAGAAGTAATGTTTGGTGGAGACGGACAAATGTTAACAGTTCGTCATGATTCATTCAATCGTGCATCATTT
ATGTCTGGTGTAAAACTATCAATTGAGACAGTAATGAATCTAGACCATCTTGTGTACGGTTTAGAAAATATTATCGACTA
A

Upstream 100 bases:

>100_bases
TAAATATTGATTTAGAAACAGCACATAACATTGTAATGAATAAATTTAATACTCGCGATAAAGATCGCTGGACACGTATT
GATGAGGGAGAGAAAGAATA

Downstream 100 bases:

>100_bases
AGGGGAGACAACGGATGAAAATTGCCTTAATTGCACATGACAAAAAGAAAAATGACATGGTTTCGTTTGCATACGCATAT
AAACCAATTTTTGAACAACA

Product: dihydrodipicolinate reductase

Products: NA

Alternate protein names: DHPR [H]

Number of amino acids: Translated: 266; Mature: 266

Protein sequence:

>266_residues
MKEIKVIIAGPRGRMGHEAVLLMERTEHFNLVAAVDYKHGGEKISDLPGMPALDTPIYGDLHTCLEEVEADVLLDLTTPE
VGKQHVTLAVERGLRSVIGTTGFTEEELKQLTETAKEKAVGTIIAPNFAIGAVLMMKFSQMAAKYFQDVEVIELHHDQKL
DAPSGTAVKTVELIRQNRESKQQGHPNEVEQLEGARGANVDGIHIHSVRLPGLIAHQEVMFGGDGQMLTVRHDSFNRASF
MSGVKLSIETVMNLDHLVYGLENIID

Sequences:

>Translated_266_residues
MKEIKVIIAGPRGRMGHEAVLLMERTEHFNLVAAVDYKHGGEKISDLPGMPALDTPIYGDLHTCLEEVEADVLLDLTTPE
VGKQHVTLAVERGLRSVIGTTGFTEEELKQLTETAKEKAVGTIIAPNFAIGAVLMMKFSQMAAKYFQDVEVIELHHDQKL
DAPSGTAVKTVELIRQNRESKQQGHPNEVEQLEGARGANVDGIHIHSVRLPGLIAHQEVMFGGDGQMLTVRHDSFNRASF
MSGVKLSIETVMNLDHLVYGLENIID
>Mature_266_residues
MKEIKVIIAGPRGRMGHEAVLLMERTEHFNLVAAVDYKHGGEKISDLPGMPALDTPIYGDLHTCLEEVEADVLLDLTTPE
VGKQHVTLAVERGLRSVIGTTGFTEEELKQLTETAKEKAVGTIIAPNFAIGAVLMMKFSQMAAKYFQDVEVIELHHDQKL
DAPSGTAVKTVELIRQNRESKQQGHPNEVEQLEGARGANVDGIHIHSVRLPGLIAHQEVMFGGDGQMLTVRHDSFNRASF
MSGVKLSIETVMNLDHLVYGLENIID

Specific function: Biosynthesis of diaminopimelate and lysine from aspartate semialdehyde; second step. [C]

COG id: COG0289

COG function: function code E; Dihydrodipicolinate reductase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dihydrodipicolinate reductase family [H]

Homologues:

Organism=Escherichia coli, GI1786214, Length=270, Percent_Identity=29.6296296296296, Blast_Score=98, Evalue=5e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022663
- InterPro:   IPR000846
- InterPro:   IPR022664
- InterPro:   IPR011770
- InterPro:   IPR016040 [H]

Pfam domain/function: PF05173 DapB_C; PF01113 DapB_N [H]

EC number: =1.3.1.26 [H]

Molecular weight: Translated: 29250; Mature: 29250

Theoretical pI: Translated: 5.34; Mature: 5.34

Prosite motif: PS01298 DAPB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKEIKVIIAGPRGRMGHEAVLLMERTEHFNLVAAVDYKHGGEKISDLPGMPALDTPIYGD
CCCEEEEEECCCCCCCCCEEEEEECCCCEEEEEEEECCCCCCHHHCCCCCCCCCCCCCCC
LHTCLEEVEADVLLDLTTPEVGKQHVTLAVERGLRSVIGTTGFTEEELKQLTETAKEKAV
HHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHC
GTIIAPNFAIGAVLMMKFSQMAAKYFQDVEVIELHHDQKLDAPSGTAVKTVELIRQNRES
CEEECCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHH
KQQGHPNEVEQLEGARGANVDGIHIHSVRLPGLIAHQEVMFGGDGQMLTVRHDSFNRASF
HHCCCCCHHHHHCCCCCCCCCCEEEEEEECCCEEECCEEEECCCCCEEEEECCCCCHHHH
MSGVKLSIETVMNLDHLVYGLENIID
HCCCEEHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKEIKVIIAGPRGRMGHEAVLLMERTEHFNLVAAVDYKHGGEKISDLPGMPALDTPIYGD
CCCEEEEEECCCCCCCCCEEEEEECCCCEEEEEEEECCCCCCHHHCCCCCCCCCCCCCCC
LHTCLEEVEADVLLDLTTPEVGKQHVTLAVERGLRSVIGTTGFTEEELKQLTETAKEKAV
HHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHC
GTIIAPNFAIGAVLMMKFSQMAAKYFQDVEVIELHHDQKLDAPSGTAVKTVELIRQNRES
CEEECCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHH
KQQGHPNEVEQLEGARGANVDGIHIHSVRLPGLIAHQEVMFGGDGQMLTVRHDSFNRASF
HHCCCCCHHHHHCCCCCCCCCCEEEEEEECCCEEECCEEEECCCCCEEEEECCCCCHHHH
MSGVKLSIETVMNLDHLVYGLENIID
HCCCEEHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA