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The map label for this gene is ypbB [H]

Identifier: 222095213

GI number: 222095213

Start: 1528303

End: 1529364

Strand: Direct

Name: ypbB [H]

Synonym: BCQ_1553

Alternate gene names: 222095213

Gene position: 1528303-1529364 (Clockwise)

Preceding gene: 222095211

Following gene: 222095214

Centisome position: 29.31

GC content: 32.67

Gene sequence:

>1062_bases
ATGCAACTACAATATACTGTATTGTATTGTTTAAAACAATTGAATGGTGAAAGGACCGTTTCTTCTATTTATTATTTATT
AAAGGGAAAACGTTCTTCGCAAACGTTACAAGATGGAAATATGTTCCGAATTTCTTTTTTGTTTGGAATATATAAATTGT
TAAATAGAACTGAATATGATCGTGAAGTTGCAAAGTTGTTGCAAGCAGATTTAATTCAGGAAATACATGAAAATACATAT
TTGTTAACATCTAAAGGTGAAATGCAGTTACATACATGGGAGGAATGGTATGCTTTCCCAGCGCATTTACATGGTTTGCA
CTATGGTGAATTAGGTGAAACGTTTTGGAAAAGATTATCTTTAATTATTCAAACTGTATCTAATTTACAACAGAATAATA
CGAAGTTTATTCCTATTCAACAAGATACAGAAATAATGGTGTGGGTGAAGCGATTTTTAACAGGTATGCCGTATAGGCGA
ATTGAATTGGCAAAAAGATTATGGAAAGAAATACATAATCTTTTAGGGAAATGTGATGTGATAGAAGCGACGATTGTAAC
ATATAGATTAACAGGATATGAACGTATCGGTTGTACATTGCAGCAGTTAGCGGAAATTACGAAACGAGATATTTTCAGGG
TGTATTTTTTATTTTGGGGTACAATTCATTTCCTTATACAAGAAGTTCGCGATAAAGAAAATGAATTTCCGTTATTAGCT
GAGATTATCTCTTATCCAAATGAGAGAGCTGAATTATTTAGTTTATCAACGAAAAAAACATATAATTTTTGGAGGCAAGG
GCGCTCGTTAGAAGAAATAGCGACGATTAGAAATCTAAAGGTTGCAACGATAGAAGATCATTTTGTTGAAATTGCTTTGC
GAGAAAGAGATTTTTCTATCGAGATGTTTATGGAAAAAGAAAAAATAGATAAAGTAACAGAAGTAATTGATGCATTACAA
ACACGTAAGCTGCGTGAGTTGAAACAAGCGGTTGGAGAGGATATCTCTTATTTTGAAGTTCGTCTTGTATTGGCGCGGAT
GGAGGGTATAAATGAAACTTGA

Upstream 100 bases:

>100_bases
TACAAGTATATATTGCCCATATGATAAGTTTAATGAGTAACGGTAGATGGCGCAATCATAACAAAAAGCAATTAAGTTAG
ATTGAAAGGTGGAAGCGGTA

Downstream 100 bases:

>100_bases
GGAATATTTATATAGGTGGTTTGGATATTCTGAATTTCGTCCAGGTCAAAAAGGGGTAATTACAGATTTATTGGAAGGAA
AAGATGTTATAGCGATGCTT

Product: ATP-dependent DNA helicase recq

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 353; Mature: 353

Protein sequence:

>353_residues
MQLQYTVLYCLKQLNGERTVSSIYYLLKGKRSSQTLQDGNMFRISFLFGIYKLLNRTEYDREVAKLLQADLIQEIHENTY
LLTSKGEMQLHTWEEWYAFPAHLHGLHYGELGETFWKRLSLIIQTVSNLQQNNTKFIPIQQDTEIMVWVKRFLTGMPYRR
IELAKRLWKEIHNLLGKCDVIEATIVTYRLTGYERIGCTLQQLAEITKRDIFRVYFLFWGTIHFLIQEVRDKENEFPLLA
EIISYPNERAELFSLSTKKTYNFWRQGRSLEEIATIRNLKVATIEDHFVEIALRERDFSIEMFMEKEKIDKVTEVIDALQ
TRKLRELKQAVGEDISYFEVRLVLARMEGINET

Sequences:

>Translated_353_residues
MQLQYTVLYCLKQLNGERTVSSIYYLLKGKRSSQTLQDGNMFRISFLFGIYKLLNRTEYDREVAKLLQADLIQEIHENTY
LLTSKGEMQLHTWEEWYAFPAHLHGLHYGELGETFWKRLSLIIQTVSNLQQNNTKFIPIQQDTEIMVWVKRFLTGMPYRR
IELAKRLWKEIHNLLGKCDVIEATIVTYRLTGYERIGCTLQQLAEITKRDIFRVYFLFWGTIHFLIQEVRDKENEFPLLA
EIISYPNERAELFSLSTKKTYNFWRQGRSLEEIATIRNLKVATIEDHFVEIALRERDFSIEMFMEKEKIDKVTEVIDALQ
TRKLRELKQAVGEDISYFEVRLVLARMEGINET
>Mature_353_residues
MQLQYTVLYCLKQLNGERTVSSIYYLLKGKRSSQTLQDGNMFRISFLFGIYKLLNRTEYDREVAKLLQADLIQEIHENTY
LLTSKGEMQLHTWEEWYAFPAHLHGLHYGELGETFWKRLSLIIQTVSNLQQNNTKFIPIQQDTEIMVWVKRFLTGMPYRR
IELAKRLWKEIHNLLGKCDVIEATIVTYRLTGYERIGCTLQQLAEITKRDIFRVYFLFWGTIHFLIQEVRDKENEFPLLA
EIISYPNERAELFSLSTKKTYNFWRQGRSLEEIATIRNLKVATIEDHFVEIALRERDFSIEMFMEKEKIDKVTEVIDALQ
TRKLRELKQAVGEDISYFEVRLVLARMEGINET

Specific function: Unknown

COG id: COG4955

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008308 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 41980; Mature: 41980

Theoretical pI: Translated: 7.25; Mature: 7.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLQYTVLYCLKQLNGERTVSSIYYLLKGKRSSQTLQDGNMFRISFLFGIYKLLNRTEYD
CCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCEEHHHHHHHHHHHHCCCHHH
REVAKLLQADLIQEIHENTYLLTSKGEMQLHTWEEWYAFPAHLHGLHYGELGETFWKRLS
HHHHHHHHHHHHHHHHCCEEEEECCCCEEEEEHHHHHHHHHHHCCCCHHHHHHHHHHHHH
LIIQTVSNLQQNNTKFIPIQQDTEIMVWVKRFLTGMPYRRIELAKRLWKEIHNLLGKCDV
HHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHH
IEATIVTYRLTGYERIGCTLQQLAEITKRDIFRVYFLFWGTIHFLIQEVRDKENEFPLLA
HHHHHHEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
EIISYPNERAELFSLSTKKTYNFWRQGRSLEEIATIRNLKVATIEDHFVEIALRERDFSI
HHHCCCCCHHHHHHCHHHHHHHHHHCCCCHHHHHHHHCCEEEEEHHHHHHHHHHCCCCHH
EMFMEKEKIDKVTEVIDALQTRKLRELKQAVGEDISYFEVRLVLARMEGINET
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MQLQYTVLYCLKQLNGERTVSSIYYLLKGKRSSQTLQDGNMFRISFLFGIYKLLNRTEYD
CCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCEEHHHHHHHHHHHHCCCHHH
REVAKLLQADLIQEIHENTYLLTSKGEMQLHTWEEWYAFPAHLHGLHYGELGETFWKRLS
HHHHHHHHHHHHHHHHCCEEEEECCCCEEEEEHHHHHHHHHHHCCCCHHHHHHHHHHHHH
LIIQTVSNLQQNNTKFIPIQQDTEIMVWVKRFLTGMPYRRIELAKRLWKEIHNLLGKCDV
HHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHH
IEATIVTYRLTGYERIGCTLQQLAEITKRDIFRVYFLFWGTIHFLIQEVRDKENEFPLLA
HHHHHHEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
EIISYPNERAELFSLSTKKTYNFWRQGRSLEEIATIRNLKVATIEDHFVEIALRERDFSI
HHHCCCCCHHHHHHCHHHHHHHHHHCCCCHHHHHHHHCCEEEEEHHHHHHHHHHCCCCHH
EMFMEKEKIDKVTEVIDALQTRKLRELKQAVGEDISYFEVRLVLARMEGINET
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8760912; 9384377 [H]