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The map label for this gene is ygcM [H]

Identifier: 222095074

GI number: 222095074

Start: 1403808

End: 1404299

Strand: Direct

Name: ygcM [H]

Synonym: BCQ_1414

Alternate gene names: 222095074

Gene position: 1403808-1404299 (Clockwise)

Preceding gene: 222095073

Following gene: 222095075

Centisome position: 26.92

GC content: 33.94

Gene sequence:

>492_bases
ATGGATAATTTCTTTGGATTTCGCATCGTAGAAAATTTGCAAAAAATGGACAAGGATATTCAGCGTAAACAGCTCAAATA
TCATAATAAACGAGTAATGGTCAGCAAGGAATTTACATTTGATGCAGCACACCATTTACACTGTTATGAAGGGAAATGTA
AAAACTTACATGGTCACACATATAAAGTTGTATTTGGGATTAGTGGATATGTAAATGAAATCGGTCTTGCAATTGACTTT
GGAGATATAAAAGAAATTTGGAAGAATGAAATAGAAATTTATTTAGATCATCGTTATTTAAACGAAACGTTACCAGCGAT
GAATACAACTGCTGAAAATATGGTCGTTTGGATTTATGAAAAGATGGCAGAAGCGTTAACAAAAGATAATCGTGTGAATG
AATATAAAGGAGCTCGTGTTGAATTTGTTCGTCTATTTGAGACTCCGACTAGTTATGCAGAAGTAAGACGGGAGTGGATG
CTCGATGAGTAA

Upstream 100 bases:

>100_bases
ACGGAATCATTGGTGATGGTTGCGGTGAATGTCCAGCATGTCAACTTCGTAAAGCAGGATTAGATACGTACCTACAAGAA
CGCGAAGGAGCGAGTAACTA

Downstream 100 bases:

>100_bases
AATCCCTGTCTTAGAAATATTTGGTCCGACTATTCAAGGTGAAGGAATGGTTGTAGGACAAAAGACGATGTTTATCCGTA
CAGCTGGCTGTGATTATAGC

Product: 6-pyruvoyl tetrahydrobiopterin synthase

Products: 6-pyruvoyl-5,6,7,8-tetrahydropterin; triphosphate

Alternate protein names: CPH4 synthase; Queuosine biosynthesis protein queD [H]

Number of amino acids: Translated: 163; Mature: 163

Protein sequence:

>163_residues
MDNFFGFRIVENLQKMDKDIQRKQLKYHNKRVMVSKEFTFDAAHHLHCYEGKCKNLHGHTYKVVFGISGYVNEIGLAIDF
GDIKEIWKNEIEIYLDHRYLNETLPAMNTTAENMVVWIYEKMAEALTKDNRVNEYKGARVEFVRLFETPTSYAEVRREWM
LDE

Sequences:

>Translated_163_residues
MDNFFGFRIVENLQKMDKDIQRKQLKYHNKRVMVSKEFTFDAAHHLHCYEGKCKNLHGHTYKVVFGISGYVNEIGLAIDF
GDIKEIWKNEIEIYLDHRYLNETLPAMNTTAENMVVWIYEKMAEALTKDNRVNEYKGARVEFVRLFETPTSYAEVRREWM
LDE
>Mature_163_residues
MDNFFGFRIVENLQKMDKDIQRKQLKYHNKRVMVSKEFTFDAAHHLHCYEGKCKNLHGHTYKVVFGISGYVNEIGLAIDF
GDIKEIWKNEIEIYLDHRYLNETLPAMNTTAENMVVWIYEKMAEALTKDNRVNEYKGARVEFVRLFETPTSYAEVRREWM
LDE

Specific function: Catalyzes the conversion of 7,8-dihydroneopterin triphosphate (H2NTP) to 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) and acetaldehyde [H]

COG id: COG0720

COG function: function code H; 6-pyruvoyl-tetrahydropterin synthase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the PTPS family. QueD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789124, Length=90, Percent_Identity=43.3333333333333, Blast_Score=64, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007116
- InterPro:   IPR007115 [H]

Pfam domain/function: PF01242 PTPS [H]

EC number: 4.2.3.12

Molecular weight: Translated: 19451; Mature: 19451

Theoretical pI: Translated: 6.63; Mature: 6.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDNFFGFRIVENLQKMDKDIQRKQLKYHNKRVMVSKEFTFDAAHHLHCYEGKCKNLHGHT
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHCEEECCCCCCCCCCCE
YKVVFGISGYVNEIGLAIDFGDIKEIWKNEIEIYLDHRYLNETLPAMNTTAENMVVWIYE
EEEEEECCHHHHHHCEEEEHHHHHHHHHCCEEEEECHHHHHHHCCCCCCCHHHHHHHHHH
KMAEALTKDNRVNEYKGARVEFVRLFETPTSYAEVRREWMLDE
HHHHHHHCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHCCCC
>Mature Secondary Structure
MDNFFGFRIVENLQKMDKDIQRKQLKYHNKRVMVSKEFTFDAAHHLHCYEGKCKNLHGHT
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHCEEECCCCCCCCCCCE
YKVVFGISGYVNEIGLAIDFGDIKEIWKNEIEIYLDHRYLNETLPAMNTTAENMVVWIYE
EEEEEECCHHHHHHCEEEEHHHHHHHHHCCEEEEECHHHHHHHCCCCCCCHHHHHHHHHH
KMAEALTKDNRVNEYKGARVEFVRLFETPTSYAEVRREWMLDE
HHHHHHHCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: Mg2+; Zn2+ [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): 17.7 {6-(L-erythro-1,2-dihydroxypropyl} 5 {6-(L-erythro-1,2-dihydroxypropyl} 0.0091 {6-(L-erythro-1,2-dihydroxypropyl} 0.008 {6-(L-erythro-1,2-dihydroxypropyl} [C]

Substrates: 6-[(1S,2R)-1,2-dihydroxy-3-triphosphooxypropyl]-7,8-dihydropterin

Specific reaction: 6-[(1S,2R)-1,2-dihydroxy-3-triphosphooxypropyl]-7,8-dihydropterin = 6-pyruvoyl-5,6,7,8-tetrahydropterin + triphosphate

General reaction: Intramolecular redox reaction; P-O bond cleavage; Triphosphate elimination [C]

Inhibitor: (NH4)2SO4 [C]

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]